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Published | Source | Title | Categories | Focal Topics | Extract Data | Document Location | Watershed Code | Abstract | Keyword Tags |
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2013 | Christopher C. Adams | Survival and Movement of Juvenile Coho Salmon (Oncorhynchus kisutch) in the Shasta River, California | Technical Report | Salmon | Shasta River | 180102 | Movement and survival of PIT tagged juvenile coho salmon (Oncorhynchus kisutch) were assessed using a network of detection stations located throughout the Shasta River, a tributary of the Klamath River in interior northern California. This highly productive river system promotes rapid growth rates of salmonids. Coho salmon are large enough to PIT tag during their first spring, allowing detailed information on movements and survival to be collected, from approximately three months after emergence to age-1 smolt outmigration. The general movement patterns observed were outmigration of age-0 coho salmon from the Shasta River at both fry and smolt life stages, extensive upstream movements to summer rearing locations, fall redistribution among segments of the watershed, and smolt outmigration at age-1 during the second spring. I developed a multi-state mark-recapture model to estimate apparent survival, movement, and detection probabilities among four segments of the Shasta River during the first spring, summer, winter, and age-1 smolt outmigration periods. Apparent survival estimates in different segments of the Shasta River ranged from 0.42 to 0.74 over the summer and from 0.52 to 1.00 over the winter. The estimated apparent survival probability for age-1 smolts migrating from the upper Shasta River to the Klamath River was 0.77.Findings in this study may be used to guide restoration efforts for coho salmon in the Shasta River by focusing them on locations that are not meeting fish needs or during seasonal periods of low survival. | Shasta River, Coho Salmon (Oncorhynchus kisutch) | |
2017 | Andrew Nichols, Robert Lusardi, Ann Willis, | Little Shasta River Aquatic Habitat Assessment | Technical Report | Aquatic Habitat / Invertebrates / Insects | Shasta River | 180102 | The Shasta River and its tributaries provide critical spawning and rearing habitat for threatened and endangered salmonids within the lower Klamath River Basin of northern California and southern Oregon (NRC, 2004; NOAA, 2012). Over the last decade, conservation and restoration activities in the Shasta River Basin have principally focused on channel reaches along the mainstem Shasta River and spring-fed reaches of the Shasta River tributaries including Big Recent hydrologic and water temperature assessment activities along the Little Shasta River (Nichols et al., 2016) suggest the upper reaches accessible to anadromous salmonids (rkm 18.5 to rkm 25) may provide suitable thermal and structural aquatic habitat for cold-water fishes. Data collected throughout the 2015 water year showed that approximately 3 ft3/s of cool water remained in the Little Shasta River above rkm 18.5 (see Figure 1 and Figure 2) throughout the annual irrigation season (March through October). However, channel reaches downstream from rkm 18.5 had zero flow (or were dry) through much of the same period. | Habitat Assessment, Little Shasta, | |
2021 | Domenic Giudice, Morgan Knechtle, California Department of Fish and Wildlife | Shasta River Salmonid Monitoring 2020 Siskiyou County, CA | Technical Report | Monitoring Programs, Salmon | Shasta River | 180102 | A total of 4,168 fall run Chinook Salmon (Oncorhynchus tshawytscha) were estimated to have entered the Shasta River during the 2020 spawning season. An underwater video camera was operated in the flume of the Shasta River Fish Counting Facility (SRFCF) twenty-four hours a day, seven days a week, from September 2, 2020 until January 11, 2021. The first Chinook Salmon was observed on September 5, 2020 and the last Chinook Salmon on December 9, 2020. Klamath River Project (KRP) staff sampled 434 carcasses to collect biological metrics and to determine the presence of Iron Gate Hatchery produced fish. Chinook Salmon carcasses sampled in the spawning ground surveys (SGS), weir washbacks (WB) and adult trap were used to describe characteristics of the run. We processed 434 carcasses which ranged in fork length (FL) from 39 cm. to 97 cm. Males ranged in FL from 39 cm. to 97 cm. and averaged 61 cm. Females ranged in FL from 45 cm. to 82 cm. and averaged 63 cm. Grilse were determined by scale-based aging. The run was comprised of 393 grilse (9.4%), and 3,775 adults (90.6%). The sex composition of the run, based on 20 SGS fish sampled, was 60% (2,501) female and 40% (1,667) male. No hatchery origin fishes, as denoted by adipose clipped (ad) carcasses, were encountered during SGS sampling, however an estimate of 34 (0.81%) ad fish entered the Shasta River based on video observations. Coded-wire tag (CWT) proportions from Iron Gate Hatchery (IGH) were used to estimate the age classes and release types of IGH Chinook Salmon observed by video in the Shasta River this year. A net total of 37 Coho Salmon (Oncorhynchus kisutch) were estimated to have entered the Shasta River prior to removal of the weir on January 9, 2020. The first Coho Salmon of the season was observed swimming upstream through the SRFCF on November 14, 2020 and the last Coho Salmon was observed swimming upstream through the SRFCF on January 6, 2021. Seven Coho Salmon carcasses were recovered as WB samples. | Chinook Salmon (Oncorhynchus tshawytscha), Monitoring, Shasta, | |
2020 | ESSA Technologies Ltd. | Klamath Basin Integrated Fisheries Restoration and Monitoring Plan (IFRMP) Phase 3 – Prioritization Criteria Quick-Reference Guide | Technical Memo | Adaptive Management, Habitat Restoration, Monitoring Programs, Other threatened fishes, Water Quality, Water Temperature | Klamath Basin | After careful consideration of alternatives, we adopted a multi-criteria scoring approach to prioritization that has undergone multiple rounds of peer-review by Sub-basin Working Group (SBWG) participants. The multi-criterion prioritization framework developed for Phase 3 of the IFRMP is based on six key questions to ask about any restoration project under consideration, which are linked to corresponding criteria. The Klamath IFRMP Prioritization Tool (http://klamath.essa.com) provides a rigorous, transparent and consistent method across the entire Klamath basin. Adjustments to various inputs and weighting factors are structured and automated to ensure consistency and scoring flexibility. The tool is specifically designed to be routinely updated based on results of ongoing adaptive management and monitoring. Readers are encouraged to log into the tool and experiment with alternative weighting systems to test the sensitivity of priority rankings. | Klamath IFRMP Prioritization Tool, multi-criteria scoring approach, Range Overlap, Prioritization, Habitat Restoration, CPIs, Stressors, | ||
2021 | M.E. Hereford, T.G. Wise, and A. Gonyaw, Oregon Department of Fish and Wildlife, The Klamath Tribes | Implementation plan for the Reintroduction of Anadromous Fishes into the Oregon portion of the Upper Klamath Basin | Technical Report | Habitat Restoration, Monitoring Programs, Salmon | Upper Klamath | 180102 | The Reintroduction Implementation Plan recommends species-specific approaches to guide the reintroduction of historically present anadromous fishes. Fall-run Chinook, Coho Salmon, steelhead trout, and Pacific Lamprey are all found in habitat immediately below Iron Gate Dam. When the dams are removed there is a high degree of confidence that individuals of these species will repopulate newly available habitat on their own. Therefore, this plan recommends a volitional approach to reintroduction of these fishes, in which no active measures will initially be taken to assist in repopulating habitat in the Upper Klamath Basin. The only remaining populations of spring-run Chinook Salmon in the Klamath Basin are located in the Trinity River and Salmon River sub-basins (150 and 128 miles downstream of Iron Gate Dam, respectively). Because of the long distance from Iron Gate Dam, and even further distance to newly available habitat, to the source populations of spring-run Chinook Salmon (Trinity River and Salmon River sub-basins), these fish are unlikely to repopulate habitat in the upper basin on their own. This plan recommends and outlines the approaches for an active reintroduction program to repopulate suitable habitat in the Upper Klamath Basin with spring-run Chinook Salmon through the use of releasing pathogen-screened, hatchery reared juveniles from an in-basin source (most likely from the Trinity River sub-basin). The Reintroduction Implementation Plan includes a recommended strategy for monitoring re-establishment of anadromous fishes following the removal of the four Klamath Hydroelectric dams. The strategy for monitoring will be focused on fundamental questions. Immediately following the availability of passage, monitoring will focus on determining if anadromous fishes are migrating into habitat immediately above the dams. | reintroduction, anadromous fishes, Oregon, Upper Klamath Basin | |
2021 | Klamath River Renewal Corporation | Lower Klamath Project FERC Project No. 14803 Water Quality Monitoring and Management Plan | Technical Report | Monitoring Programs, Water Quality | Lower Klamath | 180102 | This Water Quality Monitoring and Management Plan identifies measures that the Renewal Corporation will implement to assess potential water quality impacts relating to implementation of the Proposed Action from the site of J.C. Boyle Dam to the Pacific Ocean. The Renewal Corporation has prepared 16 Management Plans for FERC’s review and approval as conditions of a license surrender order. These Management Plans were developed in consultation with | Water Quality, FERC | |
2021 | Klamath River Renewal Corporation | Lower Klamath Project FERC Project No. 14803 Sediment Deposit Remediation Plan | Technical Report | Sediment & Geomorphology | Lower Klamath | This Sediment Deposit Remediation Plan identifies the measures the Renewal Corporation will implement to monitor the deposition of sediments along the Klamath River, immediately north and south of the Klamath estuary, and at the Crescent City harbor. The Renewal Corporation has prepared 16 Management Plans for FERC’s review and approval as conditions of a license surrender order. These Management Plans were developed in consultation with federal, state and county governments and tribes. | Sediment, FERC | ||
2021 | Klamath River Renewal Corporation | Lower Klamath Project FERC Project No. 14803 Reservoir Drawdown and Diversion Plan | Technical Report | Dams & Reservoirs | Lower Klamath | 180102 | This Reservoir Drawdown and Diversion Plan describes the proposed drawdown methods, procedures, schedules, and monitoring efforts the Renewal Corporation will implement as part of the Proposed Action. The Renewal Corporation has prepared 16 Management Plans for FERC’s review and approval as conditions of a license surrender order. These Management Plans were developed in consultation with federal, state and county governments and tribes. | FERC, Reservoir | |
2021 | Klamath River Renewal Corporation, Stantec Consulting Services Inc. | Lower Klamath Project FERC Project No. 14803 Reservoir Area Management Plan | Technical Report | Lower Klamath | Lower Klamath | 180102 | This Reservoir Area Management Plan identifies the management measures for the restoration, monitoring, and adaptive management of the lands underlying the Lower Klamath Project reservoirs and surrounding areas, that the Renewal Corporation will implement as part of the Proposed Action. The Renewal Corporation has prepared 16 Management Plans for FERC’s review and approval as conditions of a license surrender order. These Management Plans were | Reservoir, Lower Klamath | |
2021 | Klamath River Renewal Corporation, McMillen Jacobs Associates | Lower Klamath Project FERC Project No. 14803 Hatcheries Management and Operations Plan | Technical Report | Hatcheries | Lower Klamath | 180102 | This Hatcheries Management and Operations Plan is the DDP fish propagation component the Renewal Corporation will implement as part of the Proposed Action. At the recommendation of the National Marine Fisheries Service and the California Department of Fish and Wildlife, the Renewal Corporation will move hatchery operations to Fall Creek Fish Hatchery, replacing operations at Iron Gate Fish Hatchery. In addition to the information contained in this Hatcheries Management and Operations Plan, hatchery operations will be conducted in general accordance with regulatory authorizations, including but not limited to the National Marine Fisheries Service’s Biological Opinion for the Proposed Action and the Hatchery and Genetic Management Plan for Iron Gate Hatchery Coho Salmon or as amended. The Renewal Corporation has prepared 16 Management Plans for FERC’s review and approval as conditions of a license surrender order. These Management Plans were developed in consultation with federal, state and county governments and tribes. | Hatcheries Management, Lower Klamath, | |
2021 | Klamath River Renewal Corporation | Lower Klamath Project FERC Project No. 14803 Aquatic Resources Management Plan | Technical Report | Adaptive Management, Dam Removal, Monitoring Programs, Other threatened fishes, Salmon | Lower Klamath | 180102 | The Lower Klamath Project (Project) (FERC No. 14803) consists of four hydroelectric developments on the Klamath River: J.C. Boyle, Copco No. 1, Copco No. 2, and Iron Gate (Figure 1-1). Specifically, the reach between J.C. Boyle dam and Iron Gate dam is known as the Hydroelectric Reach. In September of 2016, the Renewal Corporation filed an Application for Surrender of License for Major Project and Removal of Project Works, FERC Project Nos. 2082- 063 & 14803-001 (License Surrender). The Renewal Corporation filed the License Surrender application as the dam removal entity for the purpose of implementing the Klamath River Hydroelectric Settlement (KHSA). In November of 2020, the Renewal Corporation filed its Definite Decommissioning Plan (DDP) as Exhibits A-1 and A-2 to its amended License Surrender application. The DDP is the Renewal Corporation’s comprehensive plan to physically remove the Lower Klamath Project and achieve a free-flowing condition and volitional fish passage, site remediation and restoration, and avoidance of adverse downstream impacts (Proposed Action). The Limits of Work is a geographic area that encompasses dam removal related activities in the Proposed Action and may or may not expand beyond the FERC boundary associated with the Lower Klamath Project. | FERC, Lower Klamath Project | |
2013 | U.S. Department of the Interior, U.S. Department of Commerce, National Marine Fisheries Service | Klamath Dam Removal Overview Report for the Secretary of the Interior. An assessment of science and technical information | Technical Report | Dam Removal | Klamath Basin | 180102 | The Klamath Basin covers over 12,000 square miles in southern Oregon and northern California (see Figure ES-1) and contains natural resources and economic opportunities related to fisheries, farming, ranching, hydroelectric power, timber harvest, mining, and recreation. These resources and opportunities have economically sustained many communities throughout the basin for decades. But development of these resources has not been without problems. For example, construction of PacifiCorp’s hydroelectric dams (see Figure ES-1) has blocked fish passage to the upper basin for nearly 100 years and these dams adversely affect downstream water quality and water temperatures. Large-scale development of agriculture and ranching operations has also affected water availability and water quality with impacts on fisheries and other resources; Reclamation’s Klamath Project is the largest irrigation project in the basin, serving up to 235,000 acres of farmland (see Figure ES-2). The Klamath Basin is also home to six Federally recognized Indian tribes who depend on many of these same natural resources to support their way of life and spiritual wellbeing, as they have for thousands of years. The basin’s natural resources, including abundant and reliable supplies of fish, clean water, and terrestrial plants and animals, are central to Indian cultural identity. The availability and quality of some of these critical natural resources have been adversely affected by development in the basin. | dam removal | |
2019 | TRRP | 2019 Annual Report Trinity River Restoration Program | Technical Report | Adaptive Management, Habitat Restoration, Monitoring Programs, Salmon, Water Allocation & Rights | Trinity River | 180102 | The Trinity River Restoration Program (TRRP) is a partnership comprised of Federal, State, Tribal, and Trinity County entities that collaborate to restore the • Hoopa Valley Tribe (HVT) This 2019 annual report highlights accomplishments achieved throughout the year as well as the extensive planning activities, environmental permitting, and monitoring efforts across disciplines, including upcoming synthesis reports. These comprehensive assessments on various performance measures have been underway for the past several years as part of TRRP’s work to provide quality science and modelling that will better inform future actions. To learn more about the progress on Trinity River restoration and to review more detailed reports please visit TRRP.net. | TRRP, Trinity River Restoration Program | |
2018 | Shasta Valley Resource Conservation District, Klamath Basin Monitoring Program, North Coast Regional Water Quality Control Board | Shasta River Watershed Stewardship Report | Technical Report | Adaptive Management, Land Management & Irrigation, Monitoring Programs, Salmon, Water Allocation & Rights, Water Quality | Mid Klamath | 180102 | The Shasta River Watershed Stewardship Report is a non‐regulatory document that identifies successful stewardship actions and presents a roadmap for future stewardship actions to continue to improve water quality conditions in the Shasta River watershed. The Shasta River Watershed Stewardship Report This report is a pilot project of the Klamath Basin Monitoring Program (KBMP) intended to promote the use of science‐based assessment to guide water quality improvement activities and projects. The Shasta Valley Resource Conservation District (SVRCD) has coordinated partnerships with local landowners, local agencies, state and federal agencies, tribes, and other non‐governmental organizations for the development of this report and to begin the development of a watershed stewardship framework. The watershed stewardship framework is based on partnerships coalesced around shared environmental outcomes, respect for the working landscape, and a voluntary commitment to collaboration. An anticipated benefit of the proposed watershed stewardship approach includes increased sharing of information on actions and projects completed by participants to track the progress made in the Shasta River watershed. Another benefit of this watershed stewardship coordination report is the increased level of identifying the shared funding by participants on mutually beneficial projects. | Shasta River Watershed, watershed scale, monitoring | |
2020 | Salmon River Restoration Council | Salmon River Community Restoration Program Annual Work Plan | Technical Report | Habitat Restoration, Invasive Species, Monitoring Programs, Salmon, Water Quality | Lower Klamath | 180102 | In 1992, a group of Salmon River community members received support from the Klamath River Fisheries Task Force through the Klamath Forest Alliance to host a series of cooperative workshops with the fisheries managers and community leaders for the local communities in the Salmon River subbasin. These workshops were aimed at increasing local awareness to help protect and restore the dwindling populations of spring Chinook salmon in the Salmon River. The local community response was overwhelmingly positive and illegal harvest of these species was subsequently reduced by an estimated 85%. In response to the local community's desire to protect and restore the Salmon River anadromous fisheries, the Salmon River Community Restoration Program was created in 1993. The Program enlisted support by: Through the vehicle of the Community Restoration Program, local involvement and broadened volunteer efforts increased and led to the formation of the Salmon River Restoration Council, which became a 501 (c)(3) non-profit corporation in 1995. To date the SRRC has sponsored more than 2,098 restoration-related workshops, workdays, and field trips. Community members, staff, technical specialists, and others have contributed over 107,607 volunteer hours to watershed restoration activities. These activities have helped to increase coordination and cooperation between diverse stakeholders. | Restoration, Salmon River | |
2002 | Don Elder, Brenda Olson, Alan Olson, Jim Villeponteaux, Peter Brucker | Salmon River Subbasin Restoration Strategy: Steps to Recovery and Conservation of Aquatic Resources | Technical Report | Dam Removal, Habitat Restoration, Salmon | Lower Klamath | 180102 | This strategy aims to accelerate rehabilitation of watershed conditions within the Salmon River subbasin by targeting collaborative restoration and protection efforts at high priority drainages. Using an ecosystem-based foundation, the proposed approach focuses on restoring the biological, geologic and hydrologic processes which ultimately shape the quality of aquatic habitat within the subbasin. Building upon information gathered through watershed analyses, transportation planning documents (road access and travel management plans or roads analysis process), and other administrative investigations, this strategy articulates an action plan focused upon reduction of upslope hazards in drainages retaining high quality aquatic habitat and intact native fish communities. This approach embraces the philosophy that protection of healthy watersheds and initiating preventative actions where water resources are threatened provides the most cost-effective path to meeting anadromous fish recovery goals. Multi-year restoration objectives as well as recommendations on target watershed conditions are included in this action strategy. Implementation of this action plan will result in conditions, which leave the Salmon River subbasin less vulnerable to the adverse effects of future floods and severe wildfire. Comprehensive roads and fuels treatments, applied subbasin wide, are estimated to cost $48 million, emphasizing the critical need to employ a priority base strategy for future restoration investments. | ||
2008 | Toz Soto, Michael Hentz, Will Harling | Mid-Klamath Subbasin Fisheries Resource Recovery Plan | Technical Report | Dam Removal, Habitat Restoration, Monitoring Programs, Other threatened fishes, Salmon | Mid Klamath | 180102 | The Klamath River Fisheries Task Force determined the need for individual plans from the Klamath River subbasins that were identified in their 1991 Long Range Plan (Kier Associates, 1991). The Middle Klamath subbasin is defined as the portion of the Klamath River watershed encompassing all sub-watersheds (excluding the Salmon River, Scott River and Shasta River) between the Trinity River (River Mile 43.4) and Iron Gate Dam (River Mile 190.1). The primary goal for this plan is to identify and propose actions to improve Middle Klamath River subbasin contribution to the Klamath River Basin’s anadromous fish. This working draft identifies actions needed, whether it may be on-the-ground manipulation of impaired aquatic or terrestrial conditions, or more passive protection of unimpaired conditions. Aquatic conditions and fisheries resources in the Klamath Basin have steadily declined for the past 150 years, and more rapidly during the past 50 years. The Klamath River fishery has a very complex and wide variety of problems, and public concerns about deteriorating salmon stocks have heightened in light of the 2002 large-scale fish kill that occurred in the Klamath River system. This plan only addresses problems within the scope of the Middle Klamath subbasin. Basin wide fisheries recovery will take a cooperative planned effort from all subbasins and Basin stakeholders. Declines in Klamath River anadromous fish have impaired river ecosystem function, and have equally impacted tribal, sport and commercial fisheries. In addition, other land and water uses are restricted by management regulations that have been put into effect in response to these ecological system failures. Combined, these factors make planning recovery actions complex and challenging. The Middle Klamath River subbasin is especially challenging due to its large size and diversity in terms of landscape, land jurisdiction, socio-economic conditions, politics, and cultural representation. | Recovery Action Plan, Fisheries Resource, Mid-Klamath | |
2020 | Yurok Tribal Fisheries Program, Yurok Tribal Watershed Restoration Program | Lower Klamath River Sub-Basin Watershed Restoration Plan | Technical Report | Habitat Restoration, Lower Klamath, Salmon, Steelhead/Rainbow Trout, Water Quality | Lower Klamath | 180102 | The Yurok People have inhabited the lands of and sustained themselves upon the resources of the Klamath River for centuries. They were probably the first “commercial” fishermen in the region as they sometimes traded their surplus catch, as well as fishing rights and territory, for needed supplies and regalia. Indeed, the Tribe’s entire culture is largely based upon the Klamath River and its associated fish populations. The Yurok Tribe is the largest aboriginal tribe in the state of California, with approximately 4,000 enrolled members. The Yurok people are amongst the few aboriginal inhabitants in California with a land base. The Tribe’s ancestral lands make up an area of approximately 320,000 acres. What is now the Yurok Indian Reservation was created by federal actions between 1853 and 1891. The Reservation encompasses a strip of land one mile wide on each side of the Klamath River, from just upstream of its confluence with the Trinity River at Weitchpec, California, to its mouth at the Pacific Ocean. At this time, 5,090 acres of the 59,000-acre Yurok Reservation are held in trust status. Simpson Timber Company owns more than 85% of the land within the boundaries of the reservation, as well as the surrounding ancestral lands. A smaller portion of the Reservation consists of public lands managed by Redwood National/State Parks, the U.S. Forest Service (USFS), the Bureau of Land Management (BLM), and a few other private landholdings. Today, only a fraction of historic anadromous fish runs return to spawn in the Klamath River and its tributaries. Although many factors have contributed to these declines in native fish runs, degradation of freshwater habitat has been pervasive in the Klamath River Basin. Kier and Associates (1991) note that “the fish habitats of the basin have been greatly diminished in extent and value in the past century. | Klamath River, Yurok People, Lower Klamath River, Watershed Restoration Plan | |
2021 | Mark Petrie, J. Patrick Donnelly, Matthew E. Reiter, Johnnie Moore, Greg Yarris | Pacific Flyway Integrated Landscape Conservation: Meeting the Needs of Waterfowl and Shorebirds in a New Era of Water Scarcity | Technical Report | Climate Change Effects, Hydrology, Land Management & Irrigation, Water Allocation & Rights | United States | The Klamath Basin, Central Valley, and Southern Oregon and Northeastern California (SONEC) collectively support over 60% of all dabbling duck use in the Pacific Flyway between September and May and are critical landscapes for migratory shorebirds. During fall, these birds move through the Klamath Basin on their way to wintering grounds in the Central Valley. By March and April, most birds have departed the Central Valley and are found on spring staging habitats throughout SONEC and the Klamath Basin. In addition, these areas provide regionally important breeding and molting habitats for waterfowl, migration, molting and wintering habitat for shorebirds, and breeding habitat for waterbirds, further connecting cross-seasonal habitat reliance among landscapes. The contiguous nature of these landscapes (see Figure 1), combined with the ability of birds to move quickly between them, requires an integrated conservation approach across their boundaries. To date, conservation planning for waterfowl and other wetland dependent birds has been conducted by the Central Valley Joint Venture (CVJV) in the Central Valley, the Intermountain West Joint Venture (IWJV) in SONEC, and the Klamath Basin National Wildlife Refuge (NWR) Complex for refuge lands in the Klamath Basin (which was later adopted by the IWJV). As is the norm for JVs across North America, the CVJV and IWJV have developed their conservation plans independent of one another. These landscapes share three important characteristics: (1) threats to water supplies that have traditionally provided key habitat (vulnerability), (2) an overwhelming reliance on managed water delivery systems (vulnerability), and (3) an essential partnership between managed wetlands and irrigated agriculture (part of any solution). | Integrated Landscape Conservation, Waterfowl, Shorebirds, | ||
2021 | J. Patrick Donnelly | Managing risk and maximizing return; decision support for conservation of dynamic wetland landscapes in southern Oregon and northeast California | Technical Report | Miscellaneous | United States | Managing risks associated with conservation investments has become an essential component of contemporary resource planning. Successful investments now demand outcome-based evaluations and properly managed portfolios to justify public expenditures necessary to communicate advances in natural resource conservation. These expectations pose new challenges to landscape conservation goals that often depend on maintenance of ecological processes that are inherently dynamic and difficult to predict. Across the western United States enormous sums of money have been spent on the protection and restoration of wildlife habitats, yet few conservation groups link past expenditures to beneficial outcomes. Sustaining future conservation funding will depend on resource managers’ ability to minimize investment risk and demonstrate outcomes by incorporating ecological uncertainties into the planning process (Adams et al. 2014). The seasonal dynamics of water resources poses specific challenges to conservation strategies that assume static returns on investments made in wetland systems. Climatic variability in the West drives annual precipitation and snowpack that falls below 75% of normal one of five years (Rajagopalan and Lall 1998). Snowpack is the driver of natural and working wetlands (i.e. flood irrigated hay meadows) that rely on melt water from mountain snows to flood productive valley bottoms during spring and early summer. The stochastic nature of climate underlying wetland flooding in the West leads to unpredictability in timing and duration of seasonal inundation that influences trends in range productivity and wildlife habitats. Complex irrigation infrastructure (i.e. canals, head gates, small dams) and water rights governing irrigation practices can further compound predictability of private working wetlands that encompass the majority of wetland resources in the West (Donnelly et al. 2018). | conservation, wetland landscapes, southern Oregon, northeast California | ||
2020 | J. Patrick Donnelly, Sammy L. King, Nicholas L. Silverman, Daniel P. Collins, Eduardo M. Carrera-Gonzalez, Alberto Lafón-Terrazas, Johnnie N. Moore | Climate and human water use diminish wetland networks supporting continental waterbird migration | Academic Article | Climate Change Effects, Land Management & Irrigation | United States | Migrating waterbirds moving between upper and lower latitudinal breeding and wintering grounds rely on a limited network of endorheic lakes and wetlands when crossing arid continental interiors. Recent drying of global endorheic water stores raises concerns over deteriorating migratory pathways, yet few studies have considered these effects at the scale of continental flyways. Here, we investigate the resiliency of waterbird migration networks across western North America by reconstructing long-term patterns (1984–2018) of terminal lake and wetland surface water area in 26 endorheic watersheds. Findings were partitioned regionally by snowmelt- and monsoon-driven hydrologies and combined with climate and human water-use data to determine their importance in predicting surface water trends. Nonlinear patterns of lake and wetland drying were apparent along latitudinal flyway gradients. Pervasive surface water declines were prevalent in northern snowmelt watersheds (lakes −27%, wetlands −47%) while largely stable in monsoonal watersheds to the south (lakes −13%, wetlands +8%). Monsoonal watersheds represented a smaller proportion of total lake and wetland area, but their distribution and frequency of change within highly arid regions of the continental flyway increased their value to migratory waterbirds. Irrigated agriculture and increasing evaporative demands were the most important drivers of surface water declines. Underlying agricultural and wetland relationships however were more complex. Approximately 7% of irrigated lands linked to flood irrigation and water storage practices supported 61% of all wetland inundation in snowmelt watersheds. In monsoonal watersheds, small earthen dams, meant to capture surface runoff for livestock watering, were a major component of wetland resources (67%) that supported networks of isolated wetlands surrounding endorheic lakes. | agricultural irrigation, climate, endorheic lake and wetland desiccation, flyway connectivity, Mexico, migratory waterbirds, North America, wetland ecosystem collapse | ||
2019 | Donnelly, J. P., D. E. Naugle, D. P. Collins, B. D. Dugger, B. W. Allred, J. D. Tack, and V. J. Dreitz. | Synchronizing conservation to seasonal wetland hydrology and waterbird migration in semi-arid landscapes | Academic Article | Hydrology, Land Management & Irrigation | United States | In semi-arid ecosystems, timing and availability of water is a key uncertainty associated with conservation planning for wetland-dependent wildlife. Wetlands compose only 1–3% of these landscapes; however, large populations of migratory waterbirds rely on these wetlands to support energetically | conservation, flood irrigation, migration chronology, ranching, seasonal wetland, semi-arid; water, waterfowl. | ||
2021 | Donnelly J. P., S. L. King, J. Knetter, J. H. Gammonley, V. J. Dreitz, B. A. Grisham, M. C. Nowak, and D. P. Collins | Migration efficiency sustains connectivity across agroecological networks supporting sandhill crane migration | Academic Article | Miscellaneous | United States | 180102 | Preserving avian flyway connectivity has long been challenged by our capacity to meaningfully quantify continental habitat dynamics and bird movements at temporal and spatial scales underlying long-distance migrations. Waterbirds migrating hundreds or thousands of kilometers depend on networks | agricultural irrigation, agroecology, flyway connectivity, migratory networks, network analysis, North America, sandhill crane; water scarcity, waterbirds; wetlands | |
2019 | David Gaeuman and Robert Stewart, Trinity River Restoration Program | Trinity River Restoration Program – DRAFT Technical Report: TR-TRRP-2019-2 WY2015 Trinity River Gravel Augmentation Implementation Monitoring Report | Technical Report | Monitoring Programs | Klamath Basin | 180102 | The loss of a natural gravel supply to the Trinity River downstream from Lewiston Dam has been implicated as contributing to decreases in salmonid populations following dam construction. A supply of mobile gravel is necessary to sustain the fluvial processes that create diverse physical habitats that support all salmon life stages, as well as a wide range of other riverine species. Artificial gravel augmentation is among the strategies employed by the Trinity River Restoration Program (TRRP) to recover salmonid populations in the river. However, the rate and manner in which augmented gravel will alter downstream habitats, as well as the potential risks associated with gravel augmentation, are imperfectly known. This report presents the results of site-specific monitoring performed at two sites where gravel augmentations were implemented in water year (WY) 2015, as well as an investigation of photographic methods for assessing system-wide changes in substrate conditions over time. In 2015, repeat topographic surveys were conducted to assess geomorphic responses to high-flow gravel injections at the Diversion Pool, where 1000 yd3 of gravel was injected during the spring high-flow release, and at Lowden Ranch, where 680 yd3 of gravel was injected. Earlier studies have indicated that most of the gravel injected at the Diversion Pool prior to 2015 was deposited on the inside of a bend a short distance downstream from the injection point. | ||
2020 | Jeffrey J. Duda, Marshal S. Hoy, Dorothy M. Chase, George R. Pess, Samuel J. Brenkman, Michael M. McHenry, Carl O. Ostberg | Environmental DNA is an effective tool to track recolonizing migratory fish following large-scale dam removal | Academic Article | Other threatened fishes, Redband Trout, Salmon, Steelhead/Rainbow Trout | United States | 180102 | Environmental DNA (eDNA) has emerged as a potentially powerful tool for use in conservation and resource management, including for tracking the recolonization dynamics of fish populations. We used eDNA to assess the effectiveness of dam removal to restore fish passage on the Elwha River in Washington State (USA). Using a suite of 11 species-specific eDNA polymerase chain reaction (PCR) assays, we showed that most targeted anadromous species (five Pacific Salmon species and Pacific Lamprey) were able to pass upstream of both former dam sites. Multiscale occupancy modeling showed that the timing and spatial extent of recolonization dif-fered among species during the four years of post-dam removal monitoring. More abundant species like Chinook Salmon and Coho Salmon migrated farther into the upper portions of the watershed than less abundant species like Pink Salmon and Chum Salmon. Sampling also allowed assessment of potamodromous fish species. Bull Trout and Rainbow Trout, ubiquitous species in the watershed, were detected at all sampling locations. Environmental DNA from Brook Trout, a non-native spe-cies isolated between the dams prior to dam removal, was detected downstream of Elwha dam but rarely upstream of the Glines Canyon Dam suggested that the species has not expanded its range appreciably in the watershed following dam removal. We found that eDNA was an effective tool to assess the response of fish populations to large-scale dam removal on the Elwha River. | anadromous, Bull Trout, dam removal, eDNA, Elwha River, Lamprey, Pacific Salmon, recolonization | |
2021 | U.S. Fish and Wildlife Service, Trout Unlimited, Klamath Watershed Partnership, The Klamath Tribes, Oregon Department of Environmental Quality, The Nature Conservancy, and the North Coast Regional Water Quality Control Board of California | The Upper Klamath Basin Watershed Action Plan | Technical Report | Habitat Restoration, Other threatened fishes, Water Quality | Upper Klamath | 180102 | The Upper Klamath Basin (UKB) is home to numerous native fish species of conservation, cultural, and economic importance. A number of factors related to land use practices and a changing climate have led to a decline in water quality, fish populations, and riparian and aquatic habitat in the UKB. Several past efforts, including the UKB Comprehensive Agreement, Total Maximum Daily Loads developed by regulatory entities, water quality management plans and Endangered Species Act recovery plans, have identified the need for a coordinated plan or strategy to prioritize and implement restoration actions to support fish population recovery, water quality improvements, and restoration of riparian and riverine process and function in the UKB. The UKB Watershed Action Plan (UKBWAP) provides science-based guidance regarding types of restoration projects necessary to address specific impairments to riverine and riparian process and function, and develop monitoring regimes tied to quantifiable restoration objectives at multiple scales. The UKBWAP includes a reach-scale watershed condition assessment that prioritizes reaches (based on degree of impairment) for landowner engagement and subsequent implementation of voluntary restoration activities and guidelines for implementation of specific voluntary restoration activities, such as riparian fencing and riparian grazing management. Additionally, the UKBWAP outlines a process of adaptive management to refine condition assessments, recommended restoration actions, and monitoring approaches as new information becomes available. The UKBWAP was developed and will continue to be refined by a team of local restoration professionals representing the U.S. Fish and Wildlife Service, Trout Unlimited, Klamath Watershed Partnership, The Klamath Tribes, Oregon Department of Environmental Quality, The Nature Conservancy, and the North Coast Regional Water Quality Control Board of California. | Monitoring, Restoration, water quality, fish populations, UKB Watershed Action Plan (UKBWAP) | |
2020 | Kleinschmidt Associates | Exhibit A-1 Definite Decommissioning Plan | Technical Report | Dam Removal | Klamath Basin | 180102 | The Lower Klamath River Project (Lower Klamath Project) (FERC No. 14803) consists of four hydroelectric developments on the Klamath River: J.C. Boyle, Copco No. 1, Copco No. 2, and Iron Gate (Figure 1-1). The Klamath River Renewal Corporation (Renewal Corporation) has applied to the Federal Energy Regulatory Commission (FERC) to surrender the license for the Lower Klamath Project for the purpose of implementing the Klamath River Hydroelectric Settlement (KHSA). The Definite Decommissioning Plan (DDP) is filed as Exhibit A-1 of the Amended Surrender Application. This DDP is the Renewal Corporation’s comprehensive plan to physically remove the Lower Klamath Project and achieve a free-flowing condition and volitional fish passage, site remediation and restoration, and avoidance of adverse downstream impacts. This DDP describes how the Renewal Corporation will implement, upon a license surrender order, the activities associated with the Proposed Action. Exhibit A-2 presents 60% design specifications to implement the Proposed Action. This DDP includes a narrative discussion of those 60% design specifications as well as the results of value engineering that will be presented in our 90% Design submittal, which was submitted September 18, 2020 to the Lower Klamath Project Board of Independent Consultants (BOC) for its informal review. Concurrent with the filing of its Amended Surrender Application, the Renewal Corporation requested formal review of the 90% Design Specifications by the BOC, FERC and the California Division of Safety of Dams (DSOD). The Amended Surrender Application will be updated (as needed) on February 26, 2021 based on the 90% Design Specifications and any comments received from the BOC, FERC and DSOD. | Lower Klamath River Project , Dam removal | |
2021 | Yurok Tribe, Karuk Tribe, Genzoli, L., Bandrowski, D.J., Fricke, S., McCovey, B., Hillemeier, D., Belchik, M., and Soto, T., | Klamath Dam Removal Science Coordination Workshop Summary Report | Technical Report | Dam Removal | Klamath Basin | 180102 | Historically, the Klamath River was the third largest salmon-producing river on the West Coast of the continental United States. The river’s rich resources and surrounding watershed have sustained native people since time immemorial. The health of the Klamath Basin ecosystem is intertwined with the well-being and identity of native people throughout the watershed, including the Yurok and Karuk people. Agricultural development, water diversions, resource extraction, over-fishing, and dams have degraded the river ecosystem and caused dramatic declines to native fish populations. The indigenous people of the Klamath Basin have suffered greatly as the river’s health and fisheries have declined. In a historic effort to restore ecosystem function and fisheries, four Klamath River hydroelectric dams are slated for removal, representing the largest dam removal effort in US history. Despite the unprecedented scope of the Klamath dam removal, formal coordination of dam removal research and monitoring has been limited. The Klamath River Basin, along with the dams slated for removal, straddle two states, a prominent mountain range, and the jurisdiction and interest of numerous state, federal, and tribal natural resource and land management agencies. With less than two years until the anticipated start of dam removal (2023 as of the time this publication), there is an urgent need to identify and prioritize research questions, plan data collection that will address these pressing questions, and begin collecting data in an efficient and well-coordinated manor. | dam removal, Klamath River | |
2018 | Eloise Kendy, Bruce Aylward, Laura S. Ziemer, Brian D. Richter, Bonnie G. Colby, Theodore E. Grantham, Leslie Sanchez, Will B. Dicharry, EmilyM. Powell, Season Martin, Peter W. Culp, Leon F. Szeptycki, and Carrie V. Kappel | Water Transactions for streamflow restoration, water supply reliability, and rural economic vitality in the western united states | Academic Article | Habitat Restoration, Water Allocation & Rights | United States | Across the western United States, environmental water transaction programs (EWTPs) restore environmental flows by acquiring water rights and incentivizing changes in water management. These programs have evolved over several decades, expanding from relatively simple two-party transactions to multiobjective deals that simultaneously benefit the environment and multiple water-using sectors. Such programs now represent an important water management tool and provide an impetus for collaboration among stakeholders; yet, most evaluations of their effectiveness focus exclusively on environmental outcomes, without adequate attention to impacts on other water users or local economies. To understand how these programs affect | environmental flows, water scarcity economics, water markets, sustainability, water allocation, environmental indicators | ||
2020 | unknown | Species Distribution Maps | Spatial Data | Other threatened fishes, Salmon, Steelhead/Rainbow Trout | United States | Species Distribution Maps | |||
2020 | Charles E. Petrosky, Howard A Schaller, Eric S. Tinus, Timothy Copeland, Adam J. Storch | Achieving Productivity to Recover and Restore Columbia River Stream- Type Chinook Salmon Relies on Increasing Smolt-To-Adult Survival | Academic Article | Habitat Restoration, Salmon | United States | We analyzed and compared productivity and survival rates of populations of stream-type Chinook Salmon Oncorhynchus tshawytscha from the upper and middle ranges of their distribution in the Columbia River basin. These two groups of populations undergo vastly different exposures during migration through the Federal Columbia River Power System (FCRPS). Declines of the Snake River populations, listed as threatened under the U.S. Endangered Species | Chinook, Columbia River, Restore, Recover, | ||
2017 | J.C. Jolley, G.S. Silver, J.E. Harris, T.A. Whitesel | Pacific lamprey recolonization of a Pacific Northwest river following dam removal | Academic Article | Other threatened fishes | United States | Recolonization of Pacific lampreys Entosphenus tridentatus into historically used freshwater habitats in the United States Pacific Northwest was evaluated in the White Salmon River basin after removal of Condit Dam. Pacific lamprey population declines are of concern, and passage barrier removal is often recommended for conservation. Condit Dam on the White Salmon River in Washington was a complete barrier to fish migrating upstream for nearly 100 years, was breached in 2011, and was removed by 2012. Distribution of larval Pacific lampreys was estimated before and after removal of Condit Dam using either backpack or deepwater electrofishing. Larval detection probabilities were calculated for the basin, and sample efforts were refined to ensure at least 80% confidence that larvae were absent when not detected. Pacific lampreys were not present upstream of Condit Dam before it was removed but were present in areas downstream of the dam. After dam removal, Pacific lamprey larvae were collected upstream of the former dam site from four reaches of the mainstem White Salmon River, indicating a recent recolonization event. Pacific lampreys were absent from the river mouth area before the dam was removed but were found in newly created habitat at the mouth after dam removal. Pacific lampreys naturally recolonized the White Salmon River basin within a few years after dam removal. Removing dams and providing passage opportunity can allow Pacific lampreys to distribute into vacant areas and may help reverse population declines. | dam removal, detection probability, Entosphenus, occupancy sampling, Pacific lamprey, recolonization | ||
2017 | Mary L. Moser, Rebecca L. Paradis | Pacific Lamprey Restoration in the Elwha River Drainage Following Dam Removals | Academic Article | Habitat Restoration | United States | Dams and other man-made obstacles to fish passage fragment riverine habitats and re-structure fish communities. Many of these structures provide no means of fish passage or only partial passage for a few species. This is particularly problematic for diadromous and potamodromous species that must move between rearing, feeding, and spawning habitats to complete their normal life cycle. In the United States and in Europe, many of these structures have become obsolete, and as a consequence, dam removal has become a feasible fish restoration solution in many areas (Jackson and Moser 2012, Hogg et al. | dams, removal, fish passage | ||
2017 | Thomas P. Quinn, Morgan H. Bond, Samuel J. Brenkman, Rebecca Paradis, Roger J. Peters | Re-awakening dormant life history variation: stable isotopes indicate anadromy in bull trout following dam removal on the Elwha River, Washington | Academic Article | Dam Removal | United States | Migratory species take advantage of multiple habitats during their life cycle to optimize growth, survival, and reproduction. However, migration also makes | Anadromy, Char, Dam Removal, Partial migration,Salmonid, Stable isotopes | ||
2014 | Scott River Watershed Council, Siskiyou RCD | Scott River Watershed Restoration Strategy & Schedule | Technical Report | Habitat Restoration | Scott River | 180102 | The purpose of this “Strategy & Schedule” is to assess all existing information (both local information and peer-reviewed literature) The objectives of this plan are to: identify locations in the Scott River and tributaries most likely to benefit to riparian restoration measures, identify specific methods most appropriate for watershed restoration in the Scott Valley, identify reach specific design criteria, identify and prioritize project areas (including identification of willing landowners), develop a proposed schedule for restoration, and identify potential funding sources. | Scott River, TMDL, Watershed Restoration | |
2009 | Siskiyou RCD | Scott River Riparian Restoration Analysis | Technical Report | Habitat Restoration | Scott River | 180102 | Landowners and land managers in the Scott River Watershed have been proactively working to protect, restore and enhance the aquatic and riparian ecosystems for the past several decades. Concerns over the status of the Klamath River’s anadromous fisheries have been a major impetus to restoration efforts instream and in the riparian corridor. The Scott River provides spawning and rearing habitat for a significant population of coho salmon (Oncorhynchus kisutch), Chinook salmon (O. tshawytscha), and steelhead trout (O. mykiss). The majority of anadromous habitat in the Scott River is within privately owned lands in the Scott Valley. The entire mainstem of the Scott River is privately owned for 38 miles (RM 57.1 to RM 19.1), as well as most of the lower reaches of the tributaries used by anadromous salmonids. Many of the landholders are small parcels which lack the financial resources to implement large scale restoration projects. This ownership pattern makes coordination and planning of effective restoration efforts complex and time consuming. It is the goal of this analysis to evaluate the effectiveness of existing riparian protection and enhancement projects throughout the Scott Valley. This evaluation of previous effort is used to generate a series of recommended restoration and protection techniques that have worked in different areas of the watershed. Additionally, an evaluation of data pertaining to the current riparian condition, the distribution of target species and the potential for successful riparian recruitment has been performed to help prioritize future riparian restoration efforts. | Scott River, Riparian, Restoration, Analysis | |
2012 | Damon Goodman, Stewart Reid, USFWS Western Lamprey Conservation Team | Pacific Lamprey (Entosphenus tridentatus) Assessment and Template for Conservation Measures in California | Technical Report | Other threatened fishes | United States | Results of the California Assessment under the Pacific Lamprey Conservation Initiative This assessment indicates that Pacific Lamprey populations in California had been extirpated from at least 55% of their historical habitat north of Point Conception by 1985. The primary threat responsible for extirpations was large impassible dams, which excluded migrating adults from access to high quality spawning and rearing habitat in the foothills and higher elevations. In southern California, recent surveys and review of available information also indicate that no viable populations of Pacific Lamprey currently occupy drainages south of the Big Sur River on the central coast. Some populations have been lost due to drainage-specific threats, however, Most of the remaining occupied California watersheds are rated at ‘imperiled’ or 'vulnerable' in the NatureServe rankings. This result suggests both the urgency for action and opportunities for recovery with implementation of appropriate conservation measures. The principal threats affecting many populations include passage barriers (mainstem and tributary), dewatering or flow management, and water quality/habitat issues associated with high water temperatures, low flow and nutrient loading. Additional threats, generally low to moderate in scope or severity, included stream habitat degradation, possible predation (varying by sub-region), and “small population” effects in the south. Ongoing actions such as distribution and habitat surveys, barrier | Pacific Lamprey, Populations, California | ||
2020 | Mark E. Hereford, William R. Tinniswood, Benji S. Ramirez, Oregon Department of Fish and Wildlife | Fish Distribution at the HUC12 scale in the Upper Klamath Lake sub-basin | Technical Report | Salmon, Steelhead/Rainbow Trout, Suckers | Upper Klamath | 180102 | Fish Distribution at the HUC12 scale in the Upper Klamath Lake sub-basin maps | Distribution, HUC12, Upper Klamath Lake | |
2016 | T. Nightengale, A. Shelly & R. Beamesderfer | FINAL REPORT Lower Deschutes River Macroinvertebrate & Periphyton Study | Technical Report | Aquatic Habitat / Invertebrates / Insects | United States | This report describes objectives, methods and results for a macroinvertebrate study in the Deschutes River. This study is identified by the Pelton Round Butte Project License and was conducted consistent with a study plan developed in consultation with Portland General Electric and the Pelton Round Butte Fish Committee. A baseline study was conducted in 1999-2001, prior to the implementation of selective water withdrawal. This report summarizes results of two years of post-selective water withdrawal (SWW) sampling and a comparison with pre-SWW baseline sampling. Post-SWW sampling was conducted in October in 2013 and 2014, and April/May 2014 and April 2015. Sample sites included nine mainstem sites downstream of the Project, with seven sites coinciding with sites sampled in both years during the baseline study; two additional downstream sites (at Sandy Beach and Macks Canyon) to provide additional information further downstream of Maupin; and three upstream above-Project reference sites on each of the tributaries feeding into Lake Billy Chinook (Metolius, Middle Deschutes, and Crooked rivers), useful for identifying any long-term changes in conditions potentially independent of SWW effects. Macroinvertebrate samples were taken using a D-frame kick net with 500-micron mesh, collecting four kick samples (each approximately 2 ft2 in area) at each site. At 8 sites, the samples were composited in accordance with ODEQ protocols; at the other 4 sites, samples were kept separate as replicates, to facilitate statistical comparisons. Periphyton samples were also collected at all sample sites, with only one composite sample (10 rocks, approximately 125 cm2 in area total) to be taken at each site. | Macroinvertebrate, Periphyton | ||
2020 | Stillwater Sciences | DRAFT TECHNICAL MEMORANDUM MARCH 2020- Salmon River Floodplain Habitat Enhancement and Mine Tailing Remediation Project – Phase 2: Conceptual Design | Technical Report | Habitat Restoration | Klamath Basin, Lower Klamath | 180102 | The Salmon River Restoration Council (SRRC), in collaboration with the US Forest Service, Karuk Tribe Department of Natural Resources, and other State and Federal resource agencies, initiated the Salmon River Floodplain Habitat Enhancement and Mine Tailing Remediation Project (project) in 2014. The project is a collaborative, science-based process focused on increasing the long-term productivity of anadromous salmonids in the Salmon River by strategically restoring and enhancing aquatic and riparian floodplain habitats, geomorphic functions, and stream temperatures within lower gradient, predominantly alluvial reaches of the mainstem, North Fork, and South Fork Salmon River. The proposed restoration and enhancement actions are needed to support conservation and recovery of listed and at-risk salmonid and lamprey populations. Whereas the SRRC, USDA Forest Service, and their partners have addressed many of the high-priority fish passage barriers in tributaries and the treatable upslope sediment sources within the watershed, this project will directly address limiting aquatic and riparian habitat conditions within mainstem channel and floodplain areas. The Klamath National Forest is the lead federal agency for purposes of NEPA compliance. The CEQA lead agency has yet to be determined. | Salmon River Restoration Council (SRRC), Habitat Enhancement | |
2011 | Ronald M. Thom, Gregory D. Williams, Nathan R. Evans | Lower Columbia River and Estuary Habitat Restoration Prioritization Framework | Academic Article | Habitat Restoration | The Restoration Prioritization Framework was designed as a decision-making tool for the Lower Columbia River Estuary Partnership, to help identify the highest-priority sites for restoration. The underlying concepts are derived from regional applications of aquatic restoration theory. The framework uses the conceptual model that physical controlling factors (e.g., light, temperature, hydrology) drive the formation and maintenance of habitats and their ecological functions, and that stressors act on the controlling factors. The framework is two tiered and comprises 1) an overview of the concepts and description of framework tools; 2) a spreadsheet containing detailed data, formulas, and workflow for the actual site prioritization; and 3) a geographic information system (GIS) database containing source and processed geospatial datasets. In Tier I, the framework uses a GIS-based approach to evaluate impacts from a variety of human "stressors" such as diking, agriculture, overwater structures, and flow restrictions. Data processing derives priority scores, which are then relinked to the geographic sites in the GIS. In this manner, all of the data and tools employed can be analyzed and queried in a geospatial context. In addition to the core impact assessment, the framework includes tools to incorporate information on hydrologic connectivity and existing function into the priority screening. Specific restoration project proposals are evaluated in Tier II, using information on cost, expected functional change, site size, and predicted probability of success. Using this framework, the Lower Columbia River Estuary Partnership can screen for impacted areas, prioritize areas based on desired ecological criteria, and evaluate selected projects. | Lower Columbia River, Estuary Habitat Restoration Prioritization Framework | |||
2006 | N.R. Evans, R.M. Thom, G.D. Williams, J. Vavrinec, K.L. Sobocinski, L.M. Miller, A.B. Borde, V.I. Cullinan, J.A. Ward, C.W. May, C. Allen | Lower Columbia River Restoration Prioritization Framework | Technical Report | Habitat Restoration | The Restoration Prioritization Framework was designed as a decision-making tool for the Lower Columbia River Estuary Partnership, to help identify the highest priority sites for restoration. The Framework is composed of three parts, which are intended for use together: 1) an overview of the concepts and description of Framework tools (this document), 2) a Microsoft Excel™ workbook containing detailed data, formulas, and workflow for the actual site prioritization, and 3) a Geographic Information System (GIS) database containing source and processed geospatial datasets. The underlying concepts for this Framework were developed previously in the Bainbridge Island Nearshore Habitat Assessment, Management Strategy Prioritization, and Monitoring Recommendations (Williams et al. 2004) and An Ecosystem-Based Restoration Plan with Emphasis on Salmonid Habitats in the Columbia River Estuary (Johnson et al., 2003). The Prioritization Framework uses the conceptual model-based approach outlined in these documents to assign priority scores to sites. The conceptual model states that the physical controlling factors in a location drive the habitats that can form, and ultimately, the ecological functions that develop. The Framework uses this model to evaluate impacts to these controlling factors, using a variety of human impact “stressor” datasets, such as diking, agriculture, over-water structures, and flow restrictions. This assessment is fundamentally a GIS-based analysis. Impact data is compiled from georeferenced sources, and linked to specific geographic sites. Data processing and calculations are done in Excel to derive priority scores, which are then re-linked to the geographic sites in the GIS. In this manner, all of the data and tools employed can be analyzed and queried in a geospatial context. | Lower Columbia River, Restoration, Prioritization Framework, Decision-Making Tool | |||
2018 | Aiora Zabala , Chris Sandbrook, Nibedita Mukherjee | When and how to use Q methodology to understand perspectives in conservation research | Academic Article | Miscellaneous | United States | Understanding human perspectives is critical in a range of conservation contexts, for example, in overcoming conflicts or developing projects that are acceptable to relevant stakeholders. The Q methodology is a unique semiquantitative technique used to explore human perspectives. It has been applied for decades in other disciplines and recently gained traction in conservation. This paper helps researchers assess when Q is useful for a given conservation question and what its use involves. To do so, we explained the steps necessary to conduct a Q study, from the research design to the interpretation of results. We provided recommendations to minimize biases in conducting a Q study, which can affect mostly when designing the study and collecting | biodiversity conservation, conflict management, conservation policy, decision-making, governance, human perspectives, social research, values | ||
2012 | Justin Garwood | Historic and recent occurrence of Coho Salmon (Oncorhynchus kisutch) in California streams within the Southern Oregon/ Northern California Evolutionary Significant Unit | Academic Article | Salmon | United States | SONCC ESU Coho Salmon Status and Viability Assessment | coho salmon (Oncorhynchus kisutch), SONCC ESU, | ||
2018 | Jeanette K. Howard, Kurt A. Fesenmyer, Theodore E. Grantham, Joshua H. Viers, Peter R. Ode, Peter B. Moyle, Sarah J. Kupferburg, Joseph L. Furnish, Andrew Rehn, Joseph Slusark, Raphael D. Mazor, Nicholas R. Santos, Ryan A. Peek, Amber N. Wright | A freshwater conservation blueprint for California: prioritizing watersheds for freshwater biodiversity | Academic Article | Water Quality | United States | Conservation scientists have adapted conservation planning principles designed for protection of habitats ranging from terrestrial to freshwater ecosystems. We applied current approaches in conservation planning to prioritize California watersheds for management of biodiversity. For all watersheds, we compiled data on the presence/ absence of herpetofauna and fishes; observations of freshwater-dependent mammals, selected invertebrates, and plants; maps of freshwater habitat types; measures of habitat condition and vulnerability; and current management status. We analyzed species-distribution data to identify areas of high freshwater conservation value that optimized representation of target taxa on the landscape and leveraged existing protected areas. The resulting priority network encompasses 34% of the area of California and includes ≥10% of the geographic range for all target taxa. High-value watersheds supported nontarget freshwater taxa and habitats, and focusing on target taxa may provide broad conservation value. Most of the priority conservation network occurs on public lands (69% by area), and 46% overlaps with protected areas already managed for biodiversity. A significant proportion of the network area is on private land and underscores the value of programs that incentivize landowners to manage freshwater species and habitats. The priority conservation areas encompass more freshwater habitats/ha than existing protected areas. Land use (agriculture and urbanization), altered fire regimes, nonnative fish communities, and flow impairment are the most important threats to freshwater habitat in the priority network, whereas factors associated with changing climate are the key drivers of habitat vulnerability. Our study is a guide to a comprehensive approach to freshwater conservation currently lacking in California. Conservation resources are often limited, so prioritization tools are valuable assets to land and water managers. | conservation planning, freshwater biodiversity, protected areas, Zonation software, California | ||
2019 | Rania Taha, Jörg Dietrich, Alexandra Dehnhardt, Jesko Hirschfeld | Scaling Effects in Spatial Multi-Criteria Decision Aggregation in Integrated River Basin Management | Academic Article | Adaptive Management, Hydrology, Monitoring Programs | United States | For river basin management plans (RBMPs), measures are aggregated from smaller spatial units (e.g., water bodies) to the catchment or basin scale. River basin management plans measures in integrated management are evaluated using multiple criteria, e.g., ecological and socio-economiccriteria, etc. Therefore, aggregation often combines spatial analysis and multi-criteria decision analysis (MCDA). Herein, we investigate: (1) the effect of applying different aggregation pathways on the outcome of the RBMP using the technique for order of preference by similarity to ideal solution (TOPSIS) as an MCDA method, (2) the scaling effects considering water body, sub-catchment, and river basin scales, and (3) the effect of using global and local criteria weighing on the final ranking of alternatives. We propose two approaches to aggregate ranks for the entire basin: using non-dominated alternatives only and using a normalized TOPSIS relative closeness value. The results show no variation in the final non-dominated alternative for both aggregation | multi-criteria decision analysis, spatial compensation, criteria aggregation, river basin management plan, technique for order of preference by similarity to ideal solution (TOPSIS) | ||
2019 | Russell W. Perry, John M. Plumb, Edward C. Jones, Nicholas A. Som, Thomas B. Hardy, Nicholas J. Hetrick | Application of the Stream Salmonid Simulator (S3) to Klamath River Fall Chinook Salmon (Oncorhynchus tshawytscha), California—Parameterization and Calibration | Technical Report | Monitoring Programs, Salmon | Klamath Basin | 180102 | In this report, we describe application of the Stream Salmonid Simulator (S3) to Chinook salmon (Oncorhynchus tshawytscha) in the Klamath River between Keno Dam in southern Oregon and the ocean in northern California. S3 is a deterministic life-stage-structured population model that tracks daily growth, movement, and survival of juvenile salmon. It can track different source populations or species, such as major tributary populations that enter a river like the Klamath River. A key theme of the model is that river flow affects habitat availability and capacity, which in turn drives density-dependent population dynamics. To explicitly link population dynamics to habitat quality and quantity, the river environment is constructed as a one-dimensional series of linked habitat units, each of which has an associated daily time series of discharge, water temperature, and useable habitat area or carrying capacity. In turn, the physical characteristics of each habitat unit and the number of fish occupying each unit affect survival and growth within each habitat unit and movement of fish among habitat units. The physical template of the Klamath River was formed by classifying the river into 2,635 mesohabitat units composed of runs, riffles, and pools. This template enabled modeling of the unimpounded Klamath River between the Keno Dam (the uppermost of four dams) and Iron Gate Dam (the lowermost dam) to address dam-removal scenarios. However, in this report, our focus was on parameterizing and calibrating the model under existing conditions, which included 1,706 discrete habitat units over the 312-kilometer (km) section of river between Iron Gate Dam and the ocean. | Stream Salmonid Simulator (S3), Chinook Salmon, Oncorhynchus tshawytscha, | |
2019 | FlowWest | Upper Klamath Basin Watershed Action Plan (UKB WAP) Draft version intended for expert review | Technical Report | Habitat Restoration, Monitoring Programs | Upper Klamath | 180102 | As endemic fish, such as the endangered Shortnose and Lost River sucker, face critical population decreases that threaten the survival of the species, water quality and restoration actions must be undertaken. Additionally, the upcoming removal of the PacifiCorp Dams on the main-stem Klamath River downstream of Upper Klamath Lake, creates an unprecedented opportunity to improve fish habitat conditions in the Upper Klamath Basin (UKB) for anadromous species including Chinook salmon and Steelhead trout. Habitat restoration initiatives will carry huge potential in re-establishing healthy fish populations in the Basin. The Upper Klamath Basin Watershed Action Plan provides guidance for ecological restoration projects in the Upper Klamath Basin. The document is the result of a collaboration of landowners, ecology experts and government. This makes it harmonious with existing regional planning efforts and accessible to restoration partners, while also sensitive to the needs of landowners to sustain their operations and ways of life. The Upper Klamath Basin Watershed Action Plan (UKB WAP) has three focus points: | anadromous species, Upper Klamath Basin (UKB), Upper Klamath Basin Watershed Action Plan (UKB WAP) | |
2018 | Susan Charnley, Hannah Gosnell, Kendra L Wendel, Mary M Rowland, Michael J Wisdom | Cattle grazing and fish recovery on US federal lands: can social–ecological systems science help? | Technical Report | Land Management & Irrigation | United States | In the western US, grazing management on federal lands containing habitat for fish species listed under the US Endangered Species Act (ESA) has sparked social conflict and litigation for decades. To date, the problem has been addressed through a top-down environmental governance system, but rangeland managers and grazing permittees now believe there is a need for more innovative management strategies. This article explores how social–ecological systems (SES) science can address rangeland management challenges associated with the survival and recovery of ESA-listed fish species on federal lands where cattle grazing is a dominant type of land use. We focus on the Blue Mountains of eastern Oregon, where the Mountain Social Ecological Observatory Network’s Blue Mountains Working Group is collaborating with diverse stakeholders to develop and test a novel grazing system designed to reduce the impact of cattle on riparian areas using an SES science approach. Although not a complete solution, SES science holds promise for improving rangeland management. | grazing management, habitat, fish species, US Endangered Species Act (ESA), | ||
2016 | Mitzi Wickman, Charles Wickman, Will Harling | Alexander Pond Monitoring Report | Technical Report | Monitoring Programs | Mid Klamath | The Alexander Pond is located approximately 2.8 miles up Seiad Creek from its confluence with the Klamath River. This was the first off-channel feature constructed by the Mid Klamath Watershed Council (MKWC) and was completed in October, 2010. Funding for this project came from US Fish and Wildlife Service Partners Program and the National Fish and Wildlife Foundation (NFWF)/PacifiCorp Coho Enhancement Fund. The landowner, Thomas Alexander, supports this project and has signed a landowner agreement permitting pond construction and follow-up monitoring and maintenance for 10 years, with the potential to renew the landowner agreement before it lapses. MKWC began project planning for the Alexander Pond in 2009. Field reviews with the Karuk Tribal Fisheries Program, landowner Tom Alexander, Rocco Fiori (Fiori GeoSciences, Inc.), US Fish and Wildlife Service (USFWS), NOAA Restoration Center, California Department of Fish and Wildlife (CDFW, US Forest Service and others helped to inform data collection needs prior to construction. MKWC performed a topographic survey, installed cross sections throughout the proposed outlet channel and the pond, dug three water quality monitoring wells within the perimeter of the off channel feature in the summer of 2009, and took monthly dissolved oxygen (DO) and temperature readings from these wells. Based on our analysis, we found that the feature would likely have good DO levels, a range of suitable water temperatures for rearing coho salmon, and adequate volumes of water. Prior to construction, all necessary permits were secured, including a Section 1602 Streambed Alteration Agreement from CDFW, Clean Water Act Section 401 certification from the State Water Resources Control Board, National Environmental Policy Act documentation from USFWS, and Clean Water Act Section 404 dredge and fill permits from the Army Corps. | Monitoring, Alexander Pond | ||
2018 | Mid Klamath Watershed Council | May Pond Monitoring Report | Technical Report | Monitoring Programs | Mid Klamath | 180102 | May Pond, is an off-channel pond located in the lower half mile of Seiad Creek, approximately 1,700 feet upstream of its confluence with the Klamath River. The Mid Klamath Watershed Council (MKWC) began planning for the construction of May Pond in 2010 and completed construction in July 2013. Funding for this project was provided by US Fish and Wildlife Service and the National Fish and Wildlife Foundation, Coho Enhancement Fund (PacifiCorp). | Mid Klamath Watershed Council (MKWC), Monitoring, May Pond | |
2018 | Scott River Watershed Council | Restoring Priority Coho Habitat in the Scott River Watershed Modeling and Planning Report Phase 1 – October 1, 2018 | Technical Report | Habitat Restoration, Salmon | Scott River | 180102 | This report summarizes the key findings from a conceptual analysis that was used to identify and prioritize high value restoration sites and stream reaches where coho rearing habitat can be enhanced within key cold water reaches of the Scott River system. There is a critical need to increase the quantity, quality and availability of complex, deep, slow water habitats for summer and over-winter rearing coho salmon within the Scott River system. It is important that a full understanding of the totality of the current condition of the Scott River Watershed be taken into context when trying to assess desirable conditions. Much of the historic range of habitat used by coho salmon consisted of the low gradient reaches of the Scott River and its tributaries. The loss of floodplain connectivity at varying flow regimes has critically reduced the available habitat to support juvenile salmon. Restoration of these habitats is needed to increase coho smolt production and build ecosystem resiliency in advance of further impacts related to climate change, local droughts, and legacy and on-going land use practices. The underlying principle of this project is that of stewardship. A deeper understanding of the characteristics of the Scott River system will ensure that stewardship coupled with restoration actions will produce the most benefit for natural resources, human capital, and private and taxpayer funding. Many of the on-the ground projects resulting from this planning effort will likely be a win:win where habitat is restored and landowners also benefit from reduced destructive flooding and increased groundwater recharge. This report summarizes the anthropogenic impacts within the watershed and outlines a series of possible restoration options which restoration practitioners, landowners and agencies might consider when developing strategies on ways to address limiting factors for coho salmon within the Scott River Watershed. | Coho Salmon, Scott River Watershed, Modeling, Planning, Restoration | |
2011 | Aqua Terra Consulting | Shasta River Tailwater Reduction Plan | Technical Report | Contaminants, Land Management & Irrigation, Water Quality | Shasta River | 180102 | The Shasta River watershed, is located 22 miles south of the California/Oregon border. Shasta River is located in the Klamath River Basin and is considered an important tributary to the Klamath River. The extent of this project within the Shasta River Watershed, includes the irrigated acreage along the mainstem of the Shasta River from the mouth to Dwinnell Reservoir, as well as irrigated acreage along Parks Creek, Big Springs Creek, Little Shasta River, Oregon Slough, and Willow Creek. Tailwater and Tailwater Neighborhoods Tailwater can be defined as run-off from agricultural irrigation practices, usually related | Tailwater, Shasta, run-off, agricultural irrigation practices, | |
2019 | ESSA Technologies Ltd. | Klamath IFRMP Phase 3 Kick-Off Webinar presentation | Presentation | Adaptive Management, Habitat Restoration, Monitoring Programs | Klamath Basin | Klamath Basin Integrated Fisheries Restoration and Monitoring Plan - Phase 3 Kick-off Webinar Clint Alexander, Natascia Tamburello, Marc Porter, Cedar Morton, Darcy Pickard | |||
2010 | P Roni, G Pess, T Beechie, S Morley | Estimating Changes in Coho Salmon and Steelhead Abundance from Watershed Restoration: How Much Restoration Is Needed to Measurably Increase Smolt Production? | Technical Report | Habitat Restoration, Salmon | United States | Using existing data from evaluations of habitat restoration, we estimated the average change in coho salmon Oncorhynchus kisutch and steelhead O. mykiss parr and smolt densities for common in-channel | Coho Salmon, Steelhead, Abundance, Watershed Restoration, Smolt Production | ||
2018 | Damon H. Goodman, Stewart B. Reid | Regional Implementation Plan for Measures to Conserve Pacific Lamprey (Entosphenus tridentatus), California – Sacramento Regional Management Unit | Technical Report | Other threatened fishes | United States | Pacific Lamprey, Entosphenus tridentatus, were historically widely distributed from Mexico north along the Pacific Rim to Japan. They are culturally important to indigenous people throughout their range, and play a vital role in the ecosystem: cycling marine nutrients, passing primary production up the food chain as filter feeding larvae, promoting bioturbation in sediments, and serving as food for many mammals, fishes and birds. Recent observations of substantial declines in the abundance and range of Pacific Lamprey have spurred conservation interest in the species, with increasing attention from tribes, agencies, and others. In 2003 the U.S. Fish and Wildlife Service (USFWS) was petitioned by 11 conservation groups to list four species of lamprey in Oregon, Washington, Idaho, and California, including the Pacific Lamprey, under the Endangered Species Act (ESA) (Nawa et al. 2003). The USFWS review of the petition indicated a likely decline in abundance and distribution in some portions of the Pacific Lamprey's range and the existence of both long-term and proximate threats to this species, but the petition did not provide information describing how the portion of the species’ petitioned range (California, Oregon, Idaho, and Washington) or any smaller portion is appropriate for listing under the ESA. The USFWS was therefore unable to define a listable entity based on the petition and determined Pacific Lamprey to be ineligible for listing (USFWS 2004). It is the USFWS's strategy to improve the status of lampreys by proactively engaging in a concerted conservation effort. This collaborative effort, guided by the development and implementation of the Pacific Lamprey Conservation Initiative (PLCI) initiated in 2004, will facilitate opportunities to address threats, restore habitat, increase our knowledge of Pacific Lamprey, and improve their distribution and abundance in the United States portion of their range. | Pacific Lamprey, Conservation Measures, NatureServe, Limiting Factors | ||
2018 | Anne Voss, Kimberly True, J. Scott Foott | Myxosporean Parasite (Ceratonova shasta and Parvicapsula minibicornis) Prevalence of Infection in Klamath River Basin Juvenile Chinook Salmon, March – August 2018 | Technical Report | Contaminants, Salmon, Water Quality | Klamath Basin | 180102 | Juvenile Klamath River Chinook salmon (Oncorhynchus tshawytscha) were assayed from late March to August 2018 by quantitative polymerase chain reaction (QPCR) and histology for myxosporean parasite infection of Ceratonova shasta and Parvicapsula minibicornis. During the first 8 weeks of the season, juvenile Chinook salmon were assayed in real-time for C. shasta. Fish were collected early in the week and processed for necropsy, DNA extraction, and QPCR, in order to provide timely data to fishery managers regarding flow management. Ceratonova shasta prevalence of infection (POI) exceeded the emergency dilution flow criteria of 20% in the Shasta to Scott (K4) reach on April 30th, the 6th week of the monitoring program. | Myxosporean Parasite (Ceratonova shasta and Parvicapsula minibicornis), Juvenile Chinook Salmon, | |
2018 | Stephen A. Gough, Christian Z. Romberger, Nicholas A. Som | Fall Chinook Salmon Run Characteristics and Escapement in the Mainstem Klamath River below Iron Gate Dam, 2017 | Technical Report | Dam Operations, Salmon | Klamath Basin | Adult fall Chinook Salmon Oncorhynchus tshawytscha carcasses and redds were surveyed on the mainstem Klamath River, from Iron Gate Dam to Wingate Bar during the 2017 spawning season to estimate annual escapement and characterize the age and sex composition and spawning success of the run. Surveys were conducted over 9 weeks, from October 11 to December 6. Using postmortem mark–recapture methods and a hierarchical latent variables model between Iron Gate Dam and the confluence with the Shasta River, the estimated spawning escapement for this 21.6-km section of the mainstem Klamath River was 4,740 fish. Based on this estimate and age composition data from scale samples, spawning escapement by year class was 1,749 (36.9%) age-2 (jacks and jills), 2,376 (50.1%) age-3, 550 (11.6%) age-4, and 65 (1.4%) age-5 spawners. The presence of jills (age-2 females) was unusually high in 2017 and they accounted for 8.2% of all female carcasses. Jacks (age-2 males) accounted for 53.4% of all male carcasses. An estimated 19.8% | Carcass, Chinook, Egg Production, Escapement, Hierarchical Latent Variables Model, Klamath, Mark–Recapture, Pre-Spawn Mortality, Redd, Salmon, Spawner, Spawning | ||
2018 | Nicholas A. Som, Justin Alvarez, Aaron Martin | Assessment of Chinook Salmon Smolt Habitat Use in the lower Trinity River | Technical Report | Salmon | Trinity River | 180102 | This report summarizes data collections and analyses to assess variation in physical habitat characteristics selected by Chinook Salmon smolts in the Trinity River. Spatially, this study focuses on two mainstem Trinity River reaches located downstream of the confluence of the North Fork Trinity River, each several kilometers in length. This project was initiated to inform the extension of the Trinity River Stream Salmonid Simulator (S3) model from the confluence of the North Fork Trinity River to the confluence with the Klamath River. Several methods for observing and enumerating juvenile Chinook Salmon were explored, with the goal to compliment habitat models developed for Chinook Salmon fry and parr in the upper portion of the Trinity River mainstem. Methods applying various sonar camera technologies were deemed ineffective for the intended needs of the project. To complete the project, direct-observation snorkel counts we chosen as the data collection method. Time spent conducting field sampling methodology trials and elevated flows causing turbid waters too dark for effective sampling caused delays in implementation of the data collection. Eventually, assessments of habitat use were collected at the desired sites, but during a single week in August. The single week of sampling is generally thought to be too short to capture temporal variation in habitat use. Additionally, the August period of collection is rather late in the period of time when juvenile Chinook Salmon inhabit the Trinity River, and too few wild fish may have been present to accurately reflect the habitat selection of larger juveniles. | Chinook Salmon, Smolt Habitat, Trinity | |
2018 | Aaron T. David, Stephen A. Gough, William D. Pinnix | Summary Of Catch And Biological Data Collected During Juvenile Salmonid Monitoring On The Mainstem Klamath River Below Iron Gate Dam, California, 2017 | Technical Report | Dam Operations, Monitoring Programs, Salmon | Klamath Basin | 180102 | This report summarizes results from the 2017 season of juvenile salmonid outmigrant monitoring on the mainstem Klamath River below Iron Gate Dam. Trapping occurred at three locations: below the confluence with Bogus Creek (river km 308), near where Interstate 5 crosses the Klamath River (river km 294), and near the Kinsman Creek confluence upstream of the confluence with the Scott River (river km 238). High and variable river flows throughout much of the trapping season prevented the continual operation of traps, contributed to flawed sets at all three trap sites that precluded estimates of abundance, and likely contributed to the overall low catches observed relative to other years. Both frame nets and rotary screw traps were used to sample juvenile salmonids and other fishes. Traps were deployed in late February (Bogus trap site), early March (I-5 trap site), and early June (Kinsman trap site) and were operated until late May (Bogus and I-5 trap sites), or late June (Kinsman trap site). Juvenile salmonids were enumerated daily when traps were operating and subsamples of salmonids were measured for length, weight, and external symptoms of disease. Non-salmonid fishes were also enumerated and subsampled for length measurements. Natural-origin age-0 Chinook Salmon were captured at each of the three trap sites in all weeks that sampling occurred and displayed few external symptoms of disease. Natural-origin juvenile Coho Salmon and steelhead were also observed in relatively low numbers at all three sites during the trapping season. | Juvenile Salmonid, Iron Gate Dam, Monitoring | |
2018 | Christian Z. Romberger, Sylvia Gwozdz | Performance of water temperature management on the Klamath and Trinity Rivers, 2017 | Technical Report | Water Temperature | Trinity River, Klamath Basin | 180102 | Water temperature is an important factor in riverine environments, influencing the physiology and life history expression for salmonids and other aquatic organisms. Understanding the thermal regime of a river is a crucial component of successful environmental flow management, especially on rivers with dams and other anthropogenic influences. The U.S. Fish and Wildlife Service began monitoring water temperature in the Klamath basin in 2001 due to growing interest and concern over the effects of elevated water temperatures, particularly on Pacific salmon. This report summarizes the results of 2017 water temperature monitoring for a set of focal locations within the anadromous portion of the Klamath Basin from April 1 to October 31. Temperature criteria for the Trinity River have been recommended by the Trinity River Restoration Program (TRRP) and are based upon the Trinity River Flow Evaluation Study and the Trinity River Mainstem Fishery Restoration: Final Environmental Impact Statement/Environmental Impact Report. On the Klamath River the U.S. Environmental Protection Agency’s (EPA) Pacific Northwest salmonid life history stage temperature criteria are used, as they are the best science-based and peer-reviewed criteria available. In 2017, designated an ‘Extremely Wet’ water year, the Trinity River exceeded temperature criteria for 27 days at the monitoring location above the confluence with the Klamath. The Klamath River exceeded temperature criteria at all sites (range of 24 to 140 days), but only exceeded the long-term mean daily water temperatures at two sites, at Klamath River below Iron Gate Dam and at Klamath River above the mouth. Mean daily water temperatures were < 13.0°C before April 1 at all focal sites and were < 13.0°C after October 31 for 3 of 4 Trinity River focal sites and for 3 of 5 Klamath River focal sites. Most locations saw a decrease in days exceeding temperature criteria from 2016, as well as their respective long-term averages. | Water temperature, Klamath, Trinity, Trinity River Restoration Program (TRRP) | |
2019 | David A Hewitt, Ph.D. | David A Hewitt, Ph.D. – research and monitoring program for two endangered catostomids in the Upper Klamath Basin of Oregon and California. | Website | Monitoring Programs, Suckers | Upper Klamath | 180102 | David A Hewitt, primarily helps to guide a research and monitoring program for two endangered catostomids in the Upper Klamath Basin of Oregon and California. We use quantitative tools such as capture-recapture to investigate the ecology of the species and factors inhibiting their recovery. Technology for detection of passive integrated transponders (PIT tags) plays a central role. Biography M.S. 2003. Fisheries and Wildlife Sciences (Minor in Statistics), North Carolina State University, Department of Zoology, North Carolina Cooperative Fish and Wildlife Research Unit, Raleigh, NC [Advisor: Dr. Joe Hightower] B.S. 2000. Fisheries Science, Virginia Tech, Department of Fisheries and Wildlife Sciences, College of Natural Resources, Blacksburg, VA | Aquatic Ecosystems, Endangered Species, Fishery Resources, Freshwater Ecosystems, Migration, Suckers, Clear lake, Upper Klamath lake, PIT tags | |
2019 | U.S. Fish and Wildlife Service | Biological Opinion on the Effects of Proposed Klamath Project Operations from April 1, 2019, through March 31, 2024, on the Lost River Sucker and the Shortnose Sucker | Technical Report | Dam Operations, Habitat Restoration, Monitoring Programs, Suckers | Klamath Basin | 180102 | This document transmits the biological opinion (BiOp) of the U.S. Fish and Wildlife Service (USFWS, Service) based on our review of the proposed operations of the Klamath Project (Project) by the Bureau of Reclamation (Reclamation) in Klamath County in Oregon and Siskiyou and Modoc Counties in California. The federally-listed species (hereafter referred to as listed species) and critical habitats considered in this document are Lost River sucker (Deltistes luxatus, LRS) and shortnose sucker (Chasmistes brevirostris; SNS), which were both listed as endangered in 1988 and have designated critical habitat. There are also listed species that fall under the jurisdiction of the National Marine Fisheries Service (NMFS) that are present in the action area. The effects of the Project on these species was considered in a separate, but coordinated, BiOp prepared by NMFS. This document was prepared in accordance with section 7 of the Endangered Species Act of 1973, as amended (ESA; 16 U.S.C. § 1531 et seq.). Reclamation’s request for formal consultation was received by the USFWS on December 21, 2018. Reclamation provided an addendum to their December 21 Biological Assessment on February 15, 2019. This BiOp and the concurrence determinations are based on information provided in Reclamation’s Final Biological Assessment (BA; USBR 2018a), including the addenda and clarifications received on February 15, 2019 and March 22, 2019, and other sources of information. A complete record of this consultation is on file at the USFWS office in Klamath Falls, Oregon. | Lost River sucker (Deltistes luxatus, LRS), Shortnose sucker (Chasmistes brevirostris; SNS) | |
2019 | Roni | Does River Restoration Increase Fish Abundance and Survival or Concentrate Fish? The Effects of Project Scale, Location, and Fish Life History | Academic Article | Dam Removal, Habitat Restoration | United States | Despite billions of dollars spent on various river restoration techniques, we still find ourselves debating whether habitat restoration increases fish abundance or concentrates fish. Based on the available literature, I discuss three important questions related specifically to the restoration of salmonid habitat: (1) “Does river restoration increase fish abundance or concentrate fish?”; (2) “Does river restoration increase fish survival or increase abundance?”; and (3) “Does the size or amount of river restoration influence fish response?” First, there is scant evidence to support the contention that river restoration leads to the | Restoration, Fish abundance, survival, fish life history | ||
2019 | J. Ryan Bellmore, George R. Pess, Jeffrey J. Duda, Jim E. O'Connor, Amy E. East, Melissa M. Foley, Andrew C. Wilcox, Jon J. Major, Patrick B. Shafroth, Sarah A. Morley, Christopher S. Magirl, Chauncey W. Anderson, James E. Evans, Christian E. Torgersen, Laura S. Craig | Conceptualizing Ecological Responses to Dam Removal: If You Remove It, What’s to Come? | Academic Article | Dam Removal, Habitat Restoration | United States | One of the desired outcomes of dam decommissioning and removal is the recovery of aquatic and riparian ecosystems. To investigate this common objective, we synthesized information from empirical studies and ecological theory into conceptual models that depict key physical and biological links driving ecological responses to removing dams. We define models for three distinct spatial domains: upstream of the former | dam removal, river restoration, disturbance, conceptual models, ecological modeling | ||
2019 | U.S. Department of the Interior Bureau of Reclamation | 2018 Biological Assessment – The Effects of the Proposed Action to Operate the Klamath Project from April 1, 2019 through March 31, 2029 on Federally-Listed Threatened and Endangered Species | Technical Report | Dam Removal, Salmon, Suckers | Klamath Basin | This Biological Assessment (BA) has been prepared pursuant to section 7(a)(2) of the Endangered Species Act (ESA) of 1973, as amended, (16 United States Code [U.S.C.] § 1531 et seq.), to evaluate the potential effects of the continued operation of the Bureau of Reclamation’s (Reclamation) Klamath Project (Project) on species listed as threatened or endangered under the ESA. The Project is located in south-central Oregon and northeastern California and contains approximately 230,000 acres of irrigable land. Reclamation stores, diverts, and conveys waters of the Klamath and Lost Rivers to meet authorized Project purposes and contractual obligations in compliance with state and federal laws and carries out the activities necessary to maintain the Project and ensure its proper long-term functioning and operation. Federally-listed species that occur within the Action Area and are considered as part of this consultation are the endangered Lost River sucker (Deltistes luxatus), endangered shortnose sucker (Chasmistes brevirostris), threatened Southern Oregon/Northern California Coast (SONCC) coho salmon (Oncorhynchus kisutch), threatened Southern Distinct Population Segment (DPS) of the North American green sturgeon (Acipenser medirostris), endangered Southern Resident DPS killer whale (Orcinus orca), and threatened DPS of Pacific eulachon (Thaleichthys pacificus). | ESA, Threatened, Endangered species, Biological Assessment, BA | ||
2018 | USDA | Six Rivers Aquatic Restoration Project Draft Environmental Assessment | Technical Report | Habitat Restoration | Klamath Basin | The USDA Forest Service, Six Rivers National Forest (SRNF or forest) has prepared the Six Rivers Aquatic Restoration Project (Aquatic Restoration Project) Draft Environmental Assessment (draft EA), to disclose the environmental analysis of a proposal to accelerate recovery of north coast salmon populations (federally listed threatened coho salmon, steelhead and Chinook salmon), other Forest Service aquatic species and water quality. This assessment was guided by the California Office of Planning and Research 2014 guidance NEPA and CEQA: Integrating Federal and State Environmental Reviews which encourages federal, state and local agencies to coordinate the NEPA and CEQA process so that one environmental document is prepared that meets the requirements for both CEQA and NEPA. The draft EA discloses a range of alternatives and predicted effects of No Action (Alternative 1) compared to the modified Proposed Action (Alternative 2), in compliance with the National Environmental Policy Act (NEPA; 42 USC 4321 et seq.) and the California Environmental Quality Act (CEQA; California Public Resources Code (CPRC) §21000 et seq.). | Environmental Assessment, Six Rivers, Restoration | ||
2016 | U.S. Fish and Wildlife Service | Arcata Fish and Wildlife Office Fish and Aquatic Habitat Program Overview 2016. Role of AFWO Fish & Aquatic Habitat Conservation Program. | Technical Memo | Habitat Restoration, Salmon | Lower Klamath | 180102 | Role of AFWO Fish & Aquatic Habitat Conservation Program | AFWO Fish & Aquatic Habitat Conservation Program, Fish and Aquatic Habitat Program | |
2016 | U.S. Fish and Wildlife Service | Arcata Fish and Wildlife Office Fisheries Program’s Drought Response 2016 Providing Technical Support to Water Managers – Klamath Basin Anadromous Fish and Aquatic Habitat Monitoring and Assessments | Technical Memo | Aquatic Habitat / Invertebrates / Insects, Salmon | Klamath Basin | 180102 | Klamath Basin Anadromous Fish and Aquatic Habitat Monitoring and Assessments In FY16, the Service’s Arcata Fish and Wildlife Office Fisheries Program, working in collaboration with tribal and agency partners, contributed over 2.4 million dollars in support of monitoring studies, applied research, and to provide technical support needed to better inform management and guide restoration of anadromous fish populations and associated aquatic habitats Northern California. The primary focus of the Program’s activities was within the Klamath Basin and included efforts to support the Trinity River Restoration Program. | Aquatic Habitat, Monitoring, Assessment | |
2015 | Nicholas A. Som, Damon H. Goodman, Russell W. Perry, Thomas B. Hardy | Habitat Suitability Criteria via Parametric Distributions: Estimation, Model Selection and Uncertainty | Academic Article | Aquatic Habitat / Invertebrates / Insects, Habitat Restoration | United States | Previous methods for constructing univariate habitat suitability criteria (HSC) curves have ranged from professional judgement to kernel-smoothed density functions or combinations thereof. We present a new method of generating HSC curves that applies probability density functions as the mathematical representation of the curves. Compared with previous approaches, benefits of our method include (1) estimation of probability density function parameters directly from raw data, (2) quantitative methods for selecting among several candidate probability density functions, and (3) concise methods for expressing estimation uncertainty in the HSC curves. We demonstrate our method with a thorough example using data collected on the depth of water used by juvenile Chinook salmon (Oncorhynchus tschawytscha) in the Klamath River of northern California and southern Oregon. All R code needed to implement our example is provided in the appendix. Published 2015. This article is a U.S. Government work and is in the public domain in the USA. | habitat suitability criteria, maximum likelihood, probability density function, bootstrap | ||
2017 | Nicholas A. Som, Russell W. Perry, Edward C. Jones, Kyle De Juilio, Paul Petros, William D. Pinnix, Derek L. Rupert | N-mix for fish: estimating riverine salmonid habitat selection via N-mixture models | Academic Article | Aquatic Habitat / Invertebrates / Insects, Salmon | United States | Models that formulate mathematical linkages between fish use and habitat characteristics are applied for many purposes. For riverine fish, these linkages are often cast as resource selection functions with variables including depth and velocity of water and distance to nearest cover. Ecologists are now recognizing the role that detection plays in observing organisms, and failure to account for imperfect detection can lead to spurious inference. Herein, we present a flexible N-mixture model to associate habitat characteristics with the abundance of riverine salmonids that simultaneously estimates detection probability. Our formulation has the added benefits of accounting for demographics variation and can generate probabilistic statements regarding intensity of habitat use. In addition to the conceptual benefits, model application to data from the Trinity River, California, yields interesting results. Detection was estimated to vary among surveyors, but there was little spatial or temporal variation. Additionally, a weaker effect of water depth on resource selection is estimated than that reported by previous studies not accounting for detection probability. N-mixture models show great promise for applications to riverine resource selection. | salmonid habitat, N-mix, N-mixture models | ||
2018 | D. H. Goodman, N. A. Som, N. J. Hetrick | Increasing the availability and spatial variation of spawning habitats through ascending baseflows | Academic Article | Habitat Restoration, In-Stream Flow / Flow Regime, Salmon | United States | Precipitation in fall and winter is important to recharge aquifers in Northern California and the Pacific Northwestern United States, causing the baseflow in rivers ascend during the time when Chinook salmon (Oncorhynchus tshawytscha) construct redds. Herein, we evaluate the availability of spawning habitats under a constant streamflow common in regulated rivers against ascending baseflows patterned from free‐flowing rivers. A binomial logistic regression model was applied to predict the suitability of redd locations based on physical characteristics. Next, two‐dimensional hydrodynamic habitat models were developed at two locations representing a broad range of channel forms common in large rivers. Hydrodynamic and habitat models were leveraged together to simulate the quality, amount, and spatial distribution of spawning habitat at a series of individual flow rates, as well as the combined effect of those flow rates | habitat modelling, natural flow regime, salmon, spawning | ||
2018 | Russell W. Perry, John M. Plumb, Edward C. Jones, Nicholas A. Som, Nicholas J. Hetrick, Thomas B. Hardy | Model Structure of the Stream Salmonid Simulator (S3)— A Dynamic Model for Simulating Growth, Movement, and Survival of Juvenile Salmonids | Technical Report | Salmon | United States | Fisheries and water managers often use population models to aid in understanding the effect of alternative water management or restoration actions on anadromous fish populations. We developed the Stream Salmonid Simulator (S3) to help resource managers evaluate the effect of management alternatives on juvenile salmonid populations. S3 is a deterministic stage-structured population model that tracks daily growth, movement, and survival of juvenile salmon. A key theme of the model is that river flow affects habitat availability and capacity, which in turn drives density dependent population dynamics. To explicitly link population dynamics to habitat quality and quantity, the river environment is constructed as a one-dimensional series of linked habitat units, each of which has an associated daily time series of discharge, water temperature, and usable habitat area or carrying capacity. The physical characteristics of each habitat unit and the number of fish occupying each unit, in turn, drive survival and growth within each habitat unit and movement of fish among habitat units. The purpose of this report is to outline the underlying general structure of the S3 model that is common among different applications of the model. We have developed applications of the S3 model for juvenile fall Chinook salmon (Oncorhynchus tshawytscha) in the lower Klamath River. Thus, this report is a companion to current application of the S3 model to the Trinity River (in review). The general S3 model structure provides a biological and physical framework for the salmonid freshwater life cycle. This framework captures important demographics of juvenile salmonids aimed at translating management alternatives into simulated population responses. Although the S3 model is built on this common framework, the model has been constructed to allow much flexibility in application of the model to specific river systems. | Stream Salmonid Simulator (S3), Model, Growth, Movement, Survival, Juvenile Salmonids | ||
2018 | Susan A. Wherry, Tamara M. Wood | A Metabolism-Based Whole Lake Eutrophication Model to Estimate the Magnitude and Time Scales of the Effects of Restoration in Upper Klamath Lake, South-Central Oregon | Technical Report | Habitat Restoration, Upper Klamath, Water Quality | Upper Klamath | 180102 | A whole lake eutrophication (WLE) model approach for phosphorus and cyanobacterial biomass in Upper Klamath Lake, south-central Oregon, is presented here. The model is a successor to a previous model developed to inform a Total Maximum Daily Load (TMDL) for phosphorus in the lake, but is based on net primary production (NPP), which can be calculated from dissolved oxygen, rather than scaling up a small-scale description of cyanobacterial growth and respiration rates. This phase 3 WLE model is a refinement of the proof-of-concept developed in phase 2, which was the first attempt to use NPP to simulate cyanobacteria in the TMDL model. The calibration of the calculated NPP WLE model was successful, with performance metrics indicating a good fit to calibration data, and the calculated NPP WLE model was able to simulate mid-season bloom decreases, a feature that previous models could not reproduce. In order to use the model to simulate future scenarios based on phosphorus load reduction, a multivariate regression model was created to simulate NPP as a function of the model state variables (phosphorus and chlorophyll a) and measured meteorological and temperature model inputs. The NPP time series was split into a low- and high-frequency component using wavelet analysis, and regression models were fit to the components separately, with moderate success. The regression models for NPP were incorporated in the WLE model, referred to as the “scenario” WLE (SWLE), and the fit statistics for phosphorus during the calibration period were mostly unchanged. The fit statistics for chlorophyll a, however, were degraded. These statistics are still an improvement over prior models, and indicate that the SWLE is appropriate for long-term predictions even though it misses some of the seasonal variations in chlorophyll a. | Eutrophication Model, Upper Klamath Lake, | |
2013 | Kurt Fesenmyer, Rene Henery, Jack Williams, Trout Unlimited Science Program | California Freshwater Conservation Success Index: An Assessment of Freshwater Resources in California, with focus on lands managed by the US Bureau of Land Management | Technical Report | Habitat Restoration, Water Quality | United States | We describe the methods, structure, and results of the California Freshwater Conservation Success Index (CSI), an assessment tool focused on aquatic species and habitats, the condition of those habitats, and threats those resources will likely face in the future. The CSI uses a common conservation planning approach of subwatershed-scale data summary and scoring, synthesizing and interpreting spatial data for 43 metrics consolidated into 22 indicators. The Aquatic Species Status group of indicators summarizes the findings of a new database of over 400,000 records for 1550 aquatic-dependent species, including all 48 BLM Special Status Species that use freshwater habitats. The Aquatic Habitats Status indicators provide multiple summaries of a multi-source aquatic feature and land cover dataset. A group of Habitat Integrity indicators includes assessment of watershed condition, temperature conditions, habitat connectivity, water quality, water quantity, and land stewardship factors. Future threats are anticipated within indicators related to land conversion, resource extraction, climate change, water quality risk, and introduced species. The combined results map the pattern of relative condition of aquatic species, habitats, condition, and threats across a broad landscape. We provide an example interpretation of how the results of the California Freshwater CSI can be used to identify conservation strategies and discuss important considerations for using the assessment. The results are available as a web map and as a GIS database, allowing users to develop custom queries and configurations of the results for identifying specific opportunities or for evaluating projects. | Conservation Success Index (CSI), Assessment tool | ||
2018 | Flora Cordoleani, Jeremy Notch, Alex S. McHuron, Arnold J. Ammann, Cyril J. Michel | Movement and Survival of Wild Chinook Salmon Smolts from Butte Creek During Their Out-Migration to the Ocean: Comparison of a Dry Year versus a Wet Year | Academic Article | Salmon | Klamath Basin, Upper Klamath | 180102 | California’s Central Valley (CCV) Chinook Salmon Oncorhynchus tshawytscha stocks have declined substantially since the mid-1800s, with most listed as threatened or endangered or heavily supplemented by hatcheries. As the largest population of CCV wild spring-run Chinook Salmon, Butte Creek fish are an important source for promoting life history diversity in the CCV Chinook Salmon community. However, little information exists on Butte Creek juvenile mortality during out-migration to the ocean, which is considered a critical phase in the overall population dynamics. We used the Juvenile Salmon Acoustic Telemetry System to track the movement of individual fish, and we used a mark–recapture modeling framework to estimate survival of migrating wild Chinook Salmon smolts from lower Butte Creek to ocean entry at the Golden Gate Bridge. Survival and migration varied significantly among years; in 2015, which was a dry year, Chinook Salmon smolts migrated more slowly throughout their migratory corridor and exhibited lower survival than in a wetter year (2016); among locations, fish migrated faster and experienced higher survival in the lower Sacramento River than in the Sutter Bypass and the Sacramento–San Joaquin River Delta. Our data suggest that higher flow at release and larger fish lengths both resulted in increased survival. Our findings shed light on a critical phase of wild spring-run juvenile Chinook Salmon dynamics and could help to inform future restoration and management projects that would improve the survival and abundance of the CCV spring-run Chinook Salmon populations. | Survival, Movement, Butte Creek, Wild Chinook Salmon Smolts, | |
2012 | A. Peter Klimley, R. Bruce MacFarlane, Phillip T. Sandstrom, Stephen T. Lindley | A summary of the use of electronic tagging to provide insights into salmon migration and survival | Academic Article | Salmon | United States | The status of Pacific salmon populations has been of increasing concern for many decades, with many populations now under legal protection. The causes of their declining status are manifold and untangling | electronic tagging, salmon migration and survival | ||
2006 | Scott Griebling, Janet Oatney, Stephen Cruise, Washington County Department of Land Use and Transportation | Dairy-McKay Fish Passage Assessment and Prioritization | Technical Report | Habitat Restoration | United States | During the summer of 2006, Washington County conducted a fish passage inventory of the culverts acting as road-stream crossings in the Dairy-McKay watershed. The inventory has established a foundation for future fish passage inventories in the County’s other watersheds. Field inspections were conducted on 302 culverts, 164 of which were surveyed and prioritized to identify structures that were barriers to migratory fish species. The remaining culverts were determined non-fish bearing structures. Twenty of the culverts surveyed were deemed high priority barriers and were organized in groupings based on geographic location, stream connectivity, and ease of construction. Objectives | Fish Passage Assessment, | ||
2012 | Lower Columbia Estuary Partnership | A Guide to the Lower Columbia River Ecosystem Restoration Program – TECHNICAL REVIEW DRAFT | Technical Report | Habitat Restoration | United States | The study area of the Lower Columbia River Ecosystem Restoration Program encompasses the study area of the Lower Columbia Estuary Partnership (Estuary Partnership) and includes all tidally influenced areas of the mainstem and tributaries from Bonneville Dam to the plume. The Columbia River historically supported diverse and abundant populations of fish and wildlife and is thought to have been one of the largest historical producers of Pacific salmonids in the world. Additionally, the lower Columbia River is one of the most important areas in the Pacific Flyway providing migrating, overwintering and/or breeding habitats for shorebirds, waterfowl and neotropical bird species. Anthropogenic changes since the 1860s have significantly reduced the quantity and quality of habitat available to fish and wildlife species. Contributing factors include altered timing, magnitude, duration, frequency, and rate of change in river flows; degraded water quality and increased toxic, chemical contaminants; introduction of invasive exotic species and In 1995 the Estuary Partnership was established by the governors of Washington and Oregon and the US Environmental Protection Agency (USEPA) when USEPA designated the lower Columbia River ‘an estuary of national significance.’ The National Estuary Program (NEP) was established by the US Congress in 1987 amendments to the Clean Water Act to create collaborative, locally driven programs to conserve and restore the nation’s estuaries. The Estuary Partnership is one of the 28 NEPs, and each NEP facilitates and coordinates a collaborative network of partners to implement the actions and meet the goals within its Comprehensive Conservation and Management Plan (Management Plan). | Restoration, Lower Columbia River | ||
2010 | Matthew Barry, Sue Mattenberger, Larry Dunsmoor, Shannon Peterson, Danette Watson | Projected Restoration Actions and Associated Costs Under the Klamath Basin Restoration Agreement for the Upper Klamath River Basin Above Keno, Oregon | Formal Agreement | Habitat Restoration, Upper Klamath | Upper Klamath | 180102 | We outlined projected restoration activities for the Upper Klamath River Basin (above Keno), focusing on the geographic scope identified in the Klamath Basin Restoration Agreement (KBRA). Elements of the KBRA budget (Appendix C-2) covered here include row numbers 3, 4, 5, 6, 8, 9, 11, 12, and 90. These activities are intended to improve conditions affecting fish production, survival, and recovery in and above Keno Reservoir and Upper Klamath Lake, with an emphasis on valley-floor rivers and streams. Consequently, areas targeted for these activities are predominately privately-owned, but some publicly managed lands are included. In addition to providing direct benefits to the Upper Klamath Basin, the significant improvements to water quality and nutrient/organic loads expected to result from these actions will benefit the Klamath River for many miles downstream of Keno. | Restoration Agreement, Restoration Actions, | |
2011 | E. Eric Knudsen, | An Independent Peer Review of Two Models Estimating Potential Chinook Salmon Production After Dam Removal and Habitat Restoration on the Klamath River | Technical Report | Dam Removal, Habitat Restoration, Mainstem Klamath River, Salmon | Klamath Basin | 180102 | This is an independent expert review of two separate and different approaches for estimating the Chinook salmon production potential of the Klamath River Basin before and after proposed removal of four mainstem dams and implementation of the Klamath Basin Restoration Agreement (KRBA). The information provided in the two modeling endeavors, as well as this and other peer reviews, will be used in a determination to be made by the Secretary of the Interior, in consultation with the Secretary of Commerce, The two reports were reviewed with respect to the stated Terms of Reference. Comments were made on both specific detailed concerns, as well as broader, overarching issues that might influence the appropriateness of respective approaches. Taken together, the reports by Hendrix (2011) and Lindley and Davis (2011) represent significant work contributing to the estimation of the numbers of fish that could | Independent expert review, Klamath Basin Restoration Agreement (KRBA), Dam removal, Chinook salmon, | |
2018 | KRRC, Klamath River Renewal Corporation | Definite Plan for the Lower Klamath Project | Technical Report, Website | Dam Operations, Dam Removal, Hatcheries, Lower Klamath, Water Quality | Lower Klamath | 180102 | The Definite Plan for the Lower Klamath Project prepared by the Klamath River Renewal Corporation (KRRC) implements the Klamath Hydroelectric Settlement Agreement (2010, as amended 2016) (KHSA). The KHSA resolved disputes among numerous parties regarding the relicensing of the Klamath Hydroelectric Project (FERC No. 2082) (KHP). The parties include: U.S. Departments of Interior and Commerce; States of California and Oregon; Humboldt County, California; Yurok and Karuk Tribes; Upper Klamath Water Users Association; conservation and fishing groups; and PacifiCorp, as the licensee for the KHP. In the KHSA, the parties agreed to a process whereby PacifiCorp and a dam removal entity, now KRRC, would apply to the Federal Energy Regulatory Commission (FERC) to split the KHP into two projects, the KHP and the Lower Klamath Project, and proceed with the actions necessary to achieve dam removal, a free-flowing condition on the Klamath River, and volitional fish passage. The KHP was constructed between 1911 and 1962 and includes eight developments: East Side, West Side, Keno (non-generating), J.C. Boyle, Copco No. 1, Copco No. 2, Fall Creek, and Iron Gate. PacifiCorp operated the KHP under a 50-year license issued by FERC, until the license expired in 2006. PacifiCorp continues to operate the developments under an annual license. In September 2016, PacifiCorp and KRRC submitted an application to FERC to amend the existing license for the KHP, establish an original license for the Lower Klamath Project consisting of four developments (J.C. Boyle, Copco No. 1, Copco No. 2, and Iron Gate), and transfer the original license for the Lower Klamath Project to the KRRC. At that time, the KRRC also applied to surrender the license for the Lower Klamath Project, including removal of the four developments. Now that the applications have been filed, KRRC is moving forward with the Definite Plan in accordance with Section 7.2 of the KHSA. | Definite Plan, Dam Operations, Dam Removal, Water Quality, | |
1996 | Michael L. Jones, Robert G. Randall, Daniel Hayes, Warren Dunlop, Jack Imhof, Gilles Lacroix, Neville J.R. Ward | Assessing the ecological effects of habitat change: moving beyond productive capacity | Academic Article | Habitat Restoration | Productive capacity can be defined as the “ecological effect” end of a habitat change ® ecological effect | habitat change, ecological effect, | |||
1997 | Dill, William A., creator, Cordone, Almo J., California, Dept. of Fish and Game | History And Status of Introduced Fishes In California, 1871 – 1996 | Technical Report, Website | Other threatened fishes | United States | Unlike previous histories on the subject (the last being in 1976), this one is fully documented by primary references to the original publication or other sources. There are also explanations as to why some of the previous errors occurred. The detailed history of each introduction, including the primary references, is given. The subsequent history and status of each species in California is given. The attitude of administrators, ichthyologists, fish culturists, fishery biologists, fishermen, and the public toward each introduction is given, and there is a discussion of their value. There is, with respect to California, a review of the present regulations concerning introduced fishes, and a prognostication of the future concerning them. Approximately 111 full species of freshwater and euryhaline fishes occur in California. (Salton Sea fishes are excluded.) of these, 53 have been introduced from without the state and have been established successfully. Another five subspecies or races have become established. Twelve introduced fishes have uncertain status. Thirty-nine, including one marine fish which was deliberately introduced, have achieved no lasting success. Eight introduced fishes are listed as "hypothetical." Five were scheduled for introduction, but the introductions were never completed. Three species have been listed erroneously in scientific papers as having been introduced. About 26 other species have been formally suggested as introductions. Three species are likely candidates for introduction. | Introduced Fishes, California | ||
2018 | ESSA Technologies Ltd. | Klamath Basin Integrated Fisheries Restoration and Monitoring Plan (IFRMP)Phase 2- Real-time Survey Webinar | Presentation | Adaptive Management, Dam Removal, Monitoring Programs | Klamath Basin | 180102 | Klamath Basin Integrated Fisheries Restoration and Monitoring Plan (IFRMP)Phase 2 - Real-time Survey Webinar presentation. | ||
2018 | ESSA Technologies Ltd. | Klamath Basin Integrated Fisheries Restoration and Monitoring Plan (IFRMP) Phase 2 (Task 1.2) In Progress Chapters & Annotated Report Outline August 24, 2018 | Technical Report | Adaptive Management, Dam Removal, Estuary of the Klamath, Habitat Restoration, Lower Klamath, Mainstem Klamath River, Monitoring Programs, Upper Klamath | Klamath Basin | 180102 | Klamath Basin Integrated Fisheries Restoration and Monitoring Plan (IFRMP) Phase 2 (Task 1.2). In Progress Chapters & Annotated Report OutlineAugust 24, 2018. | Klamath Basin Integrated Fisheries Restoration and Monitoring Plan (IFRMP) Phase 2 (Task 1.2) | |
2018 | NOAA | Recovery Plan for the Southern Distinct Population Segment of North American Green Sturgeon (Acipenser medirostris) | Technical Report | Other threatened fishes | United States | The southern distinct population segment (sDPS) of North American green sturgeon (Acipenser medirostris) is an anadromous, long-lived, late maturing species that spawns in the Sacramento River Basin, located in the Central Valley of California. It spends most of its life in the nearshore marine environment and coastal bays and estuaries along the west coast of North America. On April 7, 2006, NMFS listed sDPS green sturgeon as a threatened species under the Endangered Species Act (ESA) (71 FR 17757, April 7, 2006). This determination was based on the fact that the Sacramento River basin contains the only known sDPS spawning population, information suggesting population decline, and habitat loss and degradation in the Sacramento River Basin. Since the listing of the sDPS, a number of habitat restoration actions within the Sacramento River Basin have occurred and spawning has been documented in the Feather and Yuba rivers (Seesholtz et al. 2015; Beccio 2018), but many significant threats have not been addressed. Currently, the majority of sDPS green sturgeon spawning occurs within a single reach of the mainstem Sacramento River, placing the species at increased risk of extinction due to stochastic events. Recovery Goal, Objective, and Criteria | North American Green Sturgeon, Recovery Plan | ||
2018 | ESSA Technologies Ltd. | July 10-11 2018 IFRMP Workshop Summary | Technical Report | Adaptive Management, Aquatic Habitat / Invertebrates / Insects, Dam Removal, Estuary of the Klamath, Habitat Restoration, Hydrology, In-Stream Flow / Flow Regime, Monitoring Programs, Other threatened fishes, Redband Trout, Salmon, Sediment & Geomorphology, Steelhead/Rainbow Trout, Suckers, Water Quality | Klamath Basin | July 10-11 2018 IFRMP Workshop Summary | |||
2018 | ESSA Technologies Ltd. | Objectives, Performance Indicators & Monitoring Workshop Pre-Workshop Briefing Package | Technical Report | Adaptive Management, Dam Removal, Estuary of the Klamath, Habitat Restoration, Hydrology, Monitoring Programs | Klamath Basin | Klamath Basin Integrated Fisheries Restoration and Monitoring Plan (IFRMP) Task 1.2 Objectives, Performance Indicators & Monitoring Workshop Pre-Workshop Briefing Package. | Briefing package, Objectives, Performance Indicators, Monitoring, Workshop | ||
2018 | ESSA Technologies Ltd. | Development of an Integrated Fisheries Restoration & Monitoring Plan for the Klamath Basin: Objectives Hierarchy, Key Performance Indicators & Monitoring Framework Workshop – July 2018 | Formal Agreement, Presentation | Adaptive Management, Dam Removal, Habitat Restoration, In-Stream Flow / Flow Regime, Monitoring Programs | Klamath Basin | 180102 | Development of an Integrated Fisheries Restoration & Monitoring Plan for the Klamath Basin: Objectives Hierarchy, Key Performance Indicators & Monitoring Framework Workshop. Presentation Workshop summary. Objectives of the workshop: 1. Review draft goals & objectives hierarchy and assign candidate key performance indicators to each objective. 2. Working at a basin-wide scale, review major monitoring needs and uncover gaps in our ability to: a) detect cumulative benefits of portfolios of restoration actions, and b) where required, reduce critical uncertainties related to the effectiveness of different classes of restoration actions. 3. Review preliminary ideas for methods to help prioritize restoration actions and monitoring activities. | Workshop, Objectives Hierarchy, Key Performance Indicators, Monitoring Framework | |
2018 | Mark Bransom, John Carlos Garza, John B. Hamilton, Mark Hereford, Alex Gonyaw | Overview of Klamath River Dam Removal and Salmon Reintroduction to the Upper Klamath Basin. A Concurrent Session at the 36th Annual Salmonid Restoration Conference held in Fortuna, California from April 11 – 14, 2018. | Conference Proceeding | Dam Removal, Habitat Restoration, Salmon, Upper Klamath | Upper Klamath | 180102 | Overview of Klamath River Dam Removal and Salmon Reintroduction to the Upper Klamath Basin. The decommissioning and removal of four dams on the Klamath River is on track to occur in 2020. As with recent dam removals, there are a range of expectations and a range of understanding of the process of removing the dams, monitoring the resources, and minimizing direct and indirect impacts on the natural resources and ecological processes in the watershed. This session will provide an update on the implementation of the dam removal and review the schedule of activities as well as plans for monitoring physical and biological aspects of the river. The purpose of this session is to provide a very up-to-date and concise overview of the process being implemented and the proposed schedule of activities. The Video Recording of the this Session is Located at: https://vimeo.com/album/5137447 | Dam Removal, Salmon Reintroduction, | |
2015 | U.S. Fish and Wildlife Service | Klamath Recovery Unit Implementation Plan for Bull Trout (Salvelinus confluentus) | Technical Report | Other threatened fishes | Klamath Basin | 180102 | This recovery unit implementation plan (RUIP) describes the threats to bull trout (Salvelinus confluentus) and the site-specific management actions necessary for recovery of the species within the Klamath Recovery Unit, including estimates of time required and cost. This document supports and complements the Recovery Plan for the Coterminous U.S. Population of Bull Trout (USFWS 2015a), which describes recovery criteria and a general range-wide recovery strategy for the species. Detailed discussion of species status and recovery actions within each of the six recovery units is provided in six RUIPs that have been developed in coordination with State, Federal, Tribal, and other conservation partners. This document incorporates our responses to public comment on the Draft Klamath RUIP (USFWS 2015b) received during the comment period from June 4 to July 20, 2015 (Appendix I). | bull trout (Salvelinus confluentus), implementation plan, Klamath Recovery Unit | |
2018 | Mark Hereford, Ted Wise | An Update on the Reintroduction Implementation Plan of Anadromous Fishes into the Upper Klamath Basin – Mark Hereford | Conference Proceeding | Salmon, Upper Klamath | Upper Klamath | 180102 | An Update on the Reintroduction Implementation Plan of Anadromous Fishes into the Oregon Portion | Salmon, Upper Klamath Basin, | |
2018 | Anna V Smith | How the Yurok Tribe is reclaiming the Klamath River | News Article | Habitat Restoration, Water Allocation & Rights | Klamath Basin | 180102 | On a warm September Saturday in 2002, Amy Cordalis stood in a Yurok Tribal Fisheries Department boat on the Klamath River, in response to reports from fishermen that something was amiss on the river. On this stretch of the Yurok Reservation, the river was wide and deep, having wound its way from its headwaters at the Upper Klamath Lake, through arid south-central Oregon to the California coast. Cordalis, then 22, was a summer fish technician intern, whose job was to record the tribe’s daily catch. A college student in Oregon, she’d found a way to spend time with her family and be on the river she’d grown up with — its forested banks and family fishing hole drawing her back year after year. But that morning, something was wrong. Cordalis watched as adult salmon, one after the other, jumped out of the water, mouths gaping, before plunging back into the river. Her father, Bill Bowers, who was gillnetting farther downriver, looked up to see a raft of salmon corpses floating around the bend. The carcasses piled up on the banks and floated in eddies, as seagulls swept inland to pick at the remains. | Klamath River, Yurok Tribe, Amy Cordalis | |
1996 | McEwan, | Steelhead Restoration and Management Plan for California | Technical Report | Steelhead/Rainbow Trout | United States | Steelhead are an important and valued resource to California's citizens and are an important component of the vast biodiversity of the State. Like many of California's anadromous fish resources, steelhead are declining. Decline of steelhead populations is but one aspect of the present statewide decline in biodiversity, caused by California's burgeoning human population and the ever-increasing demand on natural resources. | Steelhead, Restoration, Management Plan | ||
2018 | Daniel J. Isaak, Charles H. Luce, Dona L. Horan, Gwynne L. Chandler, Sherry P. Wollrab, David E. Nage | Global Warming of Salmon and Trout Rivers in the Northwestern U.S.: Road to Ruin or Path Through Purgatory? | Academic Article | Climate Change Effects | United States | Large rivers constitute small portions of drainage networks but provide important migratory habitats and fisheries for salmon and trout when and where temperatures are sufficiently cold. Management and conservation of coldwater fishes in the current era of rapid climate change require knowing how riverine thermal environments are evolving and the potential for detrimental biological impacts. Robust estimates of warming rates, however, are lacking due to limited long-term temperature monitoring, so we compiled the best available multidecadal records and estimated trends at 391 sites in the 56,500-km river network of the northwestern USA. Warming trends were prevalent during summer and early fall months in recent 20- and 40-year periods (0.18–0.35°C per decade during 1996–2015 and 0.14–0.27°C per decade during 1976–2015), paralleled air temperature trends, and were mediated by discharge trends at regional and local levels. To illustrate the biological consequences of warming later in this century, trend estimates were used | Global Warming, Salmon River, Trout River, | ||
2015 | Lindsey Ogston, Sam Gidora, Matthew Foy, Jordan Rosenfeld | Watershed-scale effectiveness of floodplain habitat restoration for juvenile coho salmon in the Chilliwack River, British Columbia | Academic Article | Habitat Restoration | Although billions of dollars have been spent restoring degraded watersheds worldwide, watershed-scale studies evaluating their effectiveness are rare. To mitigate damage from past logging activities, the floodplain of the upper Chilliwack River watershed (600 km2) was extensively restored from 1996 to 2000 through off-channel habitat restoration. The contribution of restored habitat to watershed-scale production of wild coho (Oncorhynchus kisutch) smolts was estimated through an extensive mark recapture program in 2002. 27%–34% of the production of the estimated 247 200 out-migrating coho smolts could be attributed to the 157 000 m2 of newly created habitat. Area-based habitat models from the literature performed reasonably well in predicting smolt production from restored habitat, providing an acceptable first-order approach for evaluating production benefits of restoration. The costs of smolt production integrated over 30 years ranged from US$0.69–US$10.05 per smolt, falling within the range of hatchery production costs reported elsewhere (typical cost of US$1.00 per smolt) at the most cost-effective restoration sites. This study demonstrates that large-scale habitat restoration can effectively enhance fish production at a watershed scale, at a cost that may be comparable to hatchery smolt production. | coho (Oncorhynchus kisutch), habitat restoration, | |||
2014 | John Buffington, Chris Jordan, Mike Merigliano, Jim Peterson, Clair Stalnaker | Review of the Trinity River Restoration Program Following Phase 1, with Emphasis on the Program’s Channel Rehabilitation Strategy | Technical Report | Habitat Restoration | Trinity River | 180102 | Details of the Phase 1 channel rehabilitation activities are given in Appendices C and G and are summarized here. During Phase 1 (2005-2010), 15 rehabilitation projects were completed along the course of the restoration reach (Table 1, Figure 1). Projects were initially focused on removing riparian berms that had encroached on the river following dam closure, lowering floodplains to match the post-ROD flow regime, and creating point bars that would promote a dynamic river. The conceptual model for these activities was that if restraining features were removed, fluvial processes would take over, creating a more dynamic and complex river that, in turn, would offer more productive habitat for fish and wildlife (USFWS AND HVT 1999; USDOI 2000). It was also recognized that the river could not be restored to pre-dam conditions | Channel rehabilitation activities, Trinity River | |
2018 | Josh Boyce, Damon H. Goodman, Nicholas A. Som, Justin Alvarez, Aaron Martin | Trend Analysis of Salmon Rearing Habitat Restoration in the Trinity River at Summer Base Streamflow, 2005-2015 | Technical Report | Habitat Restoration, Salmon | Trinity River | 1801020 | A goal of the Trinity River Restoration Program is to enhance the production of naturally spawned salmonids by implementing a suite of restoration actions including streamflow management, gravel augmentation and mechanical channel rehabilitation. Short-term monitoring of select channel rehabilitation sites has documented a direct increase in rearing habitat as a result of channel construction activity; however, a companion study failed to detect substantial improvements between 2009 and 2013 at a 64-km restoration reach scale. Here, we analyzed longer term performance of channel rehabilitation sites and the effect of spatiotemporal changes to constructed and natural off channel features to inform the adaptive management process. We assessed the effect of construction, from 2005-2015, at 13 rehabilitation sites surveyed before and after construction. We also developed a sub-sampling protocol to assess trends in the amount of rearing habitat at a total of 22 rehabilitation sites. All data assessed in this report were collected at a Lewiston dam release of 12.7 cms and all analyses were applicable to that streamflow. Rearing habitat increased at 12 of 13 sites after construction. One site, Trinity House Gulch, experienced a 23% decrease in optimal presmolt habitat attributable to fluvial processes that occurred before the first post-construction survey. However, the trend analysis indicated that the level of initial benefit from construction was not sustained over longer time periods at many sites. Ten of 19 sites had less total habitat at the most recent survey than they did at the first survey after construction; 1 of those 10, Hocker Flat, had slightly more optimal habitat. The year of construction does not appear to affect the amount of habitat after construction (n=11 sites) or at the most recent survey (n=19 sites). However, six of seven sites had more habitat at the most recent survey than they did at pre-construction. | Habitat Surveys, Sampling Design, Salmon, Trinity River, TRRP, | |
2017 | Bureau of Reclamation | 2017 Annual Operations Plan. Klamath Project, Oregon-California Mid-Pacific Region | Technical Report | Water Allocation & Rights | 180102 | The Klamath Project (Project) delivers water for irrigation purposes to over 200,000 acres in southern Oregon and northern California. This 2017 Operations Plan (Plan) describes Project operations that are anticipated to occur during the 2017 spring-summer irrigation season (March 1 to November 15), based upon current and projected hydrologic conditions. The Plan is consistent with Reclamation’s proposed action analyzed in the biological opinions (BiOp) issued jointly by National Oceanic and Atmospheric Administration’s National Marine Fisheries Service (NMFS) and the U.S. Fish and Wildlife Service (USFWS) on May 31, 2013. This Plan is divided into three sections. The first section describes the estimated water supplies available for Project purposes during the 2017 spring-summer irrigation season. The second section discusses the voluntary water conservation measures that Reclamation and Project water users will employ to manage and conserve limited water resources. The third section address additional operational considerations. | Operations Plan, Water supply, Conservation, Drought mitigation | ||
2015 | Bureau of Reclamation | 2015 Annual Operations Plan. Klamath Project, Oregon-California Mid-Pacific Region | Technical Report | Water Allocation & Rights | Klamath Basin | 1801020 | The Klamath Project (Project) delivers water for irrigation purposes to over 200,000 acres in Southern Oregon and Northern California. This 2015 Operations Plan (Plan) describes Project operations that are anticipated to occur during the 2015 spring-summer irrigation season (March 1 to November 15, 2015), based upon current and projected hydrologic conditions. The Plan is consistent with the Reclamation’s proposed action analyzed in the biological opinions issued jointly by National Oceanic and Atmospheric Administration’s National Marine Fisheries Service (NMFS) and the U.S. Fish and Wildlife Service (USFWS) (collectively the Services) on May 31, 2013 Biological Opinion (BiOp). During formal consultation with Services under section 7 of the Endangered Species Act, Reclamation proposed various actions, as further described in the Operation Plan, to mitigate impacts to federally listed species as a result of operation of the Klamath Project. Reclamation must operate as provided in the BiOp in order to remain in compliance with the Endangered Species Act. This Plan is divided into two sections. The first section describes the estimated water supplies available for Project purposes during the 2015 spring-summer irrigation season. The second section discusses the voluntary drought mitigation measures that the Bureau of Reclamation and Project water users will employ to minimize and manage potential Project water supply shortages. | Operations Plan, Water supply, drought mitigation | |
2018 | Paul Moran, Joe Dazey, Larrie LaVoy, Sewall Young | Genetic Mixture Analysis Supports Recalibration of the Fishery Regulation Assessment Model | Academic Article | Salmon | United States | Management of the commercially important Washington coastal Chinook Salmon Oncorhynchus tshawytscha troll fishery depends on the Chinook Salmon Fishery Regulation Assessment Model (FRAM). The Chinook Salmon FRAM uses historical and contemporary coded wire tag recoveries to estimate abundance and exploitation rates for particular indicator stocks. Those estimates are used to set limits on overall harvest and protect sensitive stocks. Current efforts are underway to implement a newer “base period” (time period on which exploitation rates are based). Our collaboration of science, management, and industry used genetic mixture modeling to provide independent stock composition estimates supporting FRAM recalibration. Genetic modeling suggested that total catch includes a much smaller proportion of a limiting Columbia River stock, a larger fraction of Canadian stocks, and an abundant Oregon coastal stock not previously included in the FRAM. Our results focus attention on particular stocks that will benefit from refinements in the Chinook Salmon FRAM. | Chinook Salmon, Oncorhynchus tshawytscha, Fishery Regulation Assessment Model | ||
2018 | Jonathan D. Bakker, Eric G. Delvin, Peter W. Dunwiddie | Staged-scale restoration: Refining adaptive management to improve restoration effectiveness | Academic Article | Adaptive Management, Habitat Restoration | United States | 1. Adaptive management (AM) was proposed as a rigourous and structured approach to natural resource management that increases learning and reduces uncertainty. It has been adopted as a guiding principle by agencies world-wide, yet its usefulness for guiding management continues to be debated. We propose a new strategy, which we term staged-scale restoration (SSR), to implement AM in a restoration setting while enhancing the scientific rigour, ecological effectiveness and overall efficiency of restoration efforts compared to traditional applications of AM. | adaptive management, adaptive restoration, collaboration, land management, randomization, replication, spatial scale, staged-scale restoration, staging | ||
2008 | Ward, L., P. Crain, B. Freymond, M. McHenry, D. Morrill, G. Pess, R. Peters, J.A. Shaffer, B. Winter,B. Wunderlich. | Elwha River Fish Restoration Plan Developed Pursuant to the Elwha River Ecosystem and Fisheries Restoration Act, Public Law 102-495 | Technical Memo | Habitat Restoration | United States | In 1992 the U.S. Congress enacted the Elwha River Ecosystem and Fisheries Restoration Act (Public Law 102-495). The Elwha Act provided funding for the federal acquisition of the Elwha and Glines Canyon dams and required a specific plan to achieve full restoration of the Elwha River ecosystem and fisheries. The U.S. Department of the Interior (DOI et al. 1994) subsequently published the Elwha Report, which found that only through removal of both dams could full restoration be achieved. The need to protect users of the river’s water from adverse impacts of dam removal was also recognized. The Lower Elwha Klallam Tribe (LEKT), Olympic National Park (ONP) of the National Park Service, the Washington Department of Fish | Restoration, Elwha, | ||
2008 | Michael L. McHenry, George R. Pess, | An Overview of Monitoring Options for Assessing the Response of Salmonids and Their Aquatic Ecosystems in the Elwha River Following Dam Removal | Technical Report | Dam Removal, Monitoring Programs | United States | Removal of two hydroelectric dams on the Elwha River, Washington, one of the largest river restoration projects in the United States, represents a unique opportunity to assess the recovery of fish populations and aquatic ecosystems at the watershed scale. The current project implementation does not contain sufficient funding to support comprehensive monitoring of restoration effectiveness. As a result, current monitoring efforts are piecemeal and uncoordinated, creating the possibility that project managers | Elwha River dam removal, Monitoring, | ||
2017 | Christine Weber, Ulrika Åberg, Anthonie D. Buijse, Francine M.R. Hughes, Brendan G. McKie, Hervé Piégay, Phil Roni, Stefan Vollenweider, Susanne Haertel-Borer | Goals and principles for programmatic river restoration monitoring and evaluation: collaborative learning across multiple projects | Academic Article | Habitat Restoration | River restoration is a relatively recent undertaking, with high levels of complexity and uncertainty involved. Many restoration projects have been monitored over the past three decades, however, results have rarely been compared across projects thereby limiting our ability to identify factors that influence restoration outcomes. Programmatic monitoring and evaluation (ProME) that builds on standardized surveys and systematic cross-project comparison allows for collaborative learning, transfer of results across restoration projects and for adaptive management and monitoring. We present a conceptual framework for ProME consisting of four goals and nine principles. First, ProME accounts for complexity, uncertainty, and change in order to contribute to sustainable river management over the long term. Second, ProME promotes collaborative learning and adaptation by standardizing the sampling design for the field surveys at multiple projects and by disseminating findings across stakeholders. Third, ProME verifies to what extent restoration has been achieved, i.e., it must quantify the size and direction of change. Fourth, ProME identifies why the observed effects were present, thereby improving our mechanistic understanding of river functioning. We conclude with potential extensions of the framework (e.g., evaluating cumulative effects of projects within a catchment). Our conceptual framework presents a structured approach toward a more systematic learning and evidence-based action in river restoration, while taking into account the wider picture of environmental change within which river restoration projects will inevitably operate. | River restoration, collaborative learning | |||
2016 | Ronald Thom, Tom St. Clair, Rebecca Burns, Michael Anderson | Adaptive management of large aquatic ecosystem recovery programs in the United States | Academic Article | Adaptive Management | United States | Adaptive management (AM) is being employed in a number of programs in the United States to guide | Aquatic ecosystem restoration, Ecosystem services, Endangered and threatened species | ||
2018 | Blaine D. Ebberts, Ben D. Zelinsky, Jason P. Karnezis, Cynthia A. Studebaker, Siena Lopez-Johnston, Anne M. Creason, Lynne Krasnow, Gary E. Johnson, Ronald M. Thom | Estuary ecosystem restoration: implementing and institutionalizing adaptive management | Academic Article | Adaptive Management, Habitat Restoration, Monitoring Programs | United States | We implemented and institutionalized an adaptive management (AM) process for the Columbia Estuary Ecosystem Restoration Program, which is a large-scale restoration program focused on improving ecosystem conditions in the 234-km lower Columbia River and estuary. For our purpose, “institutionalized”means the AMprocess and restoration programs are embedded in the work flow of the implementing agencies and affected parties. While plans outlining frameworks, processes, or | collaboration, habitat restoration, learning, monitoring | ||
2010 | Heida L. Diefenderfer, Ronald M. om, Gary E. Johnson, John R. Skalski, Kristiina A. Vogt, Blaine D. Ebberts, G. Curtis Roegner, Earl M. Dawley | Assessing cumulative ecosystem response to coastal and riverine restoration programs | Academic Article | Habitat Restoration | United States | Large-scale ecological restoration programs are beginning to supplement isolated projects implemented on rivers and tidal waterways. Nevertheless, the effects of estuary and river restoration often continue to be evaluated at local project scales or by integration in an additive manner. Today, we have sufficient scientific understanding to apply knowledge gained from measuring cumulative impacts of anthropogenic stressors on ecosystems to assessment of ecological restoration. Integration of this knowledge has potential to increase the efficacy of restoration projects that are conducted at several locations but comanaged within the confines of a larger integrative program. We introduce a framework based on a levels-of-evidence approach that facilitates assessment of the cumulative landscape effects of individual restoration actions taken at many different locations. It incorporates data collection at restoration and reference sites, hydrodynamic modeling, geographic information systems, and meta-analyses in a five-stage process: design, data development, analysis, synthesis and evaluation, and application. This framework evolved from the need to evaluate the efficacy of restoration projects that are being implemented in numerous wetlands on the 235 km tidal portion of the Columbia River, USA, which are intended to increase rearing habitat for out-migrating juvenile salmonid fishes. | Columbia River, cumulative effects, estuary restoration, levels of evidence, salmon recovery | ||
2016 | H. L., G. E. Johnson, R. M. Thom, K. E. Buenau, L. A. Weitkamp, C. M. Woodley, A. B. Borde, R. K. Kropp. | Evidence-based evaluation of the cumulative effects of ecosystem restoration | Academic Article | Habitat Restoration | United States | This study adapts and applies the evidence-based approach for causal inference, a medical standard, to the restoration and sustainable management of large-scale aquatic ecosystems. Despite long-term investments in restoring aquatic ecosystems, it has proven difficult to adequately synthesize and evaluate program outcomes, and no standard method has been adopted. Complex linkages between restorative actions and ecosystem responses at a landscape scale make evaluations problematic and most programs focus on monitoring and analysis. Herein, we demonstrate a new transdisciplinary approach integrating techniques from evidence-based medicine, critical thinking, and cumulative effects assessment. Tiered hypotheses about the effects of landscape-scale restorative actions are identified using an ecosystem conceptual model. The systematic literature review, a health sciences standard since the 1960s, becomes just one of seven lines of evidence assessed collectively, using critical thinking strategies, causal criteria, and cumulative effects categories. As a demonstration, we analyzed data from 166 locations on the Columbia | causal criteria, critical thinking, cumulative effects, evidence-based medicine, fisheries, floodplain food web, habitat connectivity, hydropower mitigation, large-scale ecosystem restoration, salmon recovery, sustainability science, systematic review, tidal wetlands | ||
2016 | Jennifer S. O’Neal, Phil Roni, Bruce Crawford, Anna Ritchie & Alice Shelly | Comparing Stream Restoration Project Effectiveness Using a Programmatic Evaluation of Salmonid Habitat and Fish Response | Academic Article | Habitat Restoration, Salmon | United States | Hundreds of millions of dollars have been spent on stream restoration projects to benefit salmonids and other aquatic species across the Pacific Northwest, though only a small percentage of these projects are monitored to evaluate effectiveness and far fewer are tracked for more than 1 or 2 years. The Washington State Salmon Recovery Board and the Oregon Watershed Enhancement Board have spent more than US$500 million on salmonid habitat restoration projects since 1999. We used a multiple before-after–control-impact design to programmatically evaluate the reach-scale physical and biological effectiveness of a subset of restoration actions. A total of 65 projects in six project categories (fish passage, instream habitat, riparian planting, livestock exclusion, floodplain enhancement, and habitat protection) were monitored over an 8-year period. We conducted habitat, fish, and macroinvertebrate surveys to calculate the following indicators: longitudinal pool cross section and depth, riparian shade and cover, large woody debris volumes, fish density, macroinvertebrate indices, and upland vegetation condition class. Results indicate that four categories (instream habitat, livestock exclusions, floodplain enhancements, and riparian plantings) have shown significant improvements in physical habitat after 5 years. Abundance of juvenile Coho Salmon Oncorhynchus kisutch increased significantly at fish passage projects and floodplain enhancement projects, but significant results were not detected for other fish species. Moreover, the | Stream Restoration, Effectiveness, Salmonid Habitat, Fish Response | ||
2015 | Lyubov A. Kurkalova | Coset-Effective Placement of Best Management Practices in a Watershed: Lessons Learned from Conservation Effects Assessment Project | Academic Article | Adaptive Management | United States | This article reviews the key, cross-cutting findings concerning watershed-scale cost-effective placement | BMPs, watershed management, water quality economics, optimization, cost-effective BMP placement, costs of BMPs, evolutionary algorithms | ||
2015 | Barnas, K. A., S. L. Katz, D. E. Hamm, M. C. Diaz, and C. E. Jordan | Is habitat restoration targeting relevant ecological needs for endangered species? Using Pacific Salmon as a case study | Academic Article | Habitat Restoration, Salmon | United States | Conservation and recovery plans for endangered species around the world, including the US | conservation plan, decentralized management, ecoinformatics, ecological concern, endangered species, habitat assessment, habitat restoration, limiting factor, Pacific salmon, recovery plan, text mining | ||
2014 | Pollock, Michael M ; Beechie, Timothy J ; Wheaton, Joseph M ; Jordan, Chris E ; Bouwes, Nick ; Weber, Nicholas ; Volk, Carol | Using Beaver Dams to Restore Incised Stream Ecosystems | Academic Article | Dams & Reservoirs, Habitat Restoration | Biogenic features such as beaver dams, large wood, and live vegetation are essential to the maintenance of complex stream ecosystems, but these features are largely absent from models of how streams change over time. Many streams have incised because of changing climate or land-use practices. Because incised streams provide limited benefits to biota, they are a common focus of restoration efforts. Contemporary models of long-term change in streams are focused primarily on physical characteristics, and most restoration efforts are also focused on manipulating physical rather than ecological processes. We present an alternative view, that stream restoration is an ecosystem process, and suggest that the recovery of incised streams is largely dependent on the interaction of biogenic structures with physical fluvial processes. In particular, we propose that live vegetation and beaver dams or beaver dam analogues can substantially accelerate the recovery of incised streams and can help create and maintain complex fluvial ecosystems. | ecosystem restoration, stream restoration, conservation, beaver, Castor canadensis | |||
2011 | G. Mathias Kondolf | Setting Goals in River Restoration: When and Where Can the River “Heal Itself”? | Academic Article | Adaptive Management, Habitat Restoration | Ecological research demonstrates that the most diverse, ecologically valuable river habitats are those associated with dynamically migrating, flooding river channels. Thus, allowing the river channel to “heal itself” through setting aside a channel migration zone, or erodible corridor, is the most sustainable strategy for ecological restoration. The width and extent of channel can be set from historical channel migration and model predictions of future migration. However, the approach is not universally applicable because not all rivers have sufficient stream power and sediment load to reestablish channel complexity on a time scale of decades to years, and many are restricted by levees and infrastructure on floodplains that preclude allowing the river a wide corridor. A bivariate plot of stream power/sediment load (y axis) and degree of encroachment (urban, agricultural, etc.) (x axis) is proposed as a framework for evaluating the suitability of various restoration approaches. Erodible corridors are most appropriate where both the potential for channel dynamics and available space are high. In highly modified, urban channels, runoff patterns are altered, and bottomlands are usually encroached by development, making a wide corridor infeasible. There, restoration projects can still feature deliberately installed components such as riparian trees and trails with the social benefits of public education and providing recreation to underserved families. Intermediate approaches include partial restoration of flow and sediment load below dams and “anticipatory management”: sites of bank erosion are anticipated, and infrastructure is set back in advance of floods, to prevent “emergency” dumping of concrete rubble down eroding banks during high water. | erodible corridor, anticipatory management, River Restoration, | |||
2014 | B. Cluer, C. Thorne | A Stream Evolution Model Integrating Habitat and Ecosystem Benefits | Academic Article | Climate Change Effects, Habitat Restoration | For decades, Channel Evolution Models have provided useful templates for understanding morphological responses to disturbance associated with lowering base level, channelization or alterations to the flow and/or sediment regimes. In this paper, two well-established Channel Evolution Models are revisited and updated in light of recent research and practical experience. The proposed Stream Evolution Model The hydrologic, hydraulic, morphological and vegetative attributes of the stream during each evolutionary stage provide varying ranges and qualities of habitat and ecosystem benefits. The authors’ personal experience was combined with information gleaned from recent literature to construct a fluvial habitat scoring scheme that distinguishes the relative, and substantial differences in, ecological values of different evolutionary stages. Consideration of the links between stream evolution and ecosystem services leads to improved understanding of the ecological status of contemporary, managed rivers compared with their historical, unmanaged counterparts. The potential utility of the Stream Evolution Model, with its interpretation of habitat and ecosystem benefits includes improved river management decision making with respect to future capital investment not only in aquatic, riparian and floodplain conservation and restoration but also in interventions intended to promote species recovery. | Stream Evolution Model (SEM); channel evolution; freshwater ecology; habitat; conservation; river management; restoration; climate resilience | |||
2010 | Beechie, Timothy J. ; Sear, David A. ; Olden, Julian D. ; Pess, George R. ; Buffington, John M. ; Moir, Hamish ; Roni, Philip ; Pollock, Michael M. | Process-based Principles for Restoring River Ecosystems | Academic Article | Habitat Restoration | United States | Process-based restoration aims to reestablish normative rates and magnitudes of physical, chemical, and biological processes that sustain river and floodplain ecosystems. Ecosystem conditions at any site are governed by hierarchical regional, watershed, and reach-scale processes controlling hydrologic and sediment regimes; floodplain and aquatic habitat dynamics; and riparian and aquatic biota. We outline and illustrate four process-based principles that ensure river restoration will be guided toward sustainable actions: (1) restoration actions should address the root causes of degradation, (2) actions must be consistent with the physical and biological potential of the site, (3) actions should be at a scale commensurate with environmental problems, and (4) actions should have clearly articulated expected outcomes for ecosystem dynamics. Applying these principles will help avoid common pitfalls in river restoration, such as creating habitat types that are outside of a site’s natural potential, attempting to build static habitats in dynamic environments, or constructing habitat features that are ultimately overwhelmed by unconsidered system drivers. | river restoration, ecosystem dynamics, ecosystem processes | ||
2008 | Robert C. Walter, Dorothy J. Merritts | Natural Streams and the Legacy of Water-Powered Mills | Academic Article | In-Stream Flow / Flow Regime | Gravel-bedded streams are thought to have a characteristic meandering form bordered by a selfformed, | Natural Streams, Water-Powered Mills, | |||
2005 | Palmer, M. A. ; Bernhardt, E. S. ; Allan, J. D. ; Lake, P. S. ; Alexander, G. ; Brooks, S. ; Carr, J. ; Clayton, S. ; Dahm, C. N. ; Follstad Shah, J. ; Galat, D. L. ; Loss, S. G. ; Goodwin, P. ; Hart, D. D. ; Hassett, B. ; Jenkinson, R. ; Kondolf, G. M. ; Lave, R. ; Meyer, J. L. ; O' Donnell, T. K. ; Pagano, L. ; Sudduth, E. | Standards for ecologically successful river restoration | Academic Article | Habitat Restoration, Monitoring Programs | United States | 1.Increasingly, river managers are turning from hard engineering solutions to ecologically based restoration activities in order to improve degraded waterways. River restoration projects aim to maintain or increase ecosystem goods and services while protecting downstream and coastal ecosystems. There is growing interest in applying river restoration techniques to solve environmental problems, yet little agreement exists on what constitutes a successful river restoration effort. | ecosystem rehabilitation, floodplain, monitoring, restoration assessment, stream | ||
1997 | Daniel T. Snyder, Jennifer L. Morace | Nitrogen and Phosphorus Loading from Drained Wetlands Adjacent to Upper Klamath and Agency Lakes, Oregon | Technical Report | Water Quality | Upper Klamath | 180102 | The results of this study could be useful in helping to prioritize which drained wetlands may provide the greatest benefits with regard to reducing nutrient loads to the lake if restoration or landuse modifications are instituted. Recent acquisition and planned restoration of drained wetland areas at the Wood River and Williamson River North properties may produce significant reduction in the quantity of nutrients released by the decomposition of peat soils of these areas. If the water table rises to pre-drainage levels, the peats soils may become inundated most of the year, resulting in the continued long-term storage of nutrients within the peat soils by reducing aerobic decomposition. The maximum benefit, in terms of decreasing potential nutrient loss due to peat decomposition, could be the reduction of total nitrogen and total phosphorus loss to about onehalf that of the 1994–95 annual loss estimated for all the drained wetlands sampled for this study. | Drained Wetlands, Nitrogen, Phosphorus | |
1996 | Tamara M. Wood, Gregory J. Fuhrer, Jennifer L. Morace | Relation Between Selected Water-Quality Variables and Lake Level in Upper Klamath and Agency Lakes, Oregon | Technical Report | Water Quality | Upper Klamath | 180102 | Upper Klamath Lake is a large (140 square-mile), shallow (mean depth about 8 ft) lake in south-central Oregon that the historical record indicates has been eutrophic since its discovery by non-Native Americans. In recent decades, however, the lake has had annual occurrences of near-monoculture blooms of the blue-green alga Aphanizomenon flos-aquae. In 1988 two sucker species endemic to the lake, the Lost River sucker (Deltistes luxatus) and the shortnose sucker (Chasmistes brevirostris), were listed as endangered by the U.S. Fish and Wildlife Service, and it has been proposed that the poor water quality conditions associated with extremely long and productive blooms are contributing to the decline of those species. | Water Quality | |
2016 | Daniel R. Wise, Jim E. O’Connor | Spatially Explicit Suspended-Sediment Load Model for Western Oregon | Technical Report | Sediment & Geomorphology, Water Quality | United States | 180102 | We calibrated the watershed model SPARROW (Spatially Referenced Regressions on Watershed attributes) to give estimates of suspended-sediment loads for western Oregon and parts of northwestern California. Estimates of suspended-sediment loads were derived from a nonlinear least squares regression that related explanatory variables representing landscape and transport conditions to measured suspended-sediment loads at 68 measurement stations. The model gives estimates of model coefficients and their uncertainty within a spatial framework defined by the National Hydrography Dataset Plus hydrologic network. The resulting model explained 64 percent of the variability in suspended-sediment yield and had a root mean squared error value of 0.737. The predictor variables selected for the final model were (1) generalized lithologic province, (2) mean annual precipitation, and (3) burned area (by recent wildfire). Other landscape characteristics also were considered, but they were not significant predictors of sediment transport, were strongly correlated with another predictor variable, or were not as significant as the predictors selected for the final model. Knowledge of the regionally important patterns and factors in suspended-sediment sources and transport could support broad-scale, water-quality management objectives and priorities. Because of biases and limitations of this model, however, these results are most applicable for general comparisons and for broad areas such as large watersheds. For example, despite having similar area, precipitation, and land-use, the Umpqua River Basin generates 68 percent more suspended sediment than the Rogue River Basin, chiefly because of the large area of Coast Range sedimentary province in the Umpqua River Basin. | Suspended-Sediment Load, Water quality | |
2009 | Annett B. Sullivan, Dean M. Snyder, Stewart A. Rounds | Controls on biochemical oxygen demand in the upper Klamath River, Oregon | Academic Article | Water Quality | Upper Klamath | 180102 | A series of 30-day biochemical oxygen demand (BOD) experiments were conducted on water column | Biochemical oxygen demand, Klamath River, Organic matter, Dissolved oxygen | |
2011 | Annett B. Sullivan and Stewart A. Rounds, U.S. Geological Survey; Michael L. Deas, Watercourse Engineering, Inc.; Jessica R. Asbill, Bureau of Reclamation; Roy E. Wellman, Marc A. Stewart, and Matthew W. Johnston, U.S. Geological Survey; and I. Ertugrul Sogutlugil, | Modeling Hydrodynamics, Water Temperature, and Water Quality in the Klamath River Upstream of Keno Dam, Oregon, 2006–09 | Technical Report | Water Quality, Water Temperature | Upper Klamath | 1801020 | A hydrodynamic, water temperature, and water-quality model was constructed for a 20-mile reach of the Klamath River downstream of Upper Klamath Lake, from Link River to Keno Dam, for calendar years 2006–09. The two-dimensional, laterally averaged model CE-QUAL-W2 was used to simulate water velocity, ice cover, water temperature, specific conductance, dissolved and suspended solids, dissolved oxygen, total nitrogen, ammonia, nitrate, total phosphorus, orthophosphate, dissolved and particulate organic matter, and three algal groups. The Link–Keno model successfully simulated the most important spatial and temporal patterns in the measured data for this 4-year time period. The model calibration process provided critical insights into water-quality processes and the nature of those inputs and processes that drive water quality in this reach. The model was used not only to reproduce and better understand water-quality conditions that occurred in 2006–09, but also to test several load-reduction scenarios that have implications for future water-resources management in the river basin. The model construction and calibration process provided results concerning water quality and transport in the Link–Keno reach of the Klamath River, ranging from interesting circulation patterns in the Lake Ewauna area to the nature and importance of organic matter and algae. | hydrodynamic, water temperature, water-quality | |
2009 | Nancy S. Simon, Dennis Lynch, Thomas N. Gallaher | Phosphorus Fractionation in Sediment Cores Collected In 2005 Before and After Onset of an Aphanizomenon flos-aquae Bloom in Upper Klamath Lake, OR, USA | Academic Article | Contaminants, Sediment & Geomorphology | Upper Klamath | 1801020 | We tested the hypothesis that there would be measurable losses of phosphorus (P) from surficial sediments of Upper Klamath Lake (UKL), Oregon, if sediments were a source of P during an algal bloom. | Phosphorus fractionation, Residual phosphorus, Cyanophyte, Eutrophic, Shallow lake, Metals | |
2016 | Liam N. Schenk, Chauncey W. Anderson, Paul Diaz, Marc A. Stewart | Evaluating External Nutrient and Suspended-Sediment Loads to Upper Klamath Lake, Oregon, Using Surrogate Regressions with Real-Time Turbidity and Acoustic Backscatter Data | Technical Report | Contaminants, Sediment & Geomorphology, Water Quality | Upper Klamath | 180102 | Suspended-sediment and total phosphorus loads were computed for two sites in the Upper Klamath Basin on the Wood and Williamson Rivers, the two main tributaries to Upper Klamath Lake. High temporal resolution turbidity and acoustic backscatter data were used to develop surrogate regression models to compute instantaneous concentrations and loads on these rivers. Regression models for the Williamson River site showed strong correlations of turbidity with total phosphorus and suspended-sediment concentrations (adjusted coefficients of determination [Adj R2]=0.73 and 0.95, respectively). Regression models for the Wood River site had relatively poor, although statistically significant, relations of turbidity with total phosphorus, and turbidity and acoustic backscatter with suspended sediment concentration, with high prediction uncertainty. Total phosphorus loads for the partial 2014 water year (excluding October and November 2013) were 39 and 28 metric tons for the Williamson and Wood Rivers, respectively. These values are within the low range of phosphorus loads computed for these rivers from prior studies using water-quality data collected by the Klamath Tribes. The 2014 partial year total phosphorus loads on the Williamson and Wood Rivers are assumed to be biased low because of the absence of data from the first 2 months of water year 2014, and the drought conditions that were prevalent during that water year. Therefore, total phosphorus and suspended-sediment loads in this report should be considered as representative of a low-water year for the two study sites. Comparing loads from the Williamson and Wood River monitoring sites for November 2013–September 2014 shows that the Williamson and Sprague Rivers combined, as measured at the Williamson River site, contributed substantially more suspended sediment to Upper Klamath Lake than the Wood River, with 4,360 and 1,450 metric tons measured, respectively. | Turbidity, Suspended-Sediment Load, Nutrient | |
2009 | Stewart A. Rounds, Annett B. Sullivan, U.S. Geological Survey, | Review of Klamath River Total Maximum Daily Load Models from Link River Dam to Keno Dam, Oregon | Technical Report | Water Quality | Upper Klamath, Klamath Basin | 1801020 | To support the development of Total Maximum Daily Load (TMDL) programs for the Klamath River in south-central Oregon and northern California, flow and water-quality models were developed by Tetra Tech for the U.S. Environmental Protection Agency, the Oregon Department of Environmental Quality (ODEQ), and the California North Coast Regional Water Quality Control Board. The EFDC model was used to simulate conditions in the Klamath River estuary, the RMA-2 and RMA-11 models were used to simulate most riverine reaches, and the CE-QUAL-W2 model was used to simulate the reservoir reaches. The U.S. Geological Survey (USGS) was asked to review only the most upstream of these models of the Klamath River, from its source at Upper Klamath Lake (Link River Dam) through its first pooled reach ending at Keno Dam. The model developers have constructed streamflow and water-quality models to simulate a river reach that has highly complex water-quality processes that are not yet fully understood, and the models have great potential to help managers and regulators better understand the system. Certain errors identified in this review, however, need to be addressed before these models can be confidently used to predict temperature or water quality in the Link River Dam to Keno Dam reach of the Klamath River. | Water Quality, Total Maximum Daily Load (TMDL), | |
2003 | Mark R. Terwilliger, Douglas F Marklf | Associations between Water Quality and Daily Growth of Juvenile Shortnose and Lost River Suckers in Upper Klamath Lake, Oregon | Academic Article | Suckers, Water Quality, Water Temperature | Upper Klamath | 1801020 | Poor water quality from hypereutrophic Upper Klamath Lake in south central Oregon has been suspected of contributing to the recruitment failure of two endangered endemic fish species. The Lost River sucker (Deltistes luxatus)and the shortnose sucker (Chasmistes brevirostris). We used otolith daily increment widths as a proxy for juvenile somatic growth to construct two growth models: (I) a linear mixed-effects (LME) model examining the lifetime effects of lakewide averages of potentially stressful daytime water temperature, pH. and nighttime dissolved oxygen (DO). and (2) a simple linear regression model examining the effects of locally measured water temperature. pH. and daytime DO on growth or fish over 3 d before the fish 's capture. Graphical relationships between daily growth and biweekly un-ionized ammonia failed to show a sublethal effect on the growth of suckers captured in areas where un-ionized ammonia surpassed levels lethal to both species. For both species , our LME models indicated that at temperatures greater than approximately 22°C, low nighttime DO (less than 4 mg/L for Lost River suckers and less than 1 mg/L for shortnose suckers) caused enough stress to reduce growth. whereas at temperatures less than approximately 22 C, any stress from low nighttime DO was not reflected in reduced growth. We attribute the pattern to the species tolerance of low D O. the short duration of nighttime events, the fish's increased oxygen demand at higher temperatures, and growth compensation due to increased food resources associated with low DO. The combination of low DO and high temperature has also been implicated in adult fish kills in Upper Klamath Lake. Because 34% of the time lakewide August average temperatures exceeded 22°C, extended periods of warm temperatures and high primary production could affect the sizes or recruits surviving into fall. Both growth models suggested that shortnose might be more tolerant of poor water quality than Lost River suckers. | Water Quality, shortnose sucker (Chasmistes brevirostris), Lost River sucker (Deltistes luxatus) | |
2015 | J.D. Walker, J. Kann, W.W. Walker. | Spatial and temporal nutrient loading dynamics in the Sprague River Basin, Oregon. | Technical Report | Water Quality | Sprague - Sycan, Middle Sprague | 18010202 | This study evaluated the streamflow and nutrient dynamics of the Sprague River Basin over the period WY2002 – 2014 using biweekly flow and nutrient measurements collected by Klamath Tribes at eight sampling stations across the basin. Continuous daily time series of flows, loads, and concentrations were computed using methodologies similar to those used in a previous nutrient budget study of the entire Klamath Basin (Walker et al., 2012). These daily time-series were used as a basis to investigate the spatial and temporal dynamics of nutrient concentrations and loads, estimate relative amounts of background and anthropogenic loading, and evaluate long-term trends at each sampling station. | Water Quality, Sprague River Basin | |
2010 | D. Ciotti, S. M. Griffith, J. Kann, J. Baham | Nutrient and Sediment Transport on Flood-Irrigated Pasture in the Klamath Basin, Oregon | Academic Article | Water Quality | Klamath Basin | 180102 | Distinguishing between anthropogenic and natural sources of sediment and nutrients is important for water resource management in irrigated basins. Water quality of flood irrigation was monitored at the field scale in the upper Klamath Basin, Oregon, on two unfertilized cattle pastures that were 2 ha (Site 1) and 70 ha (Site 2) in area. Water samples were analyzed for concentrations of sediment, total dissolved nitrogen (TDN), total dissolved phosphorus (TDP), orthophosphate, ammonium-N (NHz 4 -N), and nitrate-N (NO{ | Water Quality, Flood irrigation, runoff, sediment | |
1999 | Jacob Kann, Val H. Smith | Estimating the probability of exceeding elevated pH values critical to fish populations in a hypereutrophic lake | Academic Article | Water Quality | Upper Klamath | 180102 | Current eutrophication models typically are used to predict seasonal mean conditions. However, the risk of | Water Quality, pH | |
2005 | Jacob Kann, Eugene B. Welch | Wind Control on Water Quality in Shallow, Hypereutrophic Upper Klamath Lake, Oregon | Academic Article | Water Quality | Upper Klamath | 1801020 | Large blooms of cyanobacteria, primarily Aphanizomenon flos-aquae, are linked to poor water quality in Upper Klamath Lake, | wind mixing, water column stability, water quality, blue-green algal blooms, fish kills | |
2009 | USDA | Sprague River CEAP Study Report | Technical Report | Hydrology, In-Stream Flow / Flow Regime, Land Management & Irrigation | Middle Sprague, Sprague - Sycan | 18010202 | The Sprague River CEAP study was designed to provide information about conservation practices through field monitoring and computer model simulations of the hydrologic budget. The Danish Hydrologic Institute's MIKE SHE hydrologic model was selected as the most appropriate hydrologic software. The MIKE SHE, an integrated hydrological modeling system, covers the entire land phase of the hydrological cycle, linking surface runoff with channel hydraulics and ground water hydrology. | Sprague River CEAP, monitoring, hydrology | |
2018 | Lowe, J.P., R.D. Cooper-Caroselli, L.S. Brophy, R.N. Fuller | Coastal Resource Planning within the Klamath River Estuary Task 3 (Spit Assessment): Summary Report | Technical Report | Estuary of the Klamath | Klamath Estuary, Lower Klamath | 180102 | This report constitutes the deliverable for Task 3 ("Assessment of the Klamath Estuary Spit") in the Estuary Technical Group's (ETG's) contract with the Yurok Tribe executed April 18, 2016. The contracts' goal is for ETG to assist the Tribe with coastal resource and climate change adaptation planning for the Klamath River Estuary. The original Scope of Work developed by the Tribe for the contract focused strongly on recommendations for improvements to the "Sea Level Affecting Marshes Model" ("SLAMM") for the Klamath River Estuary. However, during the kick-off meeting in May 2016, the Tribe expressed its interest in thinking more broadly about ways to approach potential impacts of climate change to the estuary, rather than focusing on SLAMM. In subsequent discussions with the Tribe this was re-emphasized. For example, rather than developing data recommendations specifically to improve SLAMM as described in Task 1 ("Data and Model Review"), it was agreed that the ETG team would deliver broader data recommendations for improving the Tribe's ability to understand potential estuary habitat responses to climate change. These recommendations would constitute a combined deliverable for Tasks 1 and 2 (Task 2: "Data recommendations") which would be delivered after the Tribe's planned Klamath Estuary Workshop to be held in January 2018. As an initial step towards this combined deliverable, the ETG team delivered monitoring recommendations on July 7, 2016. Results of the recommended monitoring would support the Tribe's climate change adaptation planning in several ways: for example, the results could be used to support development of estuary habitat maps and models (including SLAMM if desired), and to improve general understanding of estuary conditions. | Klamath River Estuary | |
2014 | Yurok Tribe Environmental Program, | Research Health Report. Results from Tissue Sampling, 2010-2012 | Technical Report | Aquatic Habitat / Invertebrates / Insects, Contaminants, Water Quality | Klamath Basin | 180102 | The purpose of this study was to investigate concerns identified by the Yurok Tribal membership about the health and safety of Yurok Waters, the Klamath River, and key aquatic species relied upon for culture, subsistence and economic benefits. Community concerns were identified in surveys conducted by YTEP in 2007 and the grant was funded by EPA National Center for Environmental Research in 2008. A large component of the study was sample and test selected aquatic species for a range of contaminants that could impact resource and human health, including heavy metals, pesticides and bio-toxins. | Water Quality, Heavy metals, Pesticides, Bio-toxins, Contaminants, | |
2005 | Robert L. Hoffman, Christopher R. Currens, Mary Ann Madej, Bob Truitt, Laura Bridy, Andrew Duff, Sean B. Smith, Sid Covington | Klamath Network Water Quality Report (Phase II) | Technical Report | Water Quality | Klamath Basin | 180102 | The Klamath Network (KLMN) is one of 32 National Park Service (NPS) networks responsible for developing vital signs-based monitoring programs for managing the longterm ecosystem health of the nation’s parks. The park units of the Klamath Network are Crater Lake National Park (CRLA), Lassen Volcanic National Park (LAVO), Lava Beds National Monument (LABE), Oregon Caves National Monument (ORCA), Redwood National and State Parks (RNSP), and Whiskeytown National Recreation Area (WHIS). National Park Service networks are required to formulate Vital Signs Monitoring Plans, consisting of three phases: Phase I compiles background information and data on network park unit resources and presents conceptual models for each park unit ecosystem; Phase II provides an augmented Phase I and the selection and prioritization of vital signs; and Phase III will include the entire scope of information in Phases I and II, as well as the monitoring objectives, sampling designs and protocols, and data management and analysis procedures of a long-term vital signs monitoring program. The Klamath Network Phase II Water Quality Report is intended to provide an overview of the previous water quality related inventory and monitoring work conducted in each of the network’s six park units and provide guidance in the direction of future monitoring objectives. The Phase II Report summarizes the activities undertaken to select vital signs to be used for monitoring the aquatic resources of Klamath Network park units. | Water Quality | |
2014 | Suzanne Fluharty, Kathleen Sloan, | Understanding the Cumulative Effects of Environmental and Psycho-social Stressors that Threaten the Pohlik-lah and Ner-er-ner Lifeway: The Yurok Tribe’s Approach | Technical Report | Miscellaneous | Klamath Basin | 180102 | This study is a screening study, providing a ‘snap-shot’ of existing conditions during the research years of 2009-2013. A brief summary of the project’s research methodology is offered here. (See Grant RD-83370801-0, Quality Assurance Project Plan for an in depth description of methods.) This study was conducted in a multi-year, phased approach and includes both the review and consideration of pre-existing, secondary data (surveys, archival documents, ethnographic interviews, GIS databases, and environmental data on pesticide use) and the collection of primary new data generated through interviews, public participation geographic information system sessions, and chemical screening of surface water and tissue samples from targeted species. The first year involved review of previous data, community scoping and planning, the second and third years, public participation sessions, two tiers of field sampling, and laboratory analysis. The fourth and fifth years comprised data analysis and reporting. | Cumulative Effects, Stressors | |
2013 | Eric C. Dinger, Daniel A. Sarr, Sean R. Mohren, Kathryn M. Irvine, Charles E. Stanley | Integrated Aquatic Community and Water Quality Monitoring of Wadeable Streams in the Klamath Network | Technical Report | Water Quality | Klamath Basin | 180102 | The long-term sampling protocol for wadeable streams in the Klamath Inventory and Monitoring Network is the result of a collaborative effort of park personnel and the Network staff. This protocol covers five of the six Network park units: Crater Lake National Park, Oregon Caves National Monument, Lassen Volcanic National Park, Redwood National and State Parks, and Whiskeytown National Recreation Area. Lava Beds National Monument is not covered due to lack of surface water resources. | Water Quality | |
2012 | Eric C. Dinger, Daniel A. Sarr, Sean R. Mohren, R. L. Hoffman. | Integrated aquatic community and water quality monitoring of mountain ponds and lakes in the Klamath Network | Technical Report | Water Quality | Klamath Basin | 180102 | The long-term sampling protocol for mountain lakes and ponds in the Klamath Inventory and Monitoring Network is the result a collaborative effort of park personnel, USGS aquatic ecologist, and the Network staff. | Water Quality, Monitoring, Sampling, | |
2012 | Collin A. Eagles-Smith, Branden L. Johnson, U. S. Geological Survey, | Contaminants in the Klamath Basin: Historical Patterns, Current Distribution, and Data Gap Identification | Technical Report | Contaminants, Water Quality | Klamath Basin | 180102 | The Klamath Basin in California and Oregon is a diverse and productive region that supports numerous ecological, economic, and cultural benefits. However, competing uses and major changes to the Basin’s hydrology have severely impacted the natural resources of the region. Efforts are underway for major restoration activities within the basin, with the goal of better balancing the diverse use of land and water resources. However, the myriad of ecological stressors on the basin’s resources can complicate predicting the trajectory and success of restoration efforts, thus it is important to inventory those stressors and identify critical data gaps prior to implementing actions. The Klamath Basin (approximately 31,000 square kilometers) has a relatively well‐documented history of contaminant impacts associated with historical pesticide use on agricultural lands. Agriculture accounts for approximately 6 percent of the land use in the entire basin, most of which exists in the Lost River, Shasta River, and Upper Klamath Lake subbasins (59, 14, and 11 percent, respectively). However, a current inventory of available data on contaminant distribution and sources is lacking. Thus, the goal of this document is to summarize what is currently known about past and current contaminant distribution and impacts of contaminants on the ecological communities throughout the basin. Additionally, we identify key data gaps which, when addressed, will facilitate a more thorough understanding of the factors driving contaminant cycling and ecological exposure so that efforts can be implemented to help minimize the threats. | Contaminants | |
2017 | Jesse C. Wiesenfeld, Damon H. Goodman, · Andrew P. Kinziger | Riverscape genetics identifies speckled dace (Rhinichthys osculus) cryptic diversity in the Klamath–Trinity Basin | Academic Article | Other threatened fishes | Klamath Basin, Trinity River | 18010211 | Cataloging biodiversity is of great importance given that habitat destruction has dramatically increased extinction rates. While the presence of cryptic species poses challenges for biodiversity assessment, molecular analysis has proven useful in uncovering this hidden diversity. Using nuclear microsatellite markers and mitochondrial DNA we investigated the genetic structure of Klamath speckled dace (Rhinichthys osculus klamathensis), a subspecies endemic to the Klamath–Trinity basin. Analysis of 25 sample sites | Riverscape genetics, Cryptic species, Speckled dace, Rhinichthys osculus | |
2010 | Andreas Krause | One Hundred and Fifty Years of Sediment Manipulation on the Trinity River, CA | Academic Article, Conference Proceeding | Habitat Restoration, Sediment & Geomorphology, Trinity River, Water Quality | Trinity River, Lower Klamath | 18010211 | This paper explores the history of gold mining, gravel mining, and river restoration activities on the upper 42 miles of Trinity River, CA between Lewiston Dam and the North Fork Trinity River. Newly developed quantitative estimates of the sediment supply impacts associated with these activities are presented. Intensive hydraulic mining since the 1860’s has contributed vast amounts of sediment to the Trinity River. Contributions from the La Grange mine alone were sufficient to aggrade the valley bottom by over 3 feet. The longitudinal profile shows preliminary evidence of a persistent sediment wave resulting from hydraulic mining activities. Subsequent dredger mining overturned more than 70 percent of the floodplains. Historic gravel mining operations likely extracted between 60,000 and 125,000 cubic yards of gravel from the channel. A surprising result of this research is that river restoration activities over the last 40 years have extracted nearly as much gravel from the channel as they have augmented – roughly 90,000 cubic yards. Repeat bulk sampling between 2001 and 2009 showed reductions of up to 50 percent in the sand content of the substrate. Additional studies are underway to better understand the legacy impacts of mining and river restoration activities on the fluvial geomorphology and channel complexity of the Trinity River. | Trinity River, Geomorphology, | |
2017 | Miguel F. Barajas | Development of a Structured Adaptive Approach to Klamath Basin Sucker Recovery Planning. | Academic Article | Adaptive Management, Suckers | Klamath Basin | 1801020 | Listed as endangered in 1988, the Lost River sucker (Deltistes luxatus) and Shortnose sucker (Chasmistes brevirostris) were once abundant and widely distributed in the Klamath Basin in Southern Oregon and Northern California. Populations of both species have been declining since the late 1960’s. Factors thought responsible for declines include naturally occurring disturbances (e.g., periodic drought), water resource and land development activities, degradation of habitat and water quality, and interactions with introduced exotic species. Detection of any substantial adult recruitment for the last few decades has been minimal. We used a quantitative decision modeling approach to explore potential outcomes of alternative conservation strategies that include captive propagation and catch, grow, and release. Uncertainty about the factors responsible for the apparent lack of recruitment was represented using alternative models of system dynamics. Sensitivity analysis indicated that the model predictions were highly sensitive to population dynamics during early life stages and the alternative ideas of system dynamics. To address these uncertainties, I propose an adaptive approach to sucker recovery that integrates monitoring, research, and management. | Structured Adaptive Approach, Lost River sucker (Deltistes luxatus), Shortnose sucker (Chasmistes brevirostris), Recovery Planning | |
2017 | Joseph R. Benjamin, Kevin McDonnell, Jason B. Dunham, William R. Brignon, James T. Peterson | Structured Decision Making for Conservation of Bull Trout (Salvelinus confluentus) in Long Creek, Klamath River Basin, South-Central Oregon | Technical Report | Steelhead/Rainbow Trout | Upper Klamath | 18010203 | With the decline of bull trout (Salvelinus confluentus), managers face multiple, and sometimes contradictory, management alternatives for species recovery. Moreover, effective decision-making involves all stakeholders influenced by the decisions (such as Tribal, State, Federal, private, and non-governmental organizations) because they represent diverse objectives, jurisdictions, policy mandates, and opinions of the best management strategy. The process of structured decision making is explicitly designed to address these elements of the decision making process. Here we report on an application of structured decision making to a population of bull trout believed threatened by high densities of nonnative brook trout (S. fontinalis) and habitat fragmentation in Long Creek, a tributary to the Sycan River in the Klamath River Basin, south-central Oregon. This involved engaging stakeholders to identify (1) their fundamental objectives for the conservation of bull trout, (2) feasible management alternatives to achieve their objectives, and (3) biological information and assumptions to incorporate in a decision model. Model simulations suggested an overarching theme among the top decision alternatives, which was a need to simultaneously control brook trout and ensure that the migratory tactic of bull trout can be expressed. More specifically, the optimal management decision, based on the estimated adult abundance at year 10, was to combine the eradication of brook trout from Long Creek with improvement of downstream conditions (for example, connectivity or habitat conditions). Other top decisions included these actions independently, as well as electrofishing removal of brook trout. In contrast, translocating bull trout to a different stream or installing a barrier to prevent upstream spread of brook trout had minimal or negative effects on the bull trout population. | Bull trout (Salvelinus confluentus), | |
2015 | Laurel Genzoli, Robert O. Hall, J. Eli Asarian, Jacob Kann | Variation and Environmental Association of Ecosystem Metabolism in the Lower Klamath River: 2007-2014 | Academic Article, Technical Report | Water Quality | Lower Klamath | 18010209 | The Klamath River and some of its tributaries are designated on the Clean Water Act (CWA) Section 303(d) list as impaired water bodies. Water quality is a concern in the Klamath River because it affects culturally and economically important salmon fisheries as well as public health. During the summer months, photosynthesis by aquatic plants and algae attached to the streambed elevate dissolved oxygen (O2) concentrations during the day, creating a 24-hour cycle in dissolved O2 concentrations. Respiration at night by those same organisms and bacteria has the reverse effect, depressing dissolved O2 levels. Resulting low nighttime dissolved O2 concentrations can exceed water quality standards and be stressful to fish (NCRWQCB 2010). Ecosystem metabolism describes the fixation of organic carbon (gross primary production, GPP) and the mineralization of organic carbon (ecosystem respiration, ER). GPP and ER are integrative measures of river ecosystem health, and are complementary to more commonly used structural metrics that are regularly monitored on the Klamath River, such as dissolved O2 concentration, water temperature, and periphyton biomass. Ecosystem metabolism directly controls dissolved O2 concentrations in aquatic ecosystems and algal biomass, in part, forms the base of animal productivity in river food-webs (Thorp and Delong 2002, Cross et al. 2013). | ecosystem metabolism, Lower Klamath River, | |
2015 | Nadia D. Gillett, Yangdong Pana, J. Eli Asarian, Jacob Kann | Spatial and temporal variability of river periphyton below a hypereutrophic lake and a series of dams | Academic Article | Dam Operations, Water Quality | 18010206 | Klamath River is described as an “upside-down” river due to its origins from the hypereutrophic Upper Klamath Lake (UKL) and hydrology that is heavily regulated by upstream dams. Understanding the lake and reservoir effects on benthic communities in the river can inform important aspects of itswater quality dynamics. Periphyton samples were collected in May–November from 2004, 2006–2013 at nine long-term monitoring sites along 306 river km below UKL and a series of dams (n = 299). Cluster analysis of periphyton assemblages identified three statistically different periphyton groups (denotedGroups 1–3). Group 1 occurred primarily in the upstream reach for June–October and had a higher percentage of sestonic species, including the cyanobacteria Aphanizomenon flos-aquae and Microcystis aeruginosa, consistent with the presence of upstream reservoirs. Group 2 had the highest relative biomass of diatoms and lowest relative biomass of cyanobacteria. Sites in the lower reach of the Klamath River fell into Group 2 inMay–June and transitioning into Group 3 for July–October. Group 3 was dominated by nitrogen (N)-fixing species, including three diatoms (Epithemia sorex, Epithemia turgida, and Rhopalodia gibba) with cyanobacterial endosymbionts and the cyanobacterium Calothrix sp. Periphyton assemblages were strongly associated with temporal variations in flow conditions (e.g., decreasing flow from spring to fall) and spatial gradients in nutrient concentrations (e.g., decreasing from upstream to downstream). The inverse longitudinal relationship between periphyton biomass and nutrients may be explained by the ability of benthic N-fixers (Group 3) to overcome N limitation. Overall results showed a strong inverse relationship between the relative biomass of N-fixers and nitrogen concentrations and flow. This long-term dataset provides valuable insight into Klamath River's seasonal and longitudinal patterns of benthic algal communities and associated environmental variables. | Lentic-lotic interaction, Benthic algae, Nitrogen-fixers, Dams, Klamath river | ||
2004 | Lawrence H. Fisher, Tamara M. Wood | Effect of Water-Column pH on Sediment-Phosphorus Release Rates in Upper Klamath Lake, Oregon, 2001 | Technical Report | Water Quality | Upper Klamath | 18010206 | Sediment-phosphorus release rates as a function of pH were determined in laboratory experiments for sediment and water samples collected from Shoalwater Bay in Upper Klamath Lake, Oregon, in 2001. Areal release rates for a stable sediment/water interface that is representative of the sediment surface area to water column volume ratio (1:3) observed in the lake and volumetric release rates for resuspended sediment events were determined at three different pH values (8.1, 9.2, 10.2). Ambient water column pH (8.1) was maintained by sparging study columns with atmospheric air. Elevation of the water column pH to 9.2 was achieved through the removal of dissolved carbon dioxide by sparging with carbon dioxide-reduced air, partially simulating water chemistry changes that occur during algal photosynthesis. Further elevation of the pH to 10.2 was achieved by the addition of sodium hydroxide, which doubled average alkalinities in the study columns from about 1 to 2 milliequivalents per liter. Upper Klamath Lake sediments collected from the lake bottom and then placed in contact with lake water, either at a stable sediment/water interface or by resuspension, exhibited an initial capacity to take up soluble reactive phosphorus (SRP) from the water column rather than release phosphorus to the water column. At a higher pH this initial uptake of phosphorus was slowed, but not stopped. This initial phase was followed by a reversal in which the sediments began to release SRP back into the water column. The release rate of phosphorus 30 to 40 days after suspension of sediments in the columns was 0.5 μg/L/day (micrograms per liter per day) at pH 8, and 0.9 μg/L/day at pH 10, indicating that the higher pH increased the rate of phosphorus release by a factor of about two. The highest determined rate of release was approximately 10% (percent) of the rate required to explain the annual internal loading to Upper Klamath Lake from the sediments as calculated from a lake-wide mass balance. | Upper Klamath Lake, pH, Phosphorus Release, | |
2017 | Peter B. Moyle, Robert A. Lusardi, Patrick J. Samuel, Jacob V. E. Katz, UC Davis, California Trout | State of the Salmonids: Status of California’s Emblematic Fishes 2017 | Technical Report | Salmon | Upper Klamath | California has, or had, 32 distinct kinds of salmonid fishes. They are either endemic to California or at the southern end of their ranges. Most are in serious decline: 45% and 74% of all salmonids will likely become extirpated from California in the next 50 and 100 years, respectively, if present trends continue. Our results suggest that California will lose more than half (52%) of its native anadromous salmonids and nearly a third (30%) of its inland taxa in just 50 years under current conditions. Climate change is a major overarching threat driving population declines throughout California and strongly affects the status of 84% of all salmonids reviewed. In addition, dams, agricultural operations, estuary alteration, non-native species, production hatcheries, and myriad other human-induced threats have contributed to declines. 81% of salmonids in California are now worse off than they were in 2007, when the previous version of this report was prepared. The changes in species status are the result of the 2012-2016 historic drought, improved data collection and review, and an improved understanding of climate change impacts. Returning these iconic species to sustainable levels requires access to productive and diverse habitats which promote the full range of life history diversity necessary to weather change. We recommend (i) protecting and investing in fully functioning watersheds such as the Smith River and Blue Creek, (ii) protecting and restoring source waters such as Sierra meadow systems, groundwater, and springs so that the impacts of climate change are reduced, (iii) restoring function and access to once productive and diverse habitats such as Central Valley floodplains, coastal lagoons, and estuaries, (iv) adopting reconciliation ecology as a basis for management in human dominated landscapes, (v) improving habitat connectivity and passage to historical spawning and rearing habitat, and (vi) improving salmonid genetic management throughout California. | Salmonids, Steelhead, Trout, Salmon | ||
2018 | UC Davis Center for Watershed Sciences | Shasta River – Program: Spring Rivers and Streams | Website | Salmon, Steelhead/Rainbow Trout, Water Quality | Mid Klamath | 180102 | Interdisciplinary teams of Center scientists are investigating the causes for the decline of salmon and steelhead in Shasta River, historically one of the most productive tributaries in the lower Klamath Basin. A large spring complex (Big Springs Creek) provides the majority of its water, particularly during the summer. Researchers are developing innovative approaches to restoring and sustainably managing this unique resource for both native fish and for irrigating local ranches and farms. Though Shasta River provides only 1 percent of the Klamath River’s streamflow, it historically produced 50 percent of the Chinook salmon -- and it still produces enough fish to support a large proportion of California’s commercial and recreational salmon fishery. Improving freshwater habitat in the Shasta results in disproportionally large benefits for the lower Klamath Basin. | Chinook salmon, Water Quality | |
2004 | J. Platt Bradbury, Steven M. Colman, Richard L. Reynolds | The history of recent limnological changes and human impact on Upper Klamath Lake, Oregon | Academic Article | Water Quality | Upper Klamath | 18010203 | Hypereutrophic Upper Klamath Lake has been studied for almost 50 years to evaluate the nature, cause, and effects of its very productive waters. Mitigation of undesirable effects of massive cyanobacterial blooms requires understanding their modern causes as well as their history. Knowledge of the pre-settlement natural limnology of this system can provide guidelines for lake restoration and management of land and water use strategies to maximize the benefits of this aquatic resource. This investigation uses a paleolimnological approach to document the nature and chronology of limnological and biological changes in Upper Klamath Lake for the past 200 years, covering the time when the lake was first described until today. A 45-cm gravity core, dated by 210Pb and diatom correlations, was analyzed for diatoms, pollen, akinetes (resting spores) of the cyanobacterium Aphanizomenon flos-aquae, reworked tephra shards, and sediment magnetic characteristics. Pollen profiles show little vegetation change during this time. In contrast, diatoms indicative of increased nutrient fluxes (P and Si) increase moderately, coinciding with the settlement of the region by Euro-Americans. Numerous settlement activities, including draining of lake-margin marshes, upstream agriculture and timber harvest, road construction, and boat traffic, may have affected the lake. Magnetic properties and reworked tephra suggest riparian changes throughout the basin and increased lithogenic sediment delivery to the lake, especially after 1920 when the marshes near the mouth of the Williamson River were drained and converted to agricultural and pasture land. Drainage and channelization also decreased the ability of the marshes to function as traps and filters for upstream water and sediments. Akinetes of Aphanizomenon flos-aquae record progressive eutrophication of Upper Klamath Lake beginning in the 20th century and particularly after 1920 when lake-margin marsh reclamation more than doubled. | Diatoms, Eutrophication, Limnology, Sediment magnetic properties, Tephra, Upper Klamath Lake | |
2007 | Allison R. Aldous, Christopher B. Craft, Carla J. Stevens, Matthew J. Barry, Leslie B. Bach | Soil Phosphorus Release from a Restoration Wetland, Upper Klamath Lake, Oregon | Academic Article, Technical Report | Water Quality | Upper Klamath | 18010203 | Many wetland restoration projects are initiated with phosphorus (P) retention as a primary objective. While undisturbed wetlands often are net sinks for P and other nutrients, there is evidence that newly flooded restoration wetlands on former agricultural land initially release P to surface waters. The objectives of this study were to: 1) measure P release from soils to overlying surface waters that would occur when re-flooding agricultural fields to restore a lake fringe wetland connected to Upper Klamath Lake, Oregon; and 2) identify management strategies to abate nutrient release from soils during restoration to minimize P loading to Upper Klamath Lake. We simulated the process of re-flooding soils using mesocosms in a laboratory experiment. The soils were flooded with lake water, and the water was replenished on a weekly basis. The net P flux from soils to surface water was estimated by measuring differences in P concentrations between water that had been in the mesocosms and the lake water used for replenishment. After the flooding experiment, we measured the concentrations of four forms of soil P using a modification of the Hedley procedure, to examine relationships between soil P chemistry and P release. The majority of P was released in the first two days of the experiment, and all detectable P was released by the end of the second month. We estimated that 1–9 g P/m2 were released from the soils to the water column over the course of the experiment, which amounted to 1%–16% of total soil P. Scaling up to the entire wetland, this totals approximately 64 tons P released over 3,000 ha. We did not find any statistically significant relationships between any of the four forms of soil P and the amount of P released in the flooding experiment. | Eutrophication, Phosphorus retention, Soil phosphorus fractionation, Water quality, Wetland restoration | |
2018 | Daniel McCool | Integrated Water Resources Management and Collaboration: The Failure of the Klamath River Agreements | Academic Article | Dam Operations, Mainstem Klamath River | Klamath Basin | 180102 | Integrated Water Resources Management (IWRM) is one of the most utilized models in water policy and administration. One of the crucial components in IWRM is collaboration, where multiple stakeholders negotiate solutions. This article explores the role of collaboration in one of the most contentious water conflicts in the nation—the Klamath River. The range of stakeholders is enormous and complex, including Indian tribes, farmers, fishermen, recreationists, environmentalists, advocates of endangered species, two states, and multiple federal agencies. The parties in the Klamath Basin negotiated three settlements to resolve many of the major issues. However, the U.S. Congress failed to approve the settlements in late 2015, effectively ending this long-term effort to resolve these vexing issues through collaborative negotiations. This conflict is analyzed using a multi-method approach, and discusses how the failure of the settlement process can provide insights into the role of collaboration in IWRM, and suggests refinements to the model. | Integrated Water Resources Management (IWRM), Klamath River Basin, Klamath Bureau of Reclamation, Klamath Irrigation Project, Klamath Hydroelectric Settlement Agreement (KHSA) | |
2006 | C. K. Parken , R. E. McNicol, J. R. Irvine | Habitat-based methods to estimate escapement goals for data limited Chinook salmon stocks in British Columbia, 2004 | Technical Report | Salmon | Fisheries and Oceans Canada requires escapement goals for Chinook salmon (Oncorhynchus tshawytscha) stocks to evaluate their status and achieve objectives established by international agreements and domestic policy. Unfortunately the data typically needed to establish these ‘goals’, using stockrecruitment techniques, are expensive to gather and are, for most stocks, lacking. This prompted us to develop the habitat-based approach to generate escapement goals described in this report. We related productive capacity to freshwater habitat area based on results from a meta-analysis of 25 Chinook stocks. Stocks were distributed between central Alaska and northern Oregon and represented a broad range of environments and life history. We developed an allometric model that predicted Smsy and Srep (spawners required to produced maximum sustained yield and replacement, respectively) from the watershed area and assessed the model’s performance. The model adequately predicted the Smsy and Srep for an independent data source and out-performed a current interim method applied to British Columbia (BC) Key Streams. The habitat-based approach adequately predicted Smsy and Srep for seven case study examples, although it overestimated the productive capacity of stocks with relatively small spawning areas. Our habitat-based model can generate biologically-based escapement goals, rooted in fish-production relationships, for data limited stocks over a broad range of environments. This simple approach requires easily acquirable data and makes few assumptions. However, spawner escapements of known accuracy and reliability are required, which may impede implementation for some systems. The approach is wellsuited for most data limited stocks in BC and can be tested and refined as new stock-recruitment data become available. | Chinook salmon, Oncorhynchus tshawytscha | |||
2009 | A. Elizabeth Fetscher, Lilian Busse, Peter R. Ode | Standard Operating Procedures for Collecting Stream Algae Samples and Associated Physical Habitat and Chemical Data for Ambient Bioassessments in California | Technical Report | Water Quality | United States | This document is the Standard Operating Procedure (SOP) for collecting and field-processing stream algae for the California State Water Resources Control Board’s Surface Water Ambient Monitoring Program (SWAMP). Instructions are provided for the following: | Water Quality, Algae | ||
2003 | J.M. Eilers, C. P. Gubala | Bathymetry and Sediment Classification of the Klamath Hydropower Project Impoundments | Technical Report | Dam Operations, Water Quality | Klamath Basin | 180102 | Bathymetric surveys were conducted on Lake Ewauna, Keno Reservoir, JC Boyle Reservoir, Copco Reservoir, and Irongate Reservoir. A supervised sediment classification was also conducted on each of these impoundments. A general assessment of the magnitude of accumulated sediment in the impoundments was conducted by comparing the current bathymetry of the impoundments with available information on pre-impoundment topography. The results indicate the sediment accumulation in the impoundments is relatively modest, generally ranging from 5 to 15 percent of the current volumes. | Sediment, Bathymetry, JC Boyle Reservoir, Upper Ewauna, Keno Reservoir, Copco Reservoir, Irongate Reservoir | |
2016 | Wojciech Krzton, Krzysztof Pudas, Agnieszka Pociecha, Magdalena Strzesak, Joanna Kosiba, Edward Walusiak, Ewa Szarek-Gwiazda, Elzbieta Wilk-Wozniak | Microcystins affect zooplankton biodiversity in Oxbow Lakes | Academic Article | Aquatic Habitat / Invertebrates / Insects, Water Quality | The authors tested the hypothesis that zooplankton diversity and density are affected by the presence of cyanotoxins in the water. The authors focused on 4 oxbow lakes of the Vistula River in southern Poland, which are subjected to mass cyanobacterial development. In 2 of the oxbows (Piekary and Tyniec), microcystins released into the water were found. The highest concentration of microcystins (0.246mg/L) was observed for microcystins LR. Zooplankton diversity showed a weak response to the presence of microcystins released into the water. The Shannon index (H’) of total zooplankton diversity decreased in the Piekary and Tyniec oxbows during periods when the microcystin concentrations were highest. The same trend was noted for diversity of rotifers in both oxbows and for diversity of copepods in Piekary, but not for copepods in Tyniec. No such trends were found for the diversity of cladocerans in any of the oxbows, nor was a relationship found between density of zooplankton and microcystins. Statistical analyses showed that the number of species in individual samples was negatively correlated with the levels of sulfates, phosphates, and ammonia, but the microcystin concentration was positively related to those levels. This points to the complexity of the interactions and synergies among toxins, abiotic factors, and zooplankton biodiversity. In focusing on the problem of cyanotoxins, conservation studies should pay attention to this complexity. | Cyanobacterial toxins, Zooplankton, Diversity, Oxbows | |||
2009 | Ned Butler, James C. Carlisle, Regina Linville, Barbara Washburn | Microcystins: A brief overview of their toxicity and effects, with special reference to fish, wildlife, and livestock | Technical Report | Aquatic Habitat / Invertebrates / Insects, Dam Operations, Water Quality | United States | Cyanobacteria, also known as blue-green algae, are a family of single-celled algae that proliferate in water bodies such as ponds, lakes, reservoirs, and slow-moving streams when the water is warm and nutrients are available. Many cyanobacteria species produce a group of toxins known as microcystins, some of which are toxic. The species most commonly associated with microcystin production is Microcystis aeruginosa. Upon ingestion, toxic microcystins are actively absorbed by fish, birds and mammals. Microcystin primarily affects the liver, causing minor to widespread damage, depending on t The blue-green algae Microcystis aeruginosa can produce a family of toxins known as microcystins. They can cause liver damage that can lead to death in dogs and livestock. No known deaths have been reported in humans from the ingestion of microcystins. Fish and birds are also at risk for microcystin toxicity. Regardless of species, the mechanism of action is the same – the inhibition of protein phosphatase which causes primarily liver damage, but also affects other organs. Microcystins also act as a tumor promoter. While microcystins are not as toxic as many natural toxins, they are becoming more and more ubiquitous in California, leading to greater opportunities for exposures. Microcystis blooms occur in quiet, warm waters that are nutrient-rich; the type of conditions that are found in lakes, reservoirs, dammed rivers, and even agricultural drainage ditches throughout the state. Microcystins have also been detected in the Delta. Steps are being taken to begin to address this problem. In 2008, the Klamath River was added to the Clean Water Act’s 303d list as an impaired waterbody as a result of microcystis blooms. It appears that some dams on this river will be removed along the Klamath, which should reduce the frequency or possibly eliminate toxic blooms. Affirmative steps such as these will help reduce the risk of exposure and adverse effects associated with microcystins. | Microcystins, toxicity, Klamath River, | ||
2013 | Adam Bownik | Effects of cyanobacterial toxins, microcystins on freshwater invertebrates | Academic Article | Aquatic Habitat / Invertebrates / Insects, Water Quality | Cyanobacteria, also known as blue-green algae, are prokaryotic, phototrophic microorganisms that may form massive blooms in eutrophic water reservoirs. Some cyanobacterial strains are able to produce secondary metabolites – cyanotoxins that may be hazardous to aquatic and terrestial animals. These compunds can be grouped into: hepatotoxins, neurotoxins, cytotoxins dermatotoxins and irritant toxins. Microcystins are well-known cyclic heptapeptides acting as inhibitors of protein phosphatases type 1 and 2A. These cyanotoxins induce various adverse effects in freshwater invertebrates including biochemical, physiological and behavioral changes. Moreover, accumulation of microcystins in different tissues occurs, therefore transfer of these cyanotoxins through the food chain to animals being at higher trophic levels may be possible. The purpose of this paper is to review the knowledge on the effects of microcystins on three main groups of freshwater invertebrates: zooplankton, higher crustaceans, mollusks and to indicate possible ecotoxicological consequences of this impact on aquatic environment and invertebrate aquacultures. | cyanobacteria, microcystins, bivalves, gastropods, copepods, cladocerans | |||
2017 | J. Ryan Bellmore, Jeffrey J. Duda, Laura S. Craig, Samantha L. Greene, Christian E. Torgersen, Mathias J. Collins, Katherine Vittum | Status and trends of dam removal research in the United States | Academic Article, Technical Report | Dam Removal | United States | Aging infrastructure coupled with growing interest in river restoration has driven a dramatic increase in the practice of dam removal. With this increase, there has been a proliferation of studies that assess the physical and ecological responses of rivers to these removals. As more dams are considered for removal, scientific information from these dam-removal studies will increasingly be called upon to inform decisions about whether, and how best, to bring down dams. This raises a critical question: what is the current state of dam-removal science in the United States? To explore the status, trends, and characteristics of dam-removal research in the U.S., we searched the scientific literature and extracted basic information from studies on dam removal. Our literature review illustrates that although over 1200 dams have been removed in the U.S., fewer than 10% have been scientifically evaluated, and most of these studies were short in duration (<4 years) and had limited (1–2 years) or no pre-removal monitoring. The majority of studies focused on hydrologic and geomorphic responses to removal rather than biological and water-quality responses, and few studies were published on linkages between physical and ecological components. Our review illustrates the need for long-term, multidisciplinary case studies, with robust study designs, in order to anticipate the effects of dam removal and inform future decision making. | Dam removal, Ecological responses, | ||
2017 | KRRC, Klamath River Renewal Corporation, CEQA, Dam Removal, | Klamath River Renewal Project California Environmental Quality Act (CEQA) and California and Oregon 401 Water Quality Certifications Technical Support Document | Technical Report, Website | Dam Removal, Habitat Restoration, Hatcheries, Water Quality, Water Temperature | Klamath Basin | 180102 | The primary objective of this Technical Support Document is to provide the California State Water Resources Control Board (SWRCB) and the Oregon Department of Environmental Quality (ODEQ) the information they require to prepare the Clean Water Act Section 401 Water Quality Certifications (401 Certifications) for the Lower Klamath Project, also referred to as the Klamath River Renewal Project (Project). The 401 Certifications are required before the Federal Energy Regulatory Committee (FERC) can issue a final surrender order for the Project. In addition, this document provides the latest available technical and field information developed by the Klamath River Renewal Corporation and its consultants (KRRC), for SWRCB’s use in preparation of an Environmental Impact Report (EIR) consistent with the California Environmental Protection Act (CEQA). The SWRCB and ODEQ communicated their specific information needs via letters dated August 24, 2017 and July 19, 2017, respectively. Copies of the Additional Information Request letters can be found in Appendix A. | Klamath River Renewal Corporation (KRRC), | |
2014 | Jennifer L. Cochran-Biederman, Katherine E. Wyman, William E. French,Grace L. Loppnow | Identifying correlates of success and failure of native freshwater fish reintroductions | Academic Article | Habitat Restoration | Reintroduction of imperiled native freshwater fish is becoming an increasingly important conservation tool amidst persistent anthropogenic pressures and new threats related to climate change.We summarized trends in native fish reintroductions in the current literature, identified predictors of reintroduction outcome, and devised recommendations for managers attempting future native fish reintroductions. We constructed random forest classifications using data from 260 published case studies of native fish reintroductions to estimate the effectiveness of variables in predicting reintroduction outcome. The outcome of each case was assigned as a success or failure on the basis of the author’s perception of the outcome and on whether or not survival, spawning, or recruitment were documented during post-reintroduction monitoring. Inadequately addressing the initial cause of decline was the best predictor of reintroduction failure. Variables associated with habitat (e.g., water quality, prey availability) were also good predictors of reintroduction outcomes, followed by variables associated with stocking (e.g., genetic diversity of stock source, duration of stocking event). Consideration of these variables by managers during the planning process may increase the likelihood for successful outcomes in future reintroduction attempts of native freshwater fish. | native fish, population supplementation, program evaluation, random forests, reintroduction, translocation | |||
1998 | Vera Sit, Brenda Taylor | Statistical Methods for Adaptive Management Studies | Technical Report | Adaptive Management | As adaptive management becomes more widely recognized as a foundation element of good land stewardship, many resource professionals are attempting to extend its theories and principles into common practice. They wish to conduct powerful management experiments, to monitor the outcomes effectively and efficiently, and to use the resulting data to make reliable inferences for future decisions. Most managers, however, have little formal training in the application of experimental design and statistics to the problems that they want to address through adaptive management. This book sets the stage for the in-depth discussions of key aspects of statistics in adaptive management. It includes a working definition of adaptive management, demonstrates the value of the application of adaptive management to forestry issues, and explains some of the differences between research studies and adaptive management techniques. | Adaptive Management | |||
2015 | Jennifer D. Jeffrey, Caleb T. Hasler, Jacqueline M. Chapman, Steven J. Cooke,Cory D. Suski | Linking Landscape-Scale Disturbances to Stress and Condition of Fish: Implications for Restoration and Conservation | Conference Proceeding | Habitat Restoration, Hydrology, In-Stream Flow / Flow Regime, Land Management & Irrigation, Water Quality | Humans have dramatically altered landscapes as a result of urban and agricultural development, which has led to decreases in the quality and quantity of habitats for animals. This is particularly the case for freshwater fish that reside in fluvial systems, given that changes to adjacent lands have direct impacts on the structure and function of watersheds. Because choices of habitat have physiological consequences for organisms, animals that occupy sub-optimal habitats may experience increased expenditure of energy or homeostatic overload that can cause negative outcomes for individuals and populations. With the imperiled and threatened status of many freshwater fish, there is a critical need to define relationships between land use, quality of the habitat, and physiological performance for resident fish as an aid to restoration and management. Here, we synthesize existing literature to relate variation in land use at the scale of watersheds to the physiological status of resident fish. This examination revealed that landscape-level disturbances can influence a host of physiological properties of resident fishes, ranging from cellular and genomic levels to the hormonal and whole-animal levels. More importantly, these physiological responses have been integrated into traditional field based monitoring protocols to provide a mechanistic understanding of how organisms interact with their environment, and to enhance restoration. We also generated a conceptual model that provides a basis for relating landscape-level changes to physiological responses in fish. We conclude that physiological sampling of resident fish has the potential to assess the effects of landscape-scale disturbances on freshwater fish and to enhance restoration and conservation. | Restoration, Conservation, Fish Stress, Landscape-Scale Disturbances | |||
2017 | Melissa M. Foley, Francis J. Magilligan, Christian E. Torgersen, Jon J. Major, Chauncey W. Anderson, Patrick J. Connolly, Daniel Wieferich, Patrick B. Shafroth, James E. Evans, Dana Infante, Laura S. Craig | Landscape context and the biophysical response of rivers to dam removal in the United States | Academic Article | Dam Removal, Monitoring Programs | United States | Dams have been a fundamental part of the U.S. national agenda over the past two hundred years. Recently, however, dam removal has emerged as a strategy for addressing aging, obsolete infrastructure and more than 1,100 dams have been removed since the 1970s. However, only 130 of these removals had any ecological or geomorphic assessments, and fewer than half of those included before- and after-removal (BAR) studies. In addition, this growing, but limited collection of dam-removal studies is limited to distinct landscape settings. We conducted a meta-analysis to compare the landscape context of existing and removed dams and assessed the biophysical responses to dam removal for 63 BAR studies. The highest concentration of removed dams was in the Northeast and Upper Midwest, and most have been removed from 3rd and 4th order streams, in low-elevation (< 500 m) and low-slope (< 5%) watersheds that have small to moderate upstream watershed areas (10± 1000 km2) with a low risk of habitat degradation. Many of the BAR-studied removals also have these characteristics, suggesting that our understanding of responses to dam removals is based on a limited range of landscape settings, which limits predictive capacity in other environmental settings. Biophysical responses to dam removal varied by landscape cluster, indicating that landscape features are likely to affect biophysical responses to dam removal. However, biophysical data were not equally distributed across variables or clusters, making it difficult to determine which landscape features have the strongest effect on dam-removal response. To address the inconsistencies across dam-removal studies, we provide suggestions for prioritizing and standardizing data collection associated with dam removal activities. | Dam removal, Biophysical response, Landscape context, Monitoring, | ||
2017 | Martin Liermann, George Pess, Mike McHenry, John McMillan, Mel Elofson, Todd Bennett, Raymond Moses | Relocation and Recolonization of Coho Salmon in Two Tributaries to the Elwha River: Implications for Management and Monitoring | Technical Report | Adaptive Management, Dam Operations, Habitat Restoration, Monitoring Programs, Salmon | In 2012 the lower of two Elwha River dams was breached, restoring access of anadromous salmonids to the middle Elwha River (between the two dams), including two distinct tributaries, Indian Creek and Little River. While comparable in size, Indian Creek is considerably less steep than Little River (mean slope of 1.0% versus 3.5%, respectively) and has a warmer stream temperature regime due to its source, Lake Sutherland. During and after breaching, Coho Salmon Oncorhynchus kisutch were relocated to these tributaries from lower Elwha River hatcheries (below the dams) to determine if individuals from a hatchery-dominated population would successfully spawn and seed the systems with juveniles and to assess differences in recolonization between the streams. Transplantation led to immediate spawning, which resulted in levels of smolt out-migrants per stream kilometer comparable with other established Coho Salmon populations in the Pacific Northwest. During the first 2 years of the relocation, redd densities in the two systems were similar but Indian Creek produced four to five times as many smolts per kilometer as Little River. In addition, fry out-migration occurred 2 to 4 weeks earlier in Indian Creek, as predicted by the warmer incubation temperatures. In the first years of the study, there was little evidence of natural colonization of the two tributaries by adults. However, in 2016 over half of the observed adults returning to the two tributaries were not transplanted, suggesting that the progeny from the transplanted fish were returning to their natal waters. This work demonstrates that transplanting hatchery dominated Coho Salmon adults into newly available habitat can result in immediate freshwater production that is comparable to other systems and that density and timing of juvenile out-migrants can differ dramatically based on the seeded habitat. | Coho Salmon, Oncorhynchus kisutch, Elwha River, Relocation, Recolonization, Monitoring, Management | |||
2017 | Daniel J. Prince, Sean M. O’Rourke, Tasha Q. Thompson, Omar A. Ali, Hannah S. Lyman, Ismail K. Saglam, Thomas J. Hotaling, Adrian P. Spidle, Michael R. Miller | The evolutionary basis of premature migration in Pacific salmon highlights the utility of genomics for informing conservation | Academic Article | Salmon | United States | The delineation of conservation units (CUs) is a challenging issue that has profound implications forminimizing the loss of biodiversity and ecosystem services. CU delineation typically seeks to prioritize evolutionary significance, and genetic methods play a pivotal role in the delineation process by quantifying overall differentiation between populations. Although CUs that primarily reflect overall genetic differentiation do protect adaptive differences between distant populations, they do not necessarily protect adaptive variation within highly connected populations. Advances in genomic methodology facilitate the characterization of adaptive genetic variation, but the potential utility of this information for CU delineation is unclear. We use genomic methods to investigate the evolutionary basis of premature migration in Pacific salmon, a complex behavioral and physiological phenotype that exists within highly connected populations and has experienced severe declines. Strikingly, we find that prematuremigration is associated with the same single locus across multiple populations in each of two different species. Patterns of variation at this locus suggest that the premature migration alleles arose froma single evolutionary eventwithin each species and were subsequently spread to distant populations through straying and positive selection. Our results reveal that complex adaptive variation can depend on rare mutational events at a single locus, demonstrate that CUs reflecting overall genetic differentiation can fail to protect evolutionarily significant variation that has substantial ecological and societal benefits, and suggest that a supplemental framework for protecting specific adaptive variation will sometimes be necessary to prevent the loss of significant biodiversity and ecosystem services. | Pacific salmon (Oncorhynchus spp.), conservation units (CUs), premature migration | ||
2017 | Jerri Bartholomew, Sascha Hallett, Rich Holt, Julie Alexander, Stephen Atkinson, Ryan Craig, Amir Javaheri, Meghna Babar-Sebens | Klamath River Fish Health Studies: Salmon Disease Monitoring and Research. Oregon State University, BOR/USGS Interagency Agreement #R15PG00065 FY2016 April 01, 2016 – March 31, 2017 Annual Report | Academic Article, Technical Report | Dam Operations, Monitoring Programs, Salmon | Klamath Basin | 180102 | The myxozoan parasite Ceratonova shasta infects the intestine of salmonid fishes, which can lead to enteronecrosis and mortality. The parasite is endemic to the Pacific Northwest of North America and has been responsible for high mortality in juvenile salmon in the Klamath River basin. Ceratonova shasta cycles between two hosts and two spore stages: waterborne actinospores released from freshwater polychaete worms infect salmonids and develop into myxospores, which are then infectious to polychaetes. The Bartholomew Lab at Oregon State University has been monitoring the spatial and temporal abundance of the parasite in the Klamath River basin since 2006 using sentinel fish exposures, river water sampling, and polychaete sampling. This report describes monitoring studies conducted in 2016. Those data are informing several models being developed to better predict disease effects under various temperature and flow conditions. Results from polychaete density and infection assays completed in 2016 were remarkably different from those obtained in previous years: Densities decreased at all monitoring sites following the high magnitude flow event in March 2016. Infection prevalence was generally low in 2016 (<1%) which is in contrast to levels observed in 2015 (>1%). However, by late spring (June), densities had begun to increase at river sites downstream IGD including the Seiad Valley and Orleans sites, which are not normally characterized by elevated densities prior to late summer. However, prevalence of infection was high in polychaetes at the Orleans site, resulting in estimates of 5,000-35,000 infected polychaetes m-2. We suggest that polychaetes displaced from reaches below Iron Gate dam during the high magnitude but short duration flood in March settled out at KOR resulting in the relatively high densities detected at this site. | Myxozoan parasite, Ceratonova shasta, Salmon, | |
2013 | Crystal Robinson, Quartz Valley Indian Reservation | Quartz Valley Indian Reservation Water Quality Monitoring and Assessment Report 2013 | Technical Report | Monitoring Programs, Water Quality | Scott River | 180102 | This document describes the water quality monitoring performed during 2013 by the Quartz Valley Indian Reservation (QVIR) Environmental Department. Our work is funded by Federal grants from the U.S. Environmental Protection Agency (USEPA) and is intended to help fulfill intentions of the Clean Water Act. Our efforts are designed to monitor the health of our local water bodies and to help protect waters for a variety of beneficial uses. The QVIR Environmental Department began the process of developing a Water Pollution Control Program in accordance with the Clean Water Act (CWA) in 2005. The Tribe set primary goals of ensuring salmonid spawning and rearing habitat, fishing, swimming, other wildlife habitat and cultural needs. The objective is to ensure these goals are met for the future protection and sustained use of valuable Reservation water resources, protection of public health and welfare, and the enhancement of water quality resources. The Tribe intends to protect and improve water resources through water quality monitoring, habitat evaluation, education and community outreach, planning and implementation. A Quality Assurance Project Plan (QVIR 2006a) for water quality monitoring was developed by the Tribal Environmental Program and approved by U.S. Environmental Protection Agency (U.S. EPA) in 2006. Current water quality conditions are annually evaluated using the water quality objectives developed from various state, federal and tribal entities. The North Coast Regional Water Quality Control Board (NCRWQCB) Basin Plan water quality objectives are determined for the protection of beneficial uses (e.g., salmonids, agriculture, and recreation) established for the Scott River and its tributaries. U.S. EPA's (2000a) | Water Quality, Quartz Valley Indian Reservation (QVIR), Water Temperature, | |
2013 | Hoopa Tribal Environmental Protection Agency, Water Quality, | Water Quality Monitoring by the Hoopa Tribal Environmental Protection Agency 2008–2012 PREPARED BY | Technical Report | Water Quality | Klamath Basin | 180102 | This report presents the results of the Hoopa Tribal Environmental Protection Agency’s (Hoopa TEPA) water quality monitoring within the Hoopa Valley Indian Reservation for the years 2008 to 2012. Hoopa TEPA is a member of the Klamath Basin Tribal Water Quality Work Group (Work Group) and has worked to develop and implement shared water quality monitoring protocols with the Yurok Tribe and the Karuk Tribe who also conduct monitoring in the Trinity and Lower Klamath basins. Samples were collected by Hoopa TEPA staff at two stations: the Klamath River at Saints Rest Bar and the Trinity River at Hoopa. The beginning and end of the sampling season varied by year, with samples collected from mid or late May through early or mid-October. Sampling frequency was generally monthly in 2008 and bi-weekly (every two weeks) in 2009-2012. Water samples were collected and analyzed for nutrients, chlorophyll-a, algal toxins, phytoplankton species (i.e., free-floating algae), and other chemical parameters. Periphyton samples (i.e., algae attached the riverbed) were collected by scraping a fixed area from river cobbles and then analyzed for chlorophyll-a and algal species. The laboratory analyses of the water and periphyton samples were performed using funds awarded to the Klamath Basin Tribal Water Quality Work Group by the U.S. EPA Region 9. In the report, sampling results are compared with the water quality standards from the Hoopa Tribe’s Water Quality Control Plan. Concentrations of most nitrogen, phosphorus, and carbon parameters were almost always higher at the Klamath River site than the Trinity River site. Exceedances of the Tribe’s nutrient criteria of 0.035 mg/L total phosphorus (TP) and 0.2 mg/L total nitrogen (TN) were common at the Klamath River site (67% and 60%, respectively) but rare at the Trinity River site (4% and 2%, respectively). | Water Quality, Hoopa Tribal Environmental Protection Agency’s (Hoopa TEPA), Klamath Basin Tribal Water Quality Work Group | |
2013 | Crystal Bowman, Grant Johnson, Chook Chook Hillman, Tammy Lightle, Karuk Tribe | Karuk Tribe Water Quality Assessment Report 2013 | Technical Report | Water Quality | 180102 | The Karuk Tribe is the second largest Tribe in California, with over 3,500 Tribal members currently enrolled. The Karuk Tribe is located along the middle Klamath River in northern California. Karuk Ancestral Territory covers over 90 miles of the mainstem Klamath River and numerous tributaries. The Klamath River system is central to the culture of the Karuk People, as it is a vital component of our religion, traditional ceremonies, and subsistence activities. Degraded water quality and quantity has resulted in massive fish kills, increased occurrences of toxic algae, and outbreaks of fish diseases. Impaired water quality conditions also apply extreme limitations and burdens to our cultural activities. The Karuk Tribe’s Department of Natural Resources has been monitoring daily water quality conditions in the Klamath River since January of 2000 and tributaries to the Klamath River since 1998. The Karuk Tribe has been collaboratively involved in maintaining water quality stations along the Klamath River and its tributaries with the United States Environmental Protection Agency (USEPA), the United States Geological Survey (USGS), the Yurok Tribe, Oregon State University and PacificCorps. | Karuk Tribe, Water Quality, Data Interpretation and Management, | ||
2013 | Matthew Hanington | Final 2012 Klamath River Continuous Water Quality Monitoring Summary Report | Technical Report | Monitoring Programs, Water Quality, Water Temperature | Klamath Basin | 180102 | This report summarizes the trends in water quality as measured by Yellow Springs Incorporated (YSI) 6600EDS multi-parameter datasondes on the Klamath and Trinity Rivers from May through November, 2011. The Yurok Tribe Environmental Program (YTEP) measured water quality at several monitoring sites from Weitchpec to the USGS gaging station at Blake’s Riffle at half-hour intervals starting in mid-May and ending in early November. This monitoring was performed in an effort to track both temporal and spatial patterns on the lower reaches of the Klamath River during the sampling period. This data was added to previous years’ water quality data as part of an endeavor to build a multi-year database on the Lower Klamath River. This summary is part of YTEP’s comprehensive program of monitoring and assessment of the chemical, physical, and biological integrity of the Klamath River and its tributaries in a scientific and defensible manner. Datasonde placement along the mainstem of the Klamath and Trinity Rivers and measured parameters were coordinated with the Karuk Tribe and PacifiCorp to expand our understanding of the water quality dynamics in the Klamath basin. | Yurok Tribe Environmental Program (YTEP), Water quality, | |
2013 | Matthew Hanington, Kathleen Torso, Yurok Tribe Environmental Program | 2012 Klamath River Nutrient Summary Report | Technical Report | Water Quality, Water Temperature | Klamath Basin | 180102 | This report summarizes the presence and concentration of commonly occurring nutrients and associated analytes on the Klamath and Trinity Rivers during the 2012 sampling season. The Yurok Tribe Environmental Program (YTEP) collected monthly water samples at several monitoring sites from Weitchpec to the Klamath River Estuary in mid-February through mid- April, moved to a bi-weekly interval starting in mid-May and ending in mid-October, followed by monthly sampling in November and December. This sampling was performed in an effort to track both temporal and spatial patterns on the lower reaches of the Klamath and Trinity Rivers during the sampling period. This data was added to previous years’ nutrient data as part of an endeavor to build a multi-year database on the Lower Klamath River. This nutrient summary is part of YTEP’s comprehensive program of monitoring and assessment of the chemical, physical, and biological integrity of the Klamath River and its tributaries in a scientific and defensible manner. Sample events were coordinated with the Karuk and Hoopa Tribes, PacifiCorp, and the Bureau of Reclamation to collect samples during the same day and with comparable methods to expand our understanding of the nutrient dynamics in the Klamath basin. | Klamath River Nutrients, Yurok Tribe Environmental Program (YTEP), | |
2014 | Shari K. Witmore | Seasonal growth, retention, and movement of juvenile coho salmon in natural and constructed habitats of mid-Klamath River | Academic Article | Salmon | Mid Klamath | 180102 | Juvenile coho salmon (Onchorynchus kisutch) in the Klamath River basin often move long distances when natal streams become inhospitable due to high summer temperatures and high winter flows. Therefore, non-natal rearing sites such as tributaries and off- channel ponds are potentially important to the survival of juvenile coho salmon. This study evaluated the potential benefit to juvenile coho salmon of different types of non-natal rearing habitats in the mid-Klamath watershed including tributaries, beaver-influenced ponds, and constructed off-channel ponds. These sites represent different types of seasonal refugia habitat. Juvenile coho salmon were PIT tagged and measured in ten study sites to evaluate their growth, retention within the habitats, and seasonal movement patterns. Growth rate of fish which reared year-round in the same site was greater in beaver-influenced sites than in other habitat types. Depth, water temperature, volume of habitat, and percent riparian cover were not correlated with growth rates of coho salmon rearing in those sites. However, because I found significant differences in growth rates of fish across individual sites, there may be other habitat characteristics not measured as part of this study that influence growth. Retention rate was positively correlated with average maximum depth; however the summer retention rate of juvenile salmon at the sites was not correlated with salmon growth at the sites. I observed three seasonal movement patterns of juvenile coho salmon: spring redistribution of fry; fall redistribution associated with initial high flows, and outmigration of smolts during the following spring. This exploratory study showed that not only do juvenile coho salmon in the mid-Klamath display several different migratory patterns; choosing different types of off-channel habitats to rear, but the growth and retention rates of those fish depend on complex and site specific characteristics rather than type of habitat. | Coho salmon, natural and constructed habitats, Mid-Klamath river | |
2014 | Tamara M. Wood, Heather A. Hendrixson, Douglas F. Markle, Charles S. Erdman, Summer M. Burdick, Craig M. Ellsworth | Simulation and Validation of Larval Sucker Dispersal and Retention through the Restored Williamson River Delta and Upper Klamath Lake System, Oregon | Technical Report | Habitat Restoration, Suckers | Upper Klamath | 18010203 | A hydrodynamic model with particle tracking was used to create individual-based simulations to describe larval fish dispersal through the restored Williamson River Delta and into Upper Klamath Lake, Oregon. The model was verified by converting particle ages to larval lengths and comparing these lengths to lengths of larvae in net catches. Correlations of simulated lengths with field data were moderate and suggested a species-specific difference in model performance. Particle trajectories through the delta were affected by wind speed and direction, lake elevation, and shoreline configuration. Once particles entered the lake, transport was a function of current speed and whether behavior enhanced transport (swimming aligned with currents) or countered transport through greater dispersal (faster random swimming). We tested sensitivity to swim speed (higher speeds led to greater dispersal and more retention), shoreline configuration (restoration increased retention relative to pre-restoration conditions), and lake elevation (retention was maximized at an intermediate elevation). The simulations also highlight additional biological questions, such as the extent to which spatially heterogeneous mortality or fish behavior and environmental cues could interact with wind-driven currents and contribute to patterns of dispersal. | Larval Sucker Dispersal, Williamson River Delta, Upper Klamath Lake, | |
2012 | Summer M. Burdick | Distribution and Condition of Larval and Juvenile Lost River and Shortnose Suckers in the Williamson River Delta Restoration Project and Upper Klamath Lake, Oregon: 2010 Annual Data Summary | Technical Report | Habitat Restoration, Suckers | Upper Klamath | 180102 | Federally endangered Lost River sucker (Deltistes luxatus) and shortnose sucker (Chasmistes brevirostris) were once abundant throughout their range but populations have declined. They were extirpated from several lakes in the 1920s and may no longer reproduce in other lakes. Poor recruitment to the adult spawning populations is one of several reasons cited for the decline and lack of recovery of these species and may be the consequence of high mortality during juvenile life stages. High larval and juvenile sucker mortality may be exacerbated by an insufficient quantity of suitable or high-quality rearing habitat. In addition, larval suckers may be swept downstream from suitable rearing areas in Upper Klamath Lake into Keno Reservoir, where they are assumed lost to Upper Klamath Lake populations. This report summarizes data collected in 2010 by the U.S. Geological Survey as a part of this monitoring effort and follows two annual reports on data collected in 2008 and 2009. Restoration modifications made to the Williamson River Delta appeared to provide additional suitable rearing habitat for endangered Lost River and shortnose suckers from 2008 to 2010 based on sucker catches. Mean larval sample density was greater for both species in the Williamson River Delta than adjacent lake habitats in all 3 years. In addition to larval suckers, at least three age classes of juvenile suckers were captured in the delta. The shallow Goose Bay Farms and Tulana Emergent were among the most used habitats by age-0 suckers in 2009. Both of these environments became inaccessible due to low water in 2010, however, and were not sampled after July 19, 2010. In contrast, age-1 sucker catches shifted from the shallow water (about 0.5–1.5 m deep) on the eastern side of the Williamson River Delta in May, to deeper water environments (greater than 2 m) by the end of June or early July in all 3 years. | Lost River sucker (Deltistes luxatus), Shortnose sucker (Chasmistes brevirostris) | |
2013 | Barbara A. Martin, David A. Hewitt, Craig M. Ellsworth | Effects of Chiloquin Dam on Spawning Distribution and Larval Emigration of Lost River, Shortnose, and Klamath Largescale Suckers in the Williamson and Sprague Rivers, Oregon | Technical Report | Dam Operations, Dam Removal, Monitoring Programs, Suckers | Williamson River, Middle Sprague, Sprague - Sycan | 180102 | Chiloquin Dam was constructed in 1914 on the Sprague River near the town of Chiloquin, Oregon. The dam was identified as a barrier that potentially inhibited or prevented the upstream spawning migrations and other movements of endangered Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) suckers, as well as other fish species. In 2002, the Bureau of Reclamation led a working group that examined several alternatives to improve fish passage at Chiloquin Dam. Ultimately it was decided that dam removal was the best alternative and the dam was removed in the summer of 2008. The U.S. Geological Survey | Suckers, Williamson River, Sprague River, Chiloquin Dam | |
2013 | Andrew P. Kinziger, Michael Hellmair, David G. Hankin, John Carlos Garza | Contemporary Population Structure in Klamath River Basin Chinook Salmon Revealed by Analysis of Microsatellite Genetic Data | Academic Article | Salmon | Klamath Basin | 180102 | Chinook Salmon Oncorhynchus tshawytscha exhibit substantial population genetic structure at multiple scales. Although geography is generally more important than life history, particularly migration and run timing, for describing genetic structure in Chinook Salmon, there are several exceptions to this general pattern, and hatchery supplementation has altered natural genetic structure in some areas. Given that genetic structure of Chinook Salmon is often basin-specific, we assessed genetic variation of 27 microsatellite loci in geographically and temporally distinct natural populations and hatchery stocks in the Klamath River basin, California. Multiple analyses support recognition of three major genetic lineages from separate geographic regions in the Klamath River basin: the lower basin, the Klamath River, and the Trinity River. The lower basin group was sharply distinct, but populations in the Klamath and Trinity river lineages were connected by processes that can be described by a one-dimensional, linear, stepping-stone model where gene exchange occurred primarily, but not exclusively, between adjacent populations. Genetic structure by migration timing was also evident, although divergences among populations that differed by migration timing only were fewer than those observed between geographic regions. Distinct run-timing ecotypes in the Klamath River basin thus appear to have evolved independently through a process of parallel evolution. Introgressive pressure from the | Chinook Salmon, Oncorhynchus tshawytscha, Microsatellite Genetic Data, Population Structure | |
2009 | ESSA Technologies Ltd. | Trinity River Restoration Program: Integrated Assessment Plan Version 1.0 – September 22, 2009 | Technical Report | Adaptive Management | Trinity River | 180102 | The IAP has been under preparation for the last two years and has undergone considerable revision in response to reviews of version 0.90 by the Science Advisory Board (SAB), TMC and TAMWG in 2006, extensive comments from Program partners in 2007, and a final SAB review (www.trrp.net/science/IAP.htm) of IAP version 0.98 in October 2008. Over this time period three workshops attended by SAB members and invited experts were held to refine various components of the IAP. As assessments are conducted and additional information is gained, the IAP must adapt to this improved understanding. Therefore the IAP is intended to be a “living document” that will evolve as we learn more about the Trinity River. The IAP proposes a sampling framework for conducting the major assessments across subsystems that are required at site, reach and system scales to fulfill the two purposes of the IAP (i.e., feedback to revise management actions; judging progress towards Program goals and subsystem objectives). The sampling framework proposed within the IAP should allow for comparable system-wide estimates generated using alternative approaches (e.g., census or sample). Ongoing assessments with scientifically established protocols will be maintained as long as they provide information at the appropriate scale and the sampling design is statistically sound. The proposed sampling framework allows assessments to fall into one of five different categories: 1) previously established valid protocols (census, sample, and model based); 2) census; 3) General Random Tessellation Stratified (GRTS) panel; 4) alternative sampling design (i.e., assessment requires a unique design); and 5) site-scale design (e.g., process-based study). The intent of this sampling framework is to provide an accepted base structure around which ongoing assessments and future RFPs can be developed and coordinated, and through which data can be combined across disciplines to elucidate cause-effect relations at a system scale. | Adaptive Management, Trinity River, Assessment Needs, Adaptive Environmental Assessment and Management (AEAM), Integrated Assessment Plan (IAP), | |
2014 | ESSA Technologies, J. Laurence, Limnotek, Risk Sciences International, Trent University, Trinity Consultants, Dr. John Laurence, | Kitimat Modernization Project Sulphur Dioxide Environmental Effects Monitoring Program Program Plan for 2013 to 2018. and Sulphur Dioxide Technical Assessment Report in Support of the 2013 Application to Amend the P2-00001 Multimedia Permit Kitimat Modernization Project Volume 2: Technical Report | Technical Report | Adaptive Management | This document describes the modeling and monitoring that is planned for the next six years (2013 to 2018) under the sulphur dioxide (SO2) Environmental Effects Monitoring Program for the Kitimat Modernization Project, and thresholds for increased monitoring or mitigation if warranted based on the monitoring results. Rio Tinto Alcan will implement SO2 mitigation strategies if the outcomes of monitoring and modeling described in this plan show adverse impacts causally related to SO2 that are considered to be unacceptable. The EEM Program is specific to SO2 emissions from KMP. Non-SO2 KMP emissions, emissions and impacts from other facilities, and research and development of new indicators or monitoring methods are all outside of the scope of the EEM Program. The plan distinguishes two types of indicators: key performance indicators (KPIs) which will have quantitative thresholds for increased monitoring or for mitigation, and informative indicators which will provide evidence in support of key performance indicators. | Adaptive Management, Sulphur Dioxide (SO2) Environmental Effects Monitoring Program, Indicators and Thresholds, Atmospheric pathways, Human Health, Mitigation, | |||
2007 | David R. Marmorek, Marc Porter, Darcy Pickard, Katherine Wieckowski, ESSA Technologies Ltd. | Collaborative Systemwide Monitoring and Evaluation Project (CSMEP) Project No. 2003-036-00 Snake River Basin Pilot Report Volume 1 and Volume 2 | Technical Report | Adaptive Management, Habitat Restoration, Hatcheries, Hydrology, Monitoring Programs, Salmon, Steelhead/Rainbow Trout | United States | The Collaborative Systemwide Monitoring and Evaluation Project (CSMEP) was created for the shared, multi-agency development of a regional monitoring and evaluation (M&E) program for fish populations. It is a bottom-up effort to build consensus to ensure technically and consistently sound programmatic decisions on M&E. Specific goals for CSMEP are to: 1) document, integrate, and make available existing monitoring data on listed salmon, steelhead and other fish species of concern, 2) critically assess strengths and weaknesses of these data for answering high priority monitoring questions, and 3) collaboratively design and help agencies implement improved monitoring and evaluation methods related to key decisions in the Columbia Basin. Regional M&E for fish populations should be developed through a long-term, systematic process that involves dialogue with Columbia River Basin fish managers and decision makers to identify the key management decisions, spatial and temporal scales of decisions, information needs, time frame for actions, and the level of acceptable risks when making the decisions. It should be recognized that monitoring and evaluation are absolutely critical to the region’s adaptive management cycle. Decisions on regional M&E designs need to be based on a quantitative evaluation of the costs and benefits of the Status Quo and alternative designs to answer management questions. It will likely be much more cost-effective to build on the strengths of the region’s existing monitoring infrastructure, rather than applying a uniform “cookie-cutter” approach throughout the Columbia River Basin. Each region in the Columbia River Basin has invested considerable resources to develop a monitoring infrastructure that is primarily adapted to address local needs. Improved designs that can overcome weakness in the existing M&E programs should allow assessments at larger spatial and longer temporal scales. | Adaptive Management, Snake River Basin, Habitat, Hatcheries, Integrated Monitoring, | ||
1999 | David Marmorek, Ian Parnell, Calvin N. Peters, Clint Alexander, ESSA Technologies Ltd. | PATH Scoping of Candidate Research, Monitoring and Experimental Management Actions: Concurrently Reducing Key Uncertainties and Recovering Stocks Working Draft | Technical Report | Adaptive Management, Climate Change Effects, Dam Operations, Hatcheries, Monitoring Programs, Salmon, Steelhead/Rainbow Trout | United States | One of PATH’s original objectives is to assess the ability to distinguish among competing hypotheses from future information, and advise institutions on adaptive management experiments, monitoring, and research that would maximize learning. In the PATH Final Report for Fiscal Year 1998, we set out a plan for addressing this objective (Table ES-1). Following consultation with the Implementation Team (I.T.) early in 1999, PATH established an Experimental Management Workgroup to more clearly define experimental management and generate a list of potential experimental management actions (i.e., the first three tasks in Table ES-1). This report summarizes the progress on these tasks by the experimental management workgroup. The purpose of this report was to solicit feedback from the I.T., NWPPC, and other regional managers on the PATH experimental management work completed thus far. Specifically, we ask the following questions: Clearly there is more work to do, particularly in terms of developing overall strategies, building quantitative assessment tools, and completing the analyses of the relative risks and benefits of alternative experimental actions (i.e., Tasks 4-7 in Table ES-1). However, this report is only the first round of creative exploration of experimental actions. The immediate next step is to narrow the list of potential experimental actions further before proceeding with further quantitative assessments. | PATH, Adaptive management, Lower Columbia River, Lower Snake River, | ||
2016 | J. Craig Fischenich, Kate E. Buenau, Joseph L. Bonneau, Craig A. Fleming, David R. Marmorek, Marc A. Nelitz, Carol L. Murray, Brian O. Ma, Graham Long, Carl J. Schwarz, US Army Corps of Engineers Engineer Research and Development Center (ERDC), ESSA, | Draft Version 6 Science and Adaptive Management Plan Missouri River Recovery Program | Technical Report | Adaptive Management | United States | The Missouri River Recovery Program (MRRP) is undergoing a transformation resulting from 2011 recommendations by an Independent Science Advisory Panel and the Missouri River Recovery Implementation Committee (MRRIC). An Effects Analysis study established the best available scientific information and provided the foundation for an Adaptive Management Plan (AM Plan) that addresses lingering uncertainties and improves management decisions while implementing actions that avoid jeopardizing the three federally listed species in the system. This draft AM Plan includes a process for resolving critical uncertainties using a framework consisting of four implementation levels: 1) research, 2) in-river testing of hypotheses, 3) scaled implementation of select management actions, and 4) full implementation. The decision criteria for moving to higher levels of implementation are included. A NEPA evaluation of alternative management actions identified an initial suite of actions 12 that will be implemented to meet the objectives of the MRRP. This Draft AM Plan accompanies the Draft Missouri River Recovery Management Plan-Environmental Impact Statement and provides the roadmap for the implementation of the selected alternative and for the identification of subsequent management needs should the initial suite of actions fail to meet objectives. The AM Plan will be implemented collaboratively by the U.S. Army Corps of Engineers, the U.S. Fish and Wildlife Service, and MRRIC following the governance process outlined in the AM Plan. | Missouri River Recovery Program (MRRP), Adaptive Management Plan, Governance, Plovers, Terns, Pallid Sturgeon, Data acquisition, Monitoring, Implementation, Evaluation, Human Considerations | ||
2011 | Carol Murray, Chad Smith, Dave Marmorek, Dr. David Baasch, Dr. Bridget Barron, Jason Farnsworth, Dr. David Galat, Lorne Greig, Alex Hall, Darcy Pickard, ESSA Technologies Ltd, Headwaters Corporation, University of Missouri | Middle Rio Grande Endangered Species Collaborative Program. Adaptive Management Plan Version 1 | Technical Report | Adaptive Management, Monitoring Programs, Other threatened fishes | United States | The Middle Rio Grande Endangered Species Collaborative Program (Program) is a partnership for the purposes of protecting and improving the status of endangered species in the Middle Rio Grande (MRG) of New Mexico while simultaneously protecting existing and future regional water uses. Two species of particular concern are the Rio Grande silvery minnow (Hybognathus amarus) (silvery minnow) and Southwestern Willow Flycatcher (Empidonax traillii extimus) (flycatcher), both of which are Federally Endangered. This is Version 1 of the first Adaptive Management (AM) Plan for the Program. It provides a framework for conducting Program activities to deliberately and explicitly reduce management uncertainties. Based on an assessment of the building blocks for AM in Section 1, it identifies a preliminary example AM design in Section 2 and takes this example through the remaining steps in the AM cycle. A more prescriptive Version 2 will take more time to develop, and a process featuring both policy/management and technical roles is recommended for the Program to move to Version 2. It involves a systematic simulation and evaluation of alternative sets of actions, exploring what will best meet the Program‟s goals and concurrently reduce critical management uncertainties under a wide range of possible future conditions. The result would be an accepted and scientifically defensible AM design to be implemented, monitored and evaluated. It also suggests that an AM pilot be considered in the near term, to be done in parallel with the process of developing Version 2. | Middle Rio Grande Endangered Species Collaborative Program, Rio Grande silvery minnow (Hybognathus amarus) (silvery minnow), Southwestern Willow Flycatcher (Empidonax traillii extimus) (flycatcher), Endangered Species | ||
2014 | Marc Porter, David Marmorek, Darcy Pickard, Katherine Wieckowski, ESSA Technologies Ltd. | Dry Creek Adaptive Management Plan (AMP) Final | Technical Report | Adaptive Management, Habitat Restoration, Salmon, Steelhead/Rainbow Trout, Water Quality, Water Temperature | United States | The Russian River Biological Opinion (RRBIOP, NMFS 2008) identifies the operation of Warm Springs Dam as adversely modifying critical habitat in Dry Creek and jeopardizing coho salmon (endangered) and steelhead (threatened). To alleviate these impacts, the RRBIOP compels the Sonoma County Water Agency (Water Agency) and the United States Army Corps of Engineers (USACE) to implement projects along up to six miles of mainstem Dry Creek. Projects will be designed and implemented with the objective of addressing the lack of low water velocity areas with adequate cover and appropriate water depth that limit habitat suitability for juvenile salmonids in general and juvenile coho salmon in particular. Multiple habitat enhancement projects over the 14 mile length will occur in phases during the 15 year time-period covered by the RRBIOP. A question raised by the RRBIOP is whether Dry Creek habitat enhancements will have the desired benefits. This question is important both for receiving credit toward the total amount of habitat enhancements set forth in the RRBIOP (six miles) and for assessing the relative effectiveness of various habitat enhancements options. For the latter reason, the RRBIOP states that “an adaptive management, monitoring and evaluation plan” will be developed that identifies “project goals, objectives and success criteria”. ESSA Technologies Ltd. (an independent consulting firm from Vancouver Canada) facilitated the collaborative development of an adaptive management plan (AMP) for Dry Creek in an iterative process of meetings, discussions and document revision. This document captures the outcomes of that process. The goal of the Dry Creek AMP is to serve as a guide for monitoring juvenile coho and steelhead populations and the habitats they live in over multiple years to detect change resulting from habitat enhancement. | Dry Creek, Adaptive Management, Coho Salmon, Steelhead, Water Quality | ||
2006 | Clint A.D. Alexander, Calvin N. Peters, David R. Marmorek, Paul Higgins | A decision analysis of flow management experiments for Columbia River mountain whitefish (Prosopium williamsoni) management | Academic Article, Technical Report | Adaptive Management | High spawning flows from Hugh Keenleyside Dam (HKD) on the Columbia River results in dewatering of eggs in mountain whitefish (Prosopium williamsoni) populations, but the ultimate effect on adult abundance depends on the shape of the egg-to-adult recruitment curve. Our decision analysis assessed the benefits of alternative flow experiments while accounting for uncertainties in this relationship and in flows in the Columbia and Kootenay rivers. The value of experimenting depended on the true recruitment relationship, how we quantified experimental benefits, and experimental design. With current uncertainty, the optimal HKD spawning flow (out of 11 alternative flows) was 1699.2 m3·s–1. Spawning flows below 1699.2 m3·s–1 did not improve egg survival because lower flows rendered highquality spawning habitat unavailable and increased scour mortality. Two experimental designs, both with higher precision monitoring, had a high probability of detecting the true recruitment curve at reasonable cost. Information from these experiments suggested an optimal spawning flow of 1699.2 m3·s–1 if adult abundance were sensitive to egg mortality or 1982.4 m3·s–1 if the population were insensitive. | Columbia River, mountain whitefish, Prosopium williamsoni, British Columbia, Simulated adaptive management, | |||
2012 | Cynthia Thomson | Klamath Tribes Fishery Socioeconomics Technical Report. For the Secretarial Determination on Whether to Remove Four Dams on the Klamath River in California and Oregon | Technical Report | Dam Operations, Dam Removal, Salmon, Steelhead/Rainbow Trout, Suckers | Klamath Basin | 180102 | In accordance with the terms of the Klamath Hydroelectric Settlement Agreement and contingent on Congressional authorization, the Secretary of the Interior will make a determination regarding whether removal of four Klamath River dams (Iron Gate, Copco 1, Copco 2 and J.C. Boyle) owned by the utility company PacifiCorp advances restoration of salmonid fisheries and is in the public interest. This report analyzes the effects of three alternatives that will be considered by the Secretary as they pertain to fishing opportunities for the Klamath Tribes. For the Klamath Tribes, the action alternatives are expected to create salmonid harvest opportunities that have been lost for almost a century, allow for eventual subsistence harvest of suckers (which has been lost for 25 years), increase self-sufficiency and self-determination through acquisition of ancestral lands (Mazama Forest), expand engagement in resource monitoring and management, enhance cultural values and practices and their transmission to the next generation, generate jobs and income, and provide greater opportunity for healthy food consumption. | Dam removal, Effects of Alternatives, SONCC, Spring Chinook, Fall Chinook, Steelhead, Pacific Lamprey, Suckers, Redband Trout, | |
2012 | Steven A. Stenhouse, Caitlin E. Bean, William R. Chesney, Mark S. Pisano | Water Temperature Thresholds for Coho Salmon in a Spring-fed river, Siskiyou County, California | Technical Report | Adaptive Management, Habitat Restoration, Monitoring Programs, Salmon, Water Temperature | Klamath Basin | 180102 | Coho salmon (Oncorhynchus kisutch) populations in California have declined at an alarming rate in the last 40 to 50 years. Detrimental water temperatures in the Shasta River have contributed to this decline. At one time, the Shasta River was a cool water stream with flows dominated by springs originating from underground flow from Mt. Shasta and snowmelt from the Eddy Mountains. Agricultural practices and water diversions have eliminated much of the historic high-quality aquatic habitat, and only remnants of the once abundant cool water habitat exist. Cool water temperatures are critical for the freshwater phase of the coho salmon life cycle, and are imperative for population recovery. Based on a literature review of the effects of physiology, behavior, and survival of coho salmon, we break water temperatures into optimal, suboptimal, and detrimental ranges. Identifying water temperature thresholds for coho salmon will support the implementation of monitoring stations and adaptive management practices to assure that suboptimal temperature thresholds are not exceeded. It is well documented that the establishment and use of locally determined thresholds as performance criteria in the monitoring and adaptive management of ecosystems is critical to conducting restoration activities. We conclude that protecting the cool water produced by springs located in the upper Shasta River springs complex will improve the likelihood of coho salmon persistence in this watershed and contribute to coho salmon recovery. | California, cold water springs, Coho Salmon, Oncorhychus Kisutch, Rearing habitat, Recovery, Temperature, Thresholds, Shasta River, Siskiyou County | |
2017 | Roger J. Peters, Martin Liermann, Michael L. McHenry, Paul Bakke, George R. Pess | Changes in Streambed Composition in Salmonid Spawning Habitat of the Elwha River during Dam Removal | Technical Report | Dam Removal, Habitat Restoration, Salmon, Sediment & Geomorphology | United States | One uncertainty associated with large dam removal is the level of downstream sediment deposition and associated short-term biological effects, particularly on salmonid spawning habitat. Recent studies report downstream sediment deposition following dam removal is influenced by proximity to the source and river transport capacity. The impacts of dam removal sediment releases are difficult to generalize due to the relatively small number of dam removals completed, the variation in release strategies, and the physical nature of systems. Changes to sediment deposition and associated streambed composition in the Elwha River, Washington State, were monitored prior to (2010-2011) and during (2012-2014) the simultaneous removal of two large dams (32 and 64 m). Changes in the surface layer substrate composition during dam removal varied by year and channel type. Riffles in floodplain channels downstream of the dams fined and remained sand dominated throughout the study period, and exceeded levels known to be detrimental to incubating salmonids. Mainstem riffles tended to fine to gravel, but appear to be trending toward cobble after the majority of the sediment was released and transported through system. Thus, salmonid spawning habitats in the mainstem appear to have been minimally impacted while those in floodplain channels appear to have been severely impacted during dam removal. | sediment, sediment transport, sediment composition, restoration, environmental impacts | ||
1997 | Russell F. Thurow , Danny C. Lee, Bruce E. Rieman | Distribution and Status of Seven Native Salmonids in the Interior Columbia River Basin and Portions of the Klamath River and Great Basins | Technical Report | Salmon | Klamath Basin | 180102 | We summarized presence, absence, current status, and potential historical distribution of seven native salmonid taxa—bull trout Salvelinus conjluentus, Yellowstone cutthroat trout Oncorhyncus clarki bouvieri. westslope cutthroat trout O. c. lewisi, redband trout and steelhead ,stream type (age-1 migrant) chinook salmon and ocean type (age-0 migrant) chinook salmon—in the interior Columbia River basin and portions of the Klamath River and Great basins. Potential historical range was defined as the likely distribution in the study area prior to European settlement. Data were compiled from existing sources and surveys completed by more than 150 biologists. Within the potential range of polamodromous salmonids, status was unknown in 38-69% of the area, and the distribution of anadromous salmonids was unknown in 12-l5%. We developed models to quantitatively explore relationships among fish status and distribution, the biophysical environment, and land management, and used the models to predict the presence of taxa in unsampled areas. The composition, distribution, and status of fishes within the study area is very different than it was historically. Although several of the salmonid taxa are distributed throughout most of their potential range, declines in abundance and distribution and fragmentation into smaller patches are apparent for all forms. None of the salmonid taxa have known or predicted strong populations in more than 22% of their potential ranges, with the exception of Yellowstone cutthroat trout. Both forms of chinook salmon are absent from more than 70% and steelhead from more than 50% of their potential ranges, and all are approaching extirpation in portions of their remaining ranges. | Bull Trout, Salvelinus confluentus, | |
2009 | E. A. Mora, S. T. Lindley, D. L. Erickson, A. P. Klimley | Do impassable dams and flow regulation constrain the distribution of green sturgeon in the Sacramento River, California? | Technical Report | Dam Operations, In-Stream Flow / Flow Regime, Other threatened fishes | United States | Conservation of the threatened green sturgeon Acipenser medirostris in the Sacramento River of California is impeded by lack of information on its historical distribution and an understanding of how impassable dams and altered hydrographs are influencing its distribution. The habitat preferences of green sturgeon are characterized in terms of river discharge, velocity, channel gradient, and air temperature associated with | Green sturgeon, Acipenser medirostris, Conservation, | ||
2011 | Timothy D. Mayer, Seth W. Naman | Streamflow response to Climate as Influenced by Geology and Elevation | Technical Report | Climate Change Effects, In-Stream Flow / Flow Regime | Klamath Basin | 180102 | This study examines the regional streamflow response in 25 predominately unregulated basins to warmer winter temperatures and snowpack reductions over the last half century in the Klamath Basin of California and Oregon. Geologic controls of streamflow in the region result in two general stream types: surfacedominated and groundwater-dominated basins. Surface-dominated basins were further differentiated into rain basins and snowmelt basins on the basis of elevation and timing of winter runoff. Streamflow characteristics and response to climate vary with stream type, as discussed in the study. Warmer winter temperatures and snowpack reductions have caused significantly earlier runoff peaks in both snowmelt and groundwater basins in the region. In the groundwater basins, the streamflow response to changes in snowpack is smoothed and delayed and the effects are extended longer in the summer. Our results indicate that absolute decreases in July-September base flows are significantly greater, by an order of magnitude, in groundwater basins compared to surface dominated basins. The declines are important because groundwater basins sustain Upper Klamath Lake inflows and mainstem river flows during the typically dry summers of the area. Upper Klamath Lake April September net inflows have decreased an estimated 16% or 84 thousand acre-feet (103.6 Mm3) since 1961, with the summer months showing proportionately more decline. These changes will exacerbate water supply problems for agriculture and natural resources in the region. | Climate Change ⁄ variability, Klamath Basin, Groundwater hydrology, Surface water / Groundwater interactions, Base-flow index, Upper Klamath Lake | |
2015 | Klimley, A. Peter, Chapman, Eric D., Cech, Jr., Joseph J., Cocherell, Dennis E., Fangue, Nann A., Gingras, Marty, Jackson, Zachary, Miller, Emily A., Mora, Ethan A., Poletto, Jamilynn B., Schreier, Andrea M., Seesholtz, Alicia, Sulak, Kenneth J., Thomas, Michael J., U Woodbury, David, Wyman, Megan T., | Sturgeon in the Sacramento–San Joaquin Watershed: New Insights to Support Conservation and Management | Conference Proceeding | Other threatened fishes | United States | The goal of a day-long symposium on March 3, 2015, Sturgeon in the Sacramento–San Joaquin Watershed: New Insights to Support Conservation and Management, was to present new information about the physiology, behavior, and ecology of the green (Acipenser medirostris) and white sturgeon (Acipenser transmontanus) to help guide enhanced management and conservation efforts within the Sacramento–San Joaquin watershed. This symposium identified current unknowns and highlighted new electronic tracking technologies and physiological techniques to address these knowledge gaps. A number of presentations, each reviewing ongoing research on the two species, was followed by a round-table discussion, in which each of the participants was asked to share recom-mendations for future research on sturgeon in the watershed. This article presents an in-depth review of the scientific information presented at the symposium with a summary of recommendations for future research. | Green sturgeon, Acipenser medirostris, White sturgeon, Acipenser transmontanus, Conservation biology | ||
2012 | David A. Hewitt, Eric C. Janney, Brian S. Hayes, Alta C. Harris | Demographics and Run Timing of Adult Lost River (Deltistes luxatus) and Shortnose (Chasmistes brevirostris) Suckers in Upper Klamath Lake, Oregon, 2011 | Technical Report | Suckers, Upper Klamath | Upper Klamath | 18010206 | Data from a long-term capture-recapture program were used to assess the status and dynamics of populations of two long-lived, federally endangered catostomids in Upper Klamath Lake, Oregon. Lost River suckers (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) have been captured and tagged with passive integrated transponder (PIT) tags during their spawning migrations in each year since 1995. In addition, beginning in 2005, individuals that had been previously PIT-tagged were re-encountered on remote underwater antennas deployed throughout sucker spawning areas. Captures and remote encounters during spring 2011 were used to describe the spawning migrations in that year and also were incorporated into capture-recapture analyses of population dynamics. Despite relatively high survival in most years, both species have experienced substantial declines in the abundance of spawning fish because losses from mortality have not been balanced by recruitment of new individuals. Although capture-recapture data indicate substantial recruitment of new individuals into the adult spawning populations for SNS and river spawning LRS in some years, size data do not corroborate these estimates. In fact, fork length data indicate that all populations are largely comprised of fish that were present in the late 1990s and early 2000s. As a result, the status of the endangered sucker populations in Upper Klamath Lake remains worrisome, and the situation is most dire for shortnose suckers. Future investigations should explore the connections between sucker recruitment and survival and various environmental factors, such as water quality and disease. Our monitoring program provides a robust platform for estimating vital population parameters, evaluating the status of the populations, and assessing the effectiveness of conservation and recovery efforts. | Lost River suckers, Deltistes luxatus, Shortnose suckers, Chasmistes brevirostris | |
2006 | Gathard Engineering Consulting | Klamath River Dam and Sediment Investigation | Technical Report | Dam Operations, Dam Removal, Sediment & Geomorphology | Klamath Basin | 180102 | The State Coastal Conservancy (Conservancy) and the Ocean Protection Council (OPC), two agencies of the State of California, initiated this study to characterize sediment behind four dams of the Klamath River Hydroelectric Project on the Klamath River, and examine the possibility of dam removal. This study investigates removal of the four most downstream dams: Iron Gate, Copco 2, Copco 1 and J.C. Boyle. The Klamath River is located in northern California and southern Oregon on the Pacific coast of the United States. The Klamath River Hydroelectric Project, owned by PacifiCorp, consists of six generating developments along the mainstem of the Upper Klamath River. The project also includes a re-regulation dam with no generation facilities, and one generating development on Fall Creek, a tributary to the Klamath River. The Klamath River Project is now undergoing relicensing proceedings before the Federal Energy Regulatory Commission (FERC). Separate from the formal FERC relicensing process, a Settlement Group has explored future project management alternatives, and its Dam Removal Subgroup has investigated dam removal as a project management alternative. Previous dam removal studies have suggested that downstream erosion of sediment to the marine environment would be a feasible approach to dam removal and sediment management, but this conclusion was limited by the lack of information characterizing sediment quantity, quality, and management options. Therefore, the Subgroup asked the Conservancy to conduct a detailed reservoir sediment study and dam removal investigation. The Conservancy entered into contracts with Gathard Engineering Consulting (GEC) and Shannon and Wilson, Inc., (S&W) to characterize sediment located behind the four lowermost dams, and to conduct preliminary dam removal studies. | Sediment, | |
1983 | P. Futer, M. Nassichuk | Metals in Eulachons from the Nass River and Crabs from Alice Arm, B.C. | Technical Report | Contaminants, Other threatened fishes | In 1981, Amax Molybdenum of Canada Ltd. began discharging tailings from its molybdenum mine at Kitsault, British Columbia into Alice Arm. Native Indians living in coastal areas of Northern B.C. expressed concern with respect to the potential for metal contamination of certain food f ish and invertebrates as a result of the tailings disposal. In response to this concern, the Department of Fisheries and Oceans carried out a sampling program in 1981 and 1982 to determine the metal content of Nass River eulachons (Thaleichthys pacificus) and small numbers of King crab (Paralithodes camtschatica) and Tanner crab (Chionoecetes bairdl) from Alice Arm. Levels of arsenic, cadmium, chromium, copper, manganese, mercury, molybdenum, nickel, lead and zinc were measured in organisms sampled. This report presents results of the sampling program and compares them with metal data from organisms previously collected from coastal waters of British Columbia and other selected coastal locations throughout the world. | Eulachons, Metals | |||
2009 | Charles S. Erdman, Heather A. Hendrixson | Larval Shortnose and Lost River Sucker Response to Large Scale Wetland Restoration of the North Half of the Williamson River Delta Preserve, Oregon | Technical Report | Habitat Restoration, Suckers | Williamson River | 18010201 | Hydrologic reconnection of deltaic wetlands at the mouth of the Williamson River with portions of Agency Lake and Upper Klamath Lake, Oregon is a restoration strategy aimed at increasing the amount of nursery habitat available for larval Lost River suckers Deltistes luxatus and shortnose suckers Chasmistes brevirostris. We examined the response of larval suckers to this large scale wetland restoration project at the Williamson River Delta by assessing discrepancies in catch rates, habitat preferences, and fish condition (size and gut fullness) at restored and existing lakeshore fringe wetlands. Differences in habitat associations existed between the two wetland types, as larval suckers preferred shallow, vegetated areas in the restored areas of the Williamson River Delta while in existing wetlands deep, non vegetated areas were occupied more frequently. Mean larval sucker length and gut fullness in the restored areas were on average greater than means in existing wetlands, a strong indication that larvae were rearing in the restored wetlands of the Williamson River Delta. Our monitoring suggests that wetland restoration efforts at the Williamson River Delta may contribute to the recovery of these two endangered species through the increase of larval nursery habitat. | Lost River suckers, Deltistes luxatus, Shortnose suckers, Chasmistes brevirostris | |
1998 | Robert M. Durborow, Andrew J. Mitchell, M. David Crosby | Ich (White Spot Disease) | Technical Report | Miscellaneous, Water Temperature | United States | Ich is a common name for the parasite Ichthyophthirius multifiliis and the disease that it causes. The parasite is capable of killing large numbers of fish in a short period of time. Early diagnosis and treatment are essential for controlling Ich and reducing fish losses. Prevention of this disease is, of course, the best method of avoiding fish mortalities. | Ich, Ichthyophthirius multifiliis, Prevention, Treatment, | ||
2000 | Michael Cooperman, Douglas F. Markle | Ecology of Upper Klamath Lake Shortnose and Lost River Suckers 2. Larval Ecology of Shortnose and Lost River suckers in the lower Williamson River and Upper Klamath Lake | Technical Report | Suckers | Upper Klamath | 18010206 | The larval life history stage of Klamath Basin suckers has received relatively little study. However, the early life history stages of endangered shortnose and Lost River suckers are targets for much of the restoration activity in the basin, including the restoration of the lower Williamson River delta at Tulana Farms. This study is part of doctoral dissertation work begun in 1998. Primary questions being evaluated are: I ) whether significant early life history events take place in the Williamson River; 2) whether habitat selection changes with age or location; 3) whether feeding habits change with age or location; 4) whether community structure influences larval sucker survival; and 5) whether differences exist between Lost River and shortnose sucker early life histories. Sampling in 1998 was partly exploratory and was used to guide subsequent sampling in 1999. This report is based on the 1998 sampling but includes preliminary comments on aspects of the 1999 data. | Lake Shortnose Suckers, Lost River Suckers, Larval Ecology | |
2007 | Kurtis Brown | Evidence of spawning by green sturgeon, Acipenser medirostris, in the upper Sacramento River, California | Technical Report | Other threatened fishes | United States | This study reports the only direct evidence of spawning of green sturgeon, Acipenser medirostris, in the upper Sacramento River, CA. Two green sturgeon eggs were collected with substrate mats immediately below Red Bluff Diversion Dam. One green sturgeon larva was collected with a larval net at Bend Bridge. We concluded that green sturgeon spawn in the upper Sacramento River, both above and below RBDD. Temperature ranges in the study area (10–15C) are similar to conditions used in successful artificial rearing of green sturgeon and do not appear to be a limiting factor to successful spawning of green sturgeon; however, suitable habitat upstream of RBDD is inaccessible when dam gates are lowered. | Green Sturgeon, Acipenser medirostris, Artificial substrates, Larval nets, Rotary-screw traps, Migration, Red Bluff Diversion Dam | ||
2010 | Mark R. Terwilliger, Tamal Reece, Douglas F. Markle | Historic and recent age structure and growth of endangered Lost River and shortnose suckers in Upper Klamath Lake, Oregon | Technical Report | Suckers | Lost River, Upper Klamath | 18010206 | Seventy-four lapilli from Lost River suckers captured in Upper Klamath Lake in 1970 during a snag fishery on spawning adults and 192 lapilli from adults sacrificed from 2001–2006 were examined to | Age, Growth, Upper Klamath Lake, Lost River Sucker, Shortnose sucker | |
2015 | David A. Hewitt, Eric C. Janney, Brian S. Hayes, Alta C. Harris | Status and Trends of Adult Lost River (Deltistes luxatus) and Shortnose (Chasmistes brevirostris) Sucker Populations in Upper Klamath Lake, Oregon, 2014 | Technical Report | Suckers | Upper Klamath | 18010206 | Data from a long-term capture-recapture program were used to assess the status and dynamics of populations of two long-lived, federally endangered catostomids in Upper Klamath Lake, Oregon. Lost River suckers (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) have been captured and tagged with passive integrated transponder (PIT) tags during their spawning migrations in each year since 1995. In addition, beginning in 2005, individuals that had been previously PIT-tagged were re-encountered on remote underwater antennas deployed throughout sucker spawning areas. Captures and remote encounters during the spawning season in spring 2014 were incorporated into capture-recapture analyses of population dynamics. Cormack-Jolly-Seber (CJS) open population capture-recapture models were used to estimate annual survival probabilities, and a reverse-time analog of the CJS model was used to estimate recruitment of new individuals into the spawning populations. In addition, data on the size composition of captured fish were examined to provide corroborating evidence of recruitment. Model estimates of survival and recruitment were used to derive estimates of changes in population size over time and to determine the status of the populations through 2013. Separate analyses were conducted for each species and also for each subpopulation of Lost River suckers (LRS). Shortnose suckers (SNS) and one subpopulation of LRS migrate into tributary rivers to spawn, whereas the other LRS subpopulation spawns at groundwater upwelling areas along the eastern shoreline of the lake. | Lost River Sucker, Deltistes luxatus, Shortnose Sucker, Chasmistes brevirostris, Population Status and Trends | |
2016 | Danielle M. Hereford, Carl O. Ostberg, Summer M. Burdick | Predation on Larval Suckers in the Williamson River Delta Revealed by Molecular Genetic Assays—A Pilot Study | Technical Report | Suckers | Williamson River | 18010201 | Predation of endangered Lost River suckers (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) during larval egress to Upper Klamath Lake from the Williamson River is poorly understood but may be an important factor limiting recruitment into adult spawning populations. Native and non-native piscivores are abundant in nursery wetland habitat, but larval predation has not been directly studied for all species. Larvae lack hard body structures and digest rapidly in predator digestive systems. Therefore, traditional visual methods for diet analysis may fail to identify the extent of predation on larvae. The goals of this study were to (1) use quantitative polymerase chain reaction (qPCR) and single nucleotide polymorphism (SNP) assays developed for Lost River and shortnose suckers to assay predator stomach contents for sucker DNA, and (2) to assess our ability to use this technique to study predation. Predators were captured opportunistically during larval sucker egress. Concurrent feeding trials indicate that most predators—yellow perch (Perca flaverscens), fathead minnow (Pimephales promelas), blue chub (Gila coerulea), Klamath tui chub (Siphatales bicolor bicolor), Klamath Lake sculpin (Cottus princeps), slender sculpin (Cottus tenuis)—preyed on sucker larvae in the laboratory. However, sucker DNA was not detected in fathead minnow stomachs. Of the stomachs screened from fish captured in the Williamson River Delta, 15.6 percent of yellow perch contained sucker DNA. This study has demonstrated that the application of qPCR and SNP assays is effective for studying predation on larval suckers. We suggest that techniques associated with dissection or detection of sucker DNA from fathead minnow stomachs need improvement. | Predation, Larval Suckers, | |
2016 | Julie Day, Ron Barnes, Kirk Groves, Darrick Weissenfluh, | Klamath Falls Sucker Assisted Rearing Program 2016 Update | Conference Proceeding | Suckers | Upper Klamath | 18010206 | The goal of U.S Fish and Wildlife Service’s (USFWS) Sucker Assist Rearing Program (SARP) is to rear 8,000-10,000 age-0 Lost River and shortnose suckers to >200 mm for reintroduction into the Upper Klamath Lake (UKL) system. USFWS employees, with help from Bureau of Reclamation (Reclamation) and The Klamath Tribes (TKT), successfully collected an estimated 4,300 larvae from the Williamson River in 2016 and transported them to Gone Fishing. SARP had an estimated 70% survival rate from collection to ponding. Expansion in 2016 will double the current rearing capacity and allow SARP to rear the target number of suckers in low densities as well as investigate experimental salvage fish health treatment efficacy and more specific rearing questions. It will also allow us to hold fish in discrete cohorts throughout their captivity in an effort to differentiate spawning yields among the UKL sucker species. | Sucker Assist Rearing Program, SARP | |
2016 | Summer M. Burdick, Carl O. Ostberg, Mark E. Hereford, Marshal S. Hoy | Juvenile Sucker Cohort Tracking Data Summary and Assessment of Monitoring Program, 2015 | Technical Report | Suckers | 18010206 | Populations of federally endangered Lost River (Deltistes luxatus) and shortnose suckers (Chasmistes brevirostris) in Upper Klamath Lake, Oregon, are experiencing long-term declines in abundance. Upper Klamath Lake populations are decreasing because adult mortality, which is relatively low, is not being balanced by recruitment of young adult suckers into known adult spawning aggregations. Previous sampling for juvenile suckers indicated that most juvenile sucker mortality in Upper Klamath Lake likely occurs within the first year of life. The importance of juvenile sucker mortality to the dynamics of Clear Lake Reservoir populations is less clear, and factors other than juvenile mortality (such as access to spawning habitat) play a substantial role. For example, production of age-0 juvenile suckers, as determined by fin ray annuli and fin development, has not been detected since 2013 in Clear Lake Reservoir, whereas it is detected annually in Upper Klamath Lake. We initiated a long-term juvenile sucker monitoring program in 2015 designed to track cohorts through seasons and among years in both Upper Klamath Lake and Clear Lake Reservoir. Specifically, our goals are to track annual variability in age-0 sucker production, juvenile sucker survival, growth, and condition. In this first year of the monitoring program, we assessed assumptions that sampled fish were representative of populations of suckers in each lake. The size, age, and species composition of suckers were similar between randomly determined sites and fixed sites in each lake. We captured a wide size and age range of suckers using similar gear, indicating our gear did not exclude older and larger fish. We identified improvements that could be made in the monitoring program including increasing the number of randomly determined sample sites in both lakes, evaluation of gear-size selectivity, and validation of aging methods for juvenile Lost River and shortnose suckers. | Lost River Sucker, Deltistes luxatus, Shortnose sucker, Chasmistes brevirostris, | ||
2015 | Summer M. Burdick, Diane G. Elliott, Carl O. Ostberg, Carla M. Conway, Amari Dolan-Caret, Marshal S. Hoy, Kevin P. Feltz, Kathy R. Echols | Health and Condition of Endangered Juvenile Lost River and Shortnose Suckers Relative to Water Quality and Fish Assemblages in Upper Klamath Lake, Oregon, and Clear Lake Reservoir, California | Technical Report | Suckers, Water Quality | Upper Klamath | 18010206 | Most mortality of endangered Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) suckers in Upper Klamath Lake, Oregon, appears to occur within the first year of life. However, juvenile suckers in Clear Lake Reservoir, California, appear to survive longer and may even recruit to the spawning populations. Our goal in this study was to develop productive lines of inquiry into the causes of mortality of juvenile suckers, especially in Upper Klamath Lake, through comparison of sucker health and environmental conditions in both lakes. The health of juvenile suckers was associated with physical, biological, and chemical characteristics in each lake from July to September 2013 and 2014. Differences in sucker health and condition between lakes were considered the most promising clues to the causes of differential juvenile sucker morality between lakes. A low prevalence of petechial hemorrhaging of the skin (16 percent) and deformed opercula (8 percent) in Upper Klamath Lake suckers may indicate exposure to a toxin other than microcystin. Suckers grew slower in their first year of life, but had similar or greater triglyceride and glycogen levels in Upper Klamath Lake compared to Clear Lake Reservoir. These findings do not suggest a lack of prey quantity but may indicate lower prey quality in Upper Klamath Lake. | Lost River Sucker, Deltistes luxatus, Shortnose suckers, Chasmistes brevirostris, | |
2015 | Summer M. Burdick, David A. Hewitt, Josh E. Rasmussen, Brian S. Hayes, Eric C. Janney, Alta C. Harris | Effects of Lake Surface Elevation on Shoreline- Spawning Lost River Suckers | Technical Report | Aquatic Habitat / Invertebrates / Insects, Suckers, Water Temperature | Lost River, Upper Klamath | 18010206 | We analyzed remote detection data from PIT-tagged Lost River Suckers Deltistes luxatus at four shoreline spawning areas in Upper Klamath Lake, Oregon, to determine whether spawning of this endangered species was affected by low water levels. Our investigation was motivated by the observation that the surface elevation of the lake during the 2010 spawning season was the lowest in 38 years. Irrigation withdrawals in 2009 that were not replenished by subsequent winter–spring inflows caused a reduction in available shoreline spawning habitat in 2010. We compared metrics of skipped spawning, movement among spawning areas, and spawning duration across 8 years (2006–2013) that had contrasting spring water levels. Some aspects of sucker spawning were similar in all years, including few individuals straying from the shoreline areas to spawning locations in lake tributaries and consistent effects of increasing water temperatures on the accumulation of fish at the spawning areas. During the extreme low water year of 2010, 14% fewer female and 8% fewer male suckers joined the shoreline spawning aggregation than in the other years. Both males and females visited fewer spawning areas within Upper Klamath Lake in 2010 than in other years, and the median duration at spawning areas in 2010 was at least 36% shorter for females and 20% shorter for males relative to other years. Given the imperiled status of the species and the declining abundance of the population in Upper Klamath Lake, any reduction in spawning success and egg production could negatively impact recovery efforts. Our results indicate that lake surface elevations above 1,262.3–1,262.5 m would be unlikely to limit the number of spawning fish and overall egg production. | PIT tagging, Lost River Suckers, Deltistes luxatus | |
2009 | Nolan P. Banish, Barbara J. Adams, Rip S. Shively, Michael M. Mazur, David A. Beauchamp, Tamara M. Wood | Distribution and Habitat Associations of Radio-Tagged Adult Lost River Suckers and Shortnose Suckers in Upper Klamath Lake, Oregon | Technical Report | Suckers | Upper Klamath | 18010206 | Radiotelemetry was used to investigate the summer distribution and diel habitat associations of endangered adult Lost River suckers Deltistes luxatus and shortnose suckers Chasmistes brevirostris in northern Upper Klamath Lake, Oregon. From 2002 to 2004, Lost River and shortnose suckers were tracked by boat, and water depth and water quality were measured at each fish location. A series of water quality monitors were deployed in northern Upper Klamath Lake to provide temporal information on ambient temperature, pH, and dissolved oxygen, and water samples were collected to assess chlorophyll a concentration. Suckers moved into northern Upper Klamath Lake during June and began to leave in late September each year. Kernel density estimates revealed differences in the distribution in the northern portion of Upper Klamath Lake in 2002 and 2004. In 2003, however, both Lost River and shortnose suckers were commonly located within and offshore from Pelican Bay, a shallow (1.0–2.0 m), groundwater-influenced area of Upper Klamath Lake. This was especially obvious beginning in late July of 2003, concurrent with reduced dissolved oxygen levels (,4.0 mg/L) in the northern portion of Upper Klamath Lake that resulted from a dieoff of the cyanobacterium Aphanizomenon flos-aquae. Both Lost River and shortnose suckers were generally associated with water depths greater than the mean depth (2.8 m) of northern Upper Klamath Lake. Evidence | Lost River suckers, Deltistes luxatus, Shortnose suckers, Chasmistes brevirostris, Upper Klamath Lake, Distribution | |
2006 | Joel P. Van Eenennaam , Javier Linares , Serge I. Doroshov , David C. Hillemeier , Thomas E. Willson, Arnold A. Nova | Reproductive Conditions of the Klamath River Green Sturgeon | Technical Report | Other threatened fishes | Klamath Basin | 180102 | Reproductive characteristics of the adult Klamath River green sturgeon Acipenser medirostris were studied during the spawning migration. The locations of captures were from the mouth of the Klamath River upstream to river kilometer 72. A total of 82 females and 118 males were sampled for age, sex, body size, gonad weight, fecundity, egg size, and gonadal histology during April–July for five consecutive years (1999–2003). All fish sampled were considered mature adults, except for two immature males (body weight, 10 and 16 kg) captured close to the mouth of the river. The average body weight for males and females was 32 and 46 kg, respectively. The condition factor ranged from 0.60 to 0.92 for males and from 0.65 to 0.94 for females. The long tapered body conformation for both sexes made it difficult to sex individuals by external morphology, but in general, the females had a slightly more robust conformation. The fork length range was 139–199 cm in males and 151–223 cm in females. The majority (.90%) of males were 15–28 years old, and females were 19–34 years old. In all females the preovulatory condition was distinguished by the migration of the germinal vesicle to the animal pole, and the mean polarization index (distance of the germinal vesicle from the animal pole divided by oocyte diameter) was 0.042. The gonadosomatic index for females ranged from 7% to 17% and that for males from 2% to 8%. Individual and relative fecundity ranges were 59,000–242,000 and 2,000–4,000 eggs, respectively. The fully grown eggs were the largest recorded for North American sturgeon, averaging 4.33 mm in diameter. Although this study indicates that the Klamath River supports an important and potentially stable spawning migration, continued monitoring of the population and identification of spawning and nursery sites are critical for the long-term preservation of this species. | Green Sturgeon, Reproductive Conditions | |
2016 | M. L. Moser, J. A. Israel, M. Neuman, S. T. Lindley, D. L. Erickson, B. W. McCovey Jr, A. P. Klimley | Biology and life history of Green Sturgeon (Acipenser medirostris Ayres, 1854): state of the science | Technical Report | Other threatened fishes | United States | Green Sturgeon (GRS) Acipenser medirostris is one of the most marine-oriented of all sturgeons. It primarily spawns in the Sacramento, Klamath, and Rogue Rivers, yet lives most of its life in estuarine and coastal waters along the West Coast of North America. Spawning is only known to occur in the Rogue, Klamath and Sacramento rivers and optimal temperatures for egg incubation and larval growth are not always maintained in these dammed and highly regulated systems. Genetic analysis and acoustic telemetry have confirmed the presence of two genetically distinct populations; the southern population is listed as “threatened” under the ESA. Adults only enter natal rivers to spawn every 1–4 years. They make extensive coastal migrations in depths <80 m and move between estuaries where they aggregate in summer. The long marine occupancy of GRS potentially exposes them to mortality from various marine activities such as bottom trawl fishing, dredging, and ocean energy projects, but also provides a theoretical reservoir of fish to support viable populations. Critically-needed information for protection of this species includes: accurate annual population size estimates, data on distribution and habitat requirements for larvae and juveniles, and assessment of mortality due to bycatch, poaching and marine mammal predation. | Green Sturgeon, Distribution, Abundance, | ||
2014 | Phaedra Doukakis, | 2014 Informal status review for the Northern Distinct Population Segment of the North American green sturgeon (Acipenser medirostris) | Technical Report | Other threatened fishes | United States | This review examines new information about the Northern Distinct Population Segment (DPS) of green sturgeon (Acipenser medirostris) to assess its status as a Species of Concern (i.e., to verify whether its current position on the NMFS Species of Concern List is still appropriate). Based on the last status review in 2005, NMFS concluded that the Northern DPS did not warrant listing under the Endangered Species Act (ESA), but designated the species as a NMFS Species of Concern, due to concerns about fisheries harvest, alterations to freshwater habitat, and the lack of population data. The following summarizes our evaluation of and conclusions based on the new information that has become available since 2005 about the Northern DPS’ abundance, productivity, distribution, life history characteristics, and threats. | Endangered Species Act (ESA), North American green sturgeon (Acipenser medirostris), | ||
2007 | Ryan L. Benson, Scott Turo, Barry W. McCovey Jr. | Migration and movement patterns of green sturgeon (Acipenser medirostris) in the Klamath and Trinity rivers, California, USA | Technical Report | Other threatened fishes | Lower Klamath | 18010209 | Green sturgeon, Acipenser medirostris, movement and migration within the Klamath and Trinity rivers were assessed using radio and sonic telemetry. Sexually mature green sturgeon were captured with gillnets in the spring, as adults migrated upstream to spawn. In total, 49 green sturgeon were tagged with radio and/or sonic telemetry tags and tracked manually or with receiver arrays from 2002 to 2004. Tagged individuals exhibited four movement patterns: upstream spawning migration, spring outmigration to the ocean, or summer holding, and outmigration after summer holding. Spawning migrations occurred from April to June, as adultsmoved fromthe ocean upstreamto spawning sites. Approximately 18%of adults, those not out mignation in the spring, made spring postspawning outmigrations. The majority of adults, those not outmigrating in the spring, remained in discrete locations characterized as deep, low velocity pools for extended periods during the summer and early fall. Fall outmigration occurred when fish left summer holding locations, traveled rapidly downstream, and exited the river system.High river discharge due to the onset of winter rainstorms and freshets appear to be the key environmental cue instigating the fall outmigration. | Acipenseridae, Sonic telemetry, Radio telemetry, Summer holding, Outmigration, River discharge | |
2002 | Peter B. Adams, Churchill B. Grimes, Joseph E. Hightower, Steven T. Lindley, Mary L. Moser | Status Review for North American Green Sturgeon, Acipenser medirostris | Technical Report | Other threatened fishes | United States | In 2001, the National Marine Fisheries Service (NMFS) received a petition requesting Endangered Species Act (ESA) listing of North American green sturgeon (Acipenser medirostris) as a threatened or endangered species. In response to this petition, NMFS announced that it would initiate an ESA status review. The ESA allows the listing of A Distinct Population Segments@ (DPSs) of vertebrates as well as named species and subspecies. The combined U. S. Fish and Wildlife Service and NMFS policy on recognition of DPSs outlines two tests to identify separate units: discreteness and significance. A DPS may be considered discrete if it is markedly separate from other populations of the same taxon as a consequence of physical, physiological, ecological, or behavioral factors or if it is delimited by international governmental boundaries. The significance of the population will be decided on the basis of considerations including, but not limited to its persistence, evidence that loss of the DPS would result in a significant gap in spatial structure, evidence of the DPS representing the only surviving natural occurrence of a taxon, or evidence that the DPS differs markedly in its genetic characteristics. Once a DPS has been identified, a risk assessment is preformed to determine whether a listing is warranted for that unit. Green sturgeon have a complex anadromous life history. They spend more time in the ocean than any other sturgeon. The majority of green sturgeon are thought to spawn in the Klamath River, but spawning also occurs in the Sacramento and Rogue rivers. First spawning occurs at 15 years for males and 17 years for females. Female green sturgeon are thought to spawn only every 5 years. Adults migrate into rivers to spawn from April to July with a May to June peak. Eggs are spawned among rocky bottom substrates and juveniles spend 1 to 4 years in freshwater. | Green Sturgeon, Endangered Species Act (ESA), | ||
2009 | William H. Satterthwaite, Michael P. Beakes, Erin M. Collins, David R. Swank, Joseph E. Merz, Robert G. Titus, Susan M. Sogard, Marc Mangel | Steelhead Life History on California’s Central Coast: Insights from a State-Dependent Model | Technical Report | Steelhead/Rainbow Trout | United States | Steelhead Oncorhynchus mykiss display a dizzying array of life history variation (including the purely resident form, rainbow trout). We developed a model for female steelhead in coastal California (close to the southern boundary of their range) in small coastal streams. We combined proximate (physiological) and ultimate (expected reproductive success) considerations to generalize the notion of a threshold size for emigration or maturity through the development of a state-dependent life history theory. The model involves strategies that depend on age, size or condition, and recent rates of change in size or condition during specific periods (decision windows) in advance of the actual smolting or spawning event. This is the first study in which such a model is fully parameterized based on data collected entirely from California steelhead populations, the majority of data coming from two watersheds the mouths of whose rivers are separated by less than 8 km along the coast of Santa Cruz County. We predicted the occurrence of resident life histories and the distribution of sizes and ages at smolting for steelhead rearing in the upstream habitats of these streams. We compared these predictions with empirical results and show that the theory can explain the observed pattern and variation. | Steelhead, Life History, | ||
2001 | National Marine Fisheries Service (NMFS) | Endangered and Threatened Species: Final Listing Determination for Klamath Mountains Province Steelhead | Technical Report | Steelhead/Rainbow Trout | Klamath Basin | 180102 | In keeping with a recent Federal Court ruling, NMFS has reconsidered the status of Klamath Mountains Province (KMP) steelhead Evolutionarily Significant Unit (ESU) under the Endangered Species Act of 1973 (ESA), as amended. After reviewing the best available scientific and commercial information, NMFS has determined that KMP steelhead do not warrant listing as threatened or endangered at this time. | Steelhead, Endangered Species Act (ESA), | |
2006 | C.W. Huntington | Estimates of anadromous fish runs above the site of Iron Gate Dam | Technical Memo | Dam Operations, Salmon | Upper Klamath | 18010203 | The following memorandum is intended to provide updates on two elements of work that has been done to estimate the potential for anadromous fish production above the site of Iron Gate Dam (IGD). These elements include: | Anadromous fish, Iron Gate Dam (IGD), Upper Klamath, Chinook Salmon | |
1998 | James S. Hopelainı | Age, Growth, and Lief History of Klamath River Basin Steelhead Trout (Oncorhynchus mykiss irideus) as Determined from Scale Analysis | Technical Report | Steelhead/Rainbow Trout | Klamath Basin | 180102 | AduIt steeIhead (Oncorhynchus mykiss irideus) scales were analyzed from eight fall-run, two spring-run, and one winter-run stocks within the Klamath-Trinity River system, from 1981 through 1983, to provide basic information on age, growth, and life history. The higher degree of half-pounder occurrence of upper KIamath River steelhead stocks (86.7 to 100%) compared to Trinity River steelhead stocks (32.0 to 80.0%) was the major life history difference noted in scale analysis. Early life history was similar for all areas sampled with most juveniles (86.4%) remaining in freshwater during the first two years of life before migrating to sea. Repeat spawning ranged from 17.6 lo 47.9% for fall-run, 40.0 to 63.6% for spring-run, and 31.1% for winter-run steelhead. Mean length of adults at first spawning was inversely related to percent half-pounder occurrence in each stock. Ages of returning spawners, back calculated lengths at various life stages, and growth information are presented. | Steelhead, Life History, Scale Analysis | |
1966 | John D. Fortune Jr, Arthur R. Gerlach, C. J. Hanel | A Study to Determine the Feasibility of Establishing Salmon and Steelhead in the Upper Klamath Basin | Technical Report | Dam Operations, Salmon, Steelhead/Rainbow Trout, Water Temperature | Upper Klamath, Mid Klamath | 180102 | Published reports and personal interviews indicate that chinook salmon were present in the Mid- and Upper-Klamath Basin during the months of September, October and November, until the early 1900's. A photograph Because of difficulty in differentiating steelhead from large rainbow trout , accurate information on the history of steelhead migrations was impossible to obtain. It can be said that an intrastream migration of large rainbow trout or sen run steelhead did occur, appearing in the Upper Cash in the fall and again in the spring. An intrastream migration of resident rainbows now occurs during the spring. In the section of the Klamath River from the Frain Ranch (River m i l e 217) to Klamath Lake area and from Klamath Lake up the Williamson-Sprague River systems. A smaller migration occurs in the fall in the Klamath River upstream over the J. C. Boyle fish ladder. | Chinook salmon, Steelhead, Rainbow trout, | |
1994 | Busby, P. J., T. C. Wainwright, R. S. Waples | Status Review for Klamath Mountains Province Steelhead | Technical Report | Dam Operations, Hatcheries, Redband Trout, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The Endangered Species Act (ESA) allows listing of "distinct population segments" of vertebrates as well as named species and subspecies. The policy of the National Marine Fisheries Service (NMFS) on this issue for Pacific salmon and steelhead is that a population will be considered "distinct" for purposes of the ESA if it represents an Evolutionarily Significant Unit (ESU) of the species as a whole. To be considered an ESU, a population or group of populations must 1) be substantially reproductively isolated from other populations, and 2) contribute substantially to ecological/genetic diversity of the biological species. Once an ESU is identified, a variety of factors related to population abundance are considered in determining whether a listing is warranted. NMFS received a petition in May 1992 asking that winter steelhead of Oregon's Illinois River be listed as a threatened or endangered species under the ESA. In May 1993, NMFS published a Federal Register notice concluding that Illinois River winter steelhead did not by themselves constitute a species as defined by the Endangered Species Act (ESA). At the same time, NMFS indicated that it would undertake a broader status review to determine the boundaries of the Evolutionarily Significant Unit (ESU) that contains Illinois River winter steelhead and determine whether this broader group was threatened or endangered. This report summarizes biological and environmental information gathered in that status review. Based on genetic, life history, zoogeographic, geologic, and environmental information, we conclude that the ESU that contains Illinois River winter steelhead extends from the vicinity of Cape Blanco in southern Oregon to the Klamath River Basin (inclusive) in northern California. These are essentially the boundaries of a prominent geologic feature known as the Klamath Mountains Province. | Endangered Species Act (ESA), Redband trout, rainbow trout | |
2007 | Russell F. Thurow, Bruce E. Rieman, Danny C. Lee, Philip J. Howell, Raymond D. Perkinson | Distribution and Status of Redband Trout in the Interior Columbia River Basin and Portions of the Klamath River and Great Basins | Technical Report | Redband Trout | Klamath Basin | 180102 | We summarized existing knowledge (circa 1996) of the potential historical range and the current distribution and status of non-anadromous interior redband trout Oncorhynchus mykiss ssp. in the U.S. portion of the interior Columbia River Basin and portions of the Klamath River and Great Basins (ICRB). We estimated that the potential historical range included 5,458 subwatersheds and represented about 45% of the species’ North American range. Two forms of interior redband trout were considered, those sympatric with steelhead Oncorhynchus mykiss ssp. and allopatric forms that evolved outside the range of steelhead. Data were compiled from existing surveys and expert opinions of over 150 biologists during the scientific assessment for the Interior Columbia River Basin Ecosystem Management Project (ICBEMP). We also predicted fish presence and status in unsampled areas, using statistical models to quantitatively explore relationships among redband trout status and distribution, the biophysical environment, and land management. Redband trout had the highest likelihood of being present or supporting strong populations in mid-size or smaller streams, of higher gradients, in highly erosive landscapes with steep slopes, with more solar radiation, and mean annual air temperatures less than 8–9ºC. Variables reflecting the degree of human disturbance within watersheds (road density, land ownership, and management emphasis) were also important. Redband trout remain the most widely distributed native salmonid in the ICBEMP assessment area and the second most widely distributed native fish, occupying 47% of the subwatersheds and 64% of their potential range. Sympatric redband trout are the most widely distributed of the two forms, present in an estimated 69% of their potential range. | Redband Trout, Distribution, Conservation, Restoration | |
2004 | K. J. Rodnick, A. K. Gamerl, K. R. Lizars, M.T. Bennett, R. N. Rausch, E. R. Keeley | Thermal tolerance and metabolic physiology among redband trout populations in south-eastern Oregon | Academic Article | Redband Trout, Water Temperature | United States | Streamside measurements of critical thermal maxima (Tcrit), swimming performance (Ucrit), and routine (Rr) and maximum (Rmax) metabolic rates were performed on three populations of genetically distinct redband trout Oncorhynchus mykiss in the high-desert region of south-eastern Oregon. The Tcrit values (29401 C) for small (40–140 g) redband trout fromthe three streams, and large (400–1400 g) redband trout at Bridge Creek were not different, and were comparable to published values for other salmonids. At high water temperatures (24–28 C), large fish incurred higher metabolic costs and were more thermally sensitive than small fish. Ucrit (3601 LF s1), Rr (20013 mg O2 kg0830 h1) and metabolic power (53322 mg O2 kg0882 h1) were not significantly different between populations of small redband trout at 24 C. Rmax and metabolic power, however, were higher than previous measurements for rainbow trout at these temperatures. Fish from Bridge Creek had a 30% lower minimum total cost of transport (Cmin), exhibited a lower refusal rate, and had smaller hearts than fish at 12-mile or Rock Creeks. In contrast, no differences in Ucrit or metabolism were observed between the two size classes of redband trout, although Cmin was significantly lower for large fish at all swimming speeds. Biochemical analyses revealed that fish from 12-mile Creek, which had the highest refusal rate (36%), were moderately hyperkalemic and had substantially lower circulating levels of free fatty acids, triglycerides and albumin. Aerobic and anaerobic enzyme activities in axial white muscle, however, were not different between populations, and morphological features were similar. | Redband trout, Thermal and Metabolic Physiology, Morphology, Water Temperature | ||
2016 | Brooke E. Penaluna, Alicia Abadía-Cardoso, Jason B. Dunham, Francisco J. García-Dé León, Robert E. Gresswell, Arturo Ruiz Luna, Eric B. Taylor, Bradley B. Shepard, Robert Al-Chokhachy, Clint C. Muhlfeld, Kevin R. Bestgen, Kevin Rogers, Marco A. Escalante, Ernest R. Keeley, Gabriel M. Temple, Jack E. Williams, Kathleen R. Matthews, Ron Pierce, Richard L. Mayden, Ryan P. Kovach, John Carlos Garza, Kurt D. Fausch | Conservation of Native Pacific Trout Diversity in Western North America | Technical Report | Climate Change Effects, Other threatened fishes, Water Allocation & Rights | United States | Pacific trout Oncorhynchus spp. in western North America are strongly valued in ecological, socioeconomic, and cultural views, and have been the subject of substantial research and conservation efforts. Despite this, the understanding of their evolutionary histories, overall diversity, and challenges to their conservation is incomplete. We review the state of knowledge on these important issues, focusing on Pacific trout in the genus Oncorhynchus. Although most research on salmonid fishes emphasizes Pacific salmon, we focus on Pacific trout because they share a common evolutionary history, and many taxa in western North America have not been formally described, particularly in the southern extent of their ranges. Research in recent decades has led to the revision of many hypotheses concerning the origin and diversification of Pacific trout throughout their range. Although there has been significant success at addressing past threats to Pacific trout, contemporary and future threats represented by nonnative species, land and water use activities, and climate change pose challenges and uncertainties. Ultimately, conservation of Pacific trout depends on how well these issues are understood and addressed, and on solutions that allow these species to coexist with a growing scope of human influences. | Pacific trout, Conservation, Pacific Trout Diversity, | ||
2012 | Amy L. Haak, Jack E. Williams | Spreading the Risk: Native Trout Management in a Warmer and Less-Certain Future | Technical Report | Redband Trout, Salmon, Steelhead/Rainbow Trout | United States | Management strategies that increase biological diversity and promote varied approaches to population protection are more likely to succeed during a future in which global warming drives rapid environmental change and increases uncertainty of future conditions.We describe how the concept of a diversemanagement portfolio can be applied to native trout conservation by increasing representation (protecting and restoring diversity), resilience (having sufficiently large populations and intact habitats to facilitate recovery from rapid environmental change), and redundancy (saving a sufficient number of populations so that some can be lost without jeopardizing the species). Saving diversity for native trout requires the conservation of genetically pure populations, the protection and restoration of life history diversity, and the protection of populations across the historical range. Protecting larger stronghold populations is important because such populations will have a better chance of surviving future disturbances, including those associated with climate change. The long-term persistence of populations is likely to require management for larger population sizes and larger habitat patches than currently exist for many native trout populations. Redundancy among these elements is important given that many populations are small and occupy reduced habitat in fragmented stream systems and therefore are increasingly vulnerable to extirpation. Application of the concept is further described in case studies of Yellowstone cutthroat trout Oncorhynchus clarkii bouvieri and Rio Grande cutthroat trout O. clarkii virginalis, two subspecies that illustrate many of the challenges that are common to management of western native trout. | Salmon, Yellowstone Cutthroat Trout, Redundancy, Resilience, Rio Grand Cutthroat Trout | ||
2012 | USFWS | Conservation Agreement for Pacific Lamprey | Formal Agreement | Other threatened fishes | United States | The Pacific Lamprey Conservation Initiative (Initiative) has been developed to promote implementation of conservation measures for Pacific Lamprey in Alaska, Washington, Oregon, Idaho, and California. The Initiative has three phases: Assessment and Template for Conservation Measures (Luzier et al. 2011); Conservation Agreement (Agreement); and Regional Implementation Plans. The Agreement represents a cooperative effort among natural resource agencies and tribes to reduce threats to Pacific Lamprey and improve their habitats and population status. Cooperative efforts through the Agreement intend to: a) develop regional implementation plans derived from existing information and plans; b) implement conservation actions; c) promote scientific research; and d) monitor and evaluate the effectiveness of those actions. The strategies and schedules for implementing conservation actions by region will be described in the regional implementation plans. In regions that are early in the planning process, the work will focus on identification of ongoing and needed actions. In other regions that have already gone through an extensive planning process, the focus will be on prioritizing actions, identifying potential funding and developing schedules for implementation. For example, in the Columbia River region the implementation plans would rely heavily on the threats and the proposed actions identified in the Tribal Pacific Lamprey Restoration Plan for the Columbia River (2011), Army Corps of Engineers 10- year Passage Plan for Lamprey (2009), the U.S. Bureau of Reclamation Lamprey Assessment (2011), and the U.S. Fish and Wildlife Service (USFWS) Assessment and Template for Conservation Measures (Luzier et al. 2011) | Pacific Lamprey, Entosphenus tridentatus, Conservation actions, | ||
2015 | Damon H. Goodman, Stewart B. Reid, Nicholas A. Som, William R. Poytress | The punctuated seaward migration of Pacific lamprey (Entosphenus tridentatus): environmental cues and implications for streamflow management | Technical Report | In-Stream Flow / Flow Regime, Other threatened fishes | United States | We investigated emigration timing of juvenile Pacific lamprey (Entosphenus tridentatus) over a 10-year period in the Sacramento River, California, USA. Emigration was punctuated with 90% of macrophthalmia in daily catches of at least 50 individuals. Macrophthalmia were observed primarily between November and May, with among-year variation in median emigration date over four times that of sympatric anadromous salmon. Our best model associating catch and environmental factors included days from rain event, temperature, and streamflow. We found strong evidence for an association of catch with days from rain events, a surrogate for streamflow, with 93% of emigrants caught during an event and the two subsequent days. Emigration was more likely during nighttime during subdaily sampling after accounting for the effects of factors significantly associated with daily catch. These results emphasize the importance of natural variation in streamflow regimes and provide insight for management practices that would benefit emigrating lampreys, such as synchronizing dam releases with winter and spring storms to reduce migration time, timing diversions to avoid entrainment during emigration windows, and ensuring streamflows are sufficient to reach the ocean, thereby avoiding mass stranding events. | Pacific Lamprey, Entosphenus tridentatus, Streamflow management | ||
2017 | Damon H. Goodman, Stewart B. Reid, Rene C. Reyes, Brandon J. Wu, Brent B. Bridges | Screen Efficiency and Implications for Losses of Lamprey Macrophthalmia at California’s Largest Water Diversions | Technical Report | Other threatened fishes | United States | We investigated the guidance efficiency of fish screens for the protection of emigrating Pacific Lamprey Entosphenus tridentatus and Western River Lamprey (also known as River Lamprey) Lampetra ayresii in a series of experimental trials. All trials were conducted at the Tracy Fish Collection Facility, located in the Sacramento– San Joaquin River Estuary at the entrance to one of the world’s largest surface water diversions. Using 1,200 lamprey macrophthalmia, we tested for the effect of screen type, time of day, and channel water velocity to guide their swimming behavior to avoid entrainment. We found overwhelming evidence for an effect of screen type on efficiency, whereby all lampreys were successfully guided to a holding tank when a vertical traveling screen was used. This was likely due to the small pore size of the screen relative to lamprey sizes. In contrast, the efficiency of louvers, a behavioral screen designed for salmonids, varied by the interaction of time of day and channel velocity. During nighttime, when lamprey typically emigrate, louver guidance efficiency ranged from 21% (95% CI, 14–30%) to 24% (95% CI, 16–34%). These results were applied to estimate the probability for salvage of lamprey macrophthalmia at the Tracy Fish Collection Facility, which includes a two-stage fish screen design. Between 1957 and 2014, we estimated that 94–96% of the lampreys that were entrained in the export flows were lost and not returned to the delta. However, the probability for fish loss was reduced in 2014 when the secondary louver was replaced with a vertical traveling screen. Our results suggest that lamprey macrophthalmia entrainment into the canals will be eliminated at the Tracy Fish Collection Facility if the primary screen is converted to vertical traveling screen. | Pacific Lamprey, Entosphenus tridentatus, Western River Lamprey, River Lamprey, | ||
2015 | Damon H. Goodman, Stewart B. Reid | Regional Implementation Plan for Measures to Conserve Pacific Lamprey (Entosphenus tridentatus), California – South Central Coast Regional Management Unit | Technical Report | Other threatened fishes | United States | Pacific Lamprey, Entosphenus tridentatus, were historically widely distributed from Mexico north along the Pacific Rim to Japan. They are culturally important to indigenous people throughout their range, and play a vital role in the ecosystem: cycling marine nutrients, passing primary production up the food chain as filter feeding larvae, promoting bioturbation in sediments, and serving as food for many mammals, fishes and birds. Recent observations of substantial declines in the abundance and range of Pacific Lamprey have spurred conservation interest in the species, with increasing attention from tribes, agencies, and others. In 2003 the U.S. Fish and Wildlife Service (USFWS) was petitioned by 11 conservation groups to list four species of lamprey in Oregon, Washington, Idaho, and California, including the Pacific Lamprey, under the Endangered Species Act (ESA) (Nawa et al. 2003). The USFWS review of the petition indicated a likely decline in abundance and distribution in some portions of the Pacific Lamprey's range and the existence of both long-term and proximate threats to this species, but the petition did not provide information describing how the portion of the species’ petitioned range (California, Oregon, Idaho, and Washington) or any smaller portion is appropriate for listing under the ESA. The USFWS was therefore unable to define a listable entity based on the petition and determined Pacific Lamprey to be ineligible for listing (USFWS 2004). | Other threatened fishes, Water Quality, Upper Klamath, Lower Klamath, Contaminants, Pacific Lamprey, Entosphenus tridentatus, Conservation measures, Limiting factors | ||
2002 | David A. Close, Martin S. Fitzpatrick, Hiram W. Li | The Ecological and Cultural Importance of a Species at Risk of Extinction, Pacific Lamprey | Technical Report | Other threatened fishes | Klamath Basin | The cultural and ecological values of Pacific lamprey (Lampetra tridentata) have not been understood by Euro-Americans and thus their great decline has almost gone unnoticed except by Native Americans, who elevated the issue and initiated research to restore its populations, at least in the Columbia Basin. They regard Pacific lamprey as a highly valued resource and as a result ksuyas (lamprey) has become one of their cultural icons. Ksuyas are harvested to this day as a subsistence food by various tribes along the Pacific coast and are highly regarded for their cultural value. Interestingly, our review suggests that the Pacific lamprey plays an important role in the food web, may have acted as a buffer for salmon from predators, and may have been an important source of marine nutrients to oligotrophic watersheds. This is very different from the Euro- American perception that lampreys are pests. We suggest that cultural biases affected management policies. | Ecological Importance, Cultural Importance, Pacific lamprey, Lampetra tridentata, Spawning migration, Conservation | ||
2010 | State of California North Coast Regional Water Quality Control Board | Final Staff Report for the Klamath River Total Maximum Daily Loads (TMDLs) Addressing Temperature, Dissolved Oxygen, Nutrient and Microcystin Impairments in California the Proposed Site Specific Dissolved Oxygen Objectives for the Klamath River in California, and the Klamath River and Lost River Implementation Plans | Technical Report | Contaminants, Hatcheries, Salmon, Steelhead/Rainbow Trout, Water Quality, Water Temperature | Klamath Basin | 180102 | Final Staff Report for the Klamath River Total Maximum Daily Loads (TMDLs) Addressing Temperature, Dissolved Oxygen, Nutrient and Microcystin Impairments in California the Proposed Site Specific Dissolved Oxygen Objectives for the Klamath River in California, and the Klamath River and Lost River Implementation Plans. | Total Maximum Daily Loads (TMDLs), Microcystin impairments, dissolved oxygen | |
2017 | California Department of Fish and Wildlife | State and Federally Listed Endangered and Threatened Animals of California | Technical Memo | Other threatened fishes, Suckers | United States | This is a list of animals found within California or off the coast of the State that have been classified as Endangered or Threatened by the California Fish & Game Commission (state list) or by the U.S. Secretary of the Interior or the U.S. Secretary of Commerce (federal list). The federal agencies responsible for listing are the U.S. Fish and Wildlife Service (USFWS) and the National Marine Fisheries Service (NMFS). The official California listing of Endangered and Threatened animals is contained in the California Code of Regulations, Title 14, Section 670.5. The official federal listing of Endangered and Threatened animals is published in the Federal Register, 50 CFR 17.11. The California Endangered Species Act of 1970 created the categories of “Endangered” and “Rare.” The California Endangered Species Act of 1984 created the categories of “Endangered” and “Threatened.” On January 1, 1985, all animal species designated as “Rare” were reclassified as “Threatened.” Also included on this list are animal “Candidates” for state listing and animals “Proposed” for federal listing; federal “Candidates” are currently not included. A state Candidate species is one that the Fish and Game Commission (FGC) has formally declared a candidate species. A federal Proposed species is one that has had a published proposed rule to list in the Federal Register. | Endangered and Threatened species, | ||
2012 | Nicole Athearn, Daryl Van Dyke, Joel Shinn, Matt Barry, Rick Kearney, Steve Morey, William Kendall, Kurt Rinehart, Nancy Finley, Laurie Sada, Erin Williams, Gary Curtis, Jason Cox, Laura Finley, Nick Hetrick, Dave Mauser, Josh Rasmussen, Trisha Roninger | Structured Decision Making for the Selection of Surrogate Species: A Case Study in the Klamath River Watershed A Case Study… | Technical Report | Adaptive Management, Aquatic Habitat / Invertebrates / Insects, Habitat Restoration | Klamath Basin | 180102 | The U. S. Fish and Wildlife Service (FWS; Service) released its Draft Guidance for Selecting Species for Design of Landscape-scale Conservation (hereafter Guidance; USFWS, 2012) in July 2012 to provide guidance for directing Strategic Habitat Conservation towards achieving and maintaining functional landscapes. Beginning in the summer of 2012, scientists and managers from three Klamath field offices in Arcata and Yreka, California and Klamath Falls, Oregon came together with those from the Klamath National Wildlife Refuge complex in Tulelake, California and the Pacific Southwest regional office in Sacramento, California to define conservation objectives for a functional landscape in the Klamath River watershed and to pilot a surrogate species selection process at a USFWS/USGS Structured Decision Making (SDM) workshop at the FWS National Conservation Training Center. Our workshop problem statement was: We are using the process of Strategic Habitat Conservation in conjunction with a surrogate species approach to develop innovative and strategic approaches to species and ecosystem conservation in the Klamath River watershed. | Strategic Habitat Conservation, Structured Decision Making, Surrogate Species, Decision Analysis | |
1996 | Trihey & Associates, Inc | Instream Flow Requirements For Tribal Trust Species in the Klamath River | Technical Report | Aquatic Habitat / Invertebrates / Insects, In-Stream Flow / Flow Regime, Other threatened fishes, Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The Yurok People have long depended on the fish resources of the Klamath River. For centuries, the Klamath River provided fish throughout the year to meet the needs of the Yurok Tribe as well as the Karuk, Hoopa and Klamath Tribes. The river is still central to the everyday lives of the Yurok People. Historically, adult salmon and steelhead returning each year to spawn, including spring and fall chinook salmon, coho salmon and steelhead, probably numbered more than one million fish. At this time large numbers of eulachon, lamprey and green sturgeon also inhabited the river. These fish were harvested for cultural, subsistence and commercial purposes. They are referred to in the report as the Yurok Tribal Species. | Tribal Trust Species, Streamflow requirements, eulachon, lamprey, green sturgeon, salmon, steelhead | |
2006 | M. F. Willson, R. H. Armstrong, M. C. Hermans, K Koski | Eulachon: A Review of Biology and an Annotated Bibliography | Technical Report | Other threatened fishes | United States | This review and annotated bibliography was stimulated by the realization that while eulachon are an important forage fish, they are also under-studied. Historically, eulachon have had relatively little commercial value, compared to more widely known species such as herring. However, this oil-rich little fish has had an important role in the culture of Natives on the coast of southeast and south-central Alaska, and First Nations on the cost of British Columbia. Eulachon ‘grease’ was a major item of trade with Natives of Interior Alaska, as well as an important food source for coastal peoples. Subsistence use of eulachon continues, at least in some areas. The authors of this review hope that it will help stimulate research on the ecology and evolution of eulachon and their predators. This review was completed in the fall of 2003. References from fall 2003 to date are listed in an addendum at the end of this manuscript. | Eulachon, Taxonomy, Distribution, Morphology | ||
2010 | Richard G. Gustafson, Michael J. Ford, David Teel, Jonathan S. Drake | Status Review of Eulachon (Thaleichthys pacificus) in Washington, Oregon, and California | Technical Memo | Other threatened fishes | United States | On 27 November 2007, the National Marine Fisheries Service (NMFS) received a petition seeking to list southern eulachon (Thaleichthys pacificus), as a threatened or endangered species under the Endangered Species Act (ESA) of 1973. NMFS evaluated the petition to determine whether the petitioner provided substantial information as required by the ESA to list a species. Additionally, NMFS evaluated whether information contained in the petition might support the identification of a distinct population segment (DPS) that may warrant listing as a species under the ESA. NMFS determined that the 27 November 2007 petition did present substantial scientific and commercial information, or cited such information in other sources, that the petitioned action may be warranted and, subsequently, NMFS initiated an updated status review of eulachon in Washington, Oregon, and California. The Eulachon Biological Review Team (BRT)—consisting of scientists from the Northwest Fisheries Science Center, Alaska Fisheries Science Center, Southwest Fisheries Science Center, U.S. Fish and Wildlife Service, and U.S. Forest Service—was formed by NMFS, and the team reviewed and evaluated scientific information compiled by NMFS staff from published literature and unpublished data. Information presented at a public meeting in June 2008 in Seattle, Washington, and data submitted from state agencies and other interested parties were also considered. The BRT also reviewed additional information submitted to the ESA Administrative Record. | Eulachon, Thaleichthys pacificus, Eulachon Biological Review Team (BRT), | ||
2008 | Thomas H. Williams, Brian C. Spence, Walt Duffy, Dave Hillemeier, George Kautsky, Tom E. Lisle, Mike McCain, Thomas E. Nickelson, Ethan Mora, Tom Pearson | Framework for Assessing Viability of Threatened Coho Salmon in the Southern Oregon/Northern California Coast Evolutionarily Significant Unit | Technical Memo | Salmon | United States | This report describes a framework for assessing coho salmon population viability that includes developing objective, measurable criteria that when met, would define when the Southern Oregon/Northern California Coast Coho Salmon Evolutionarily Significant Unit (ESU) is naturally self-sustaining with a low risk of extinction. Technical recovery planning for Pacific salmon and steelhead is intended to produce biologically based viability criteria for listed ESUs that will be considered in setting recovery goals. The listing unit for Pacific salmon is the ESU. ESUs are defined as a population or group of populations that are substantially reproductively isolated from other conspecific population units and that represent an important part of the evolutionary legacy of the species. The Southern Oregon/Northern California Coast (SONCC) Coho Salmon ESU includes coho salmon populations from Elk River (Oregon) in the north to Mattole River (California) in the south. This report provides a framework to assess the viability of individual populations within this region and describes the spatial configuration of viable independent populations and dependent populations that would lead to a high likelihood of long-term ESU persistence. This report constitutes a technical recommendation by the TRT intended to assist recovery planners in developing recovery strategies and prioritizing recovery actions. It does not constitute official agency policy. | Coho Salmon, Southern Oregon/Northern California Coast (SONCC), Evolutionarily Significant Unit (ESU), Population Viability, | ||
2010 | NOAAF | Biological Opinion: Operation of the Klamath Project between 2010 and 2018 | Technical Report | Climate Change Effects, Dam Operations, Habitat Restoration, In-Stream Flow / Flow Regime, Salmon | Klamath Basin, Upper Klamath, Mid Klamath, Shasta River, Scott River, Lower Klamath | 180102 | Today, the Klamath basin’s hydrologic system consists of a complex of inter-connected rivers, lakes, marshes, dams, diversions, wildlife refuges, and wilderness areas. Alterations to the natural hydrologic system began in the late 1800s, accelerating in the early 1900s, including water diversions by private water users, water diversions by the Klamath Project operated by Reclamation, and by several hydroelectric dams operated by a private company, PacifiCorp. The first PacifiCorp development was constructed in 1918 (Copco Dam) on the Klamath and it operated under a 50-year license issued by the Federal Energy Regulatory Commission (FERC) until the license expired in 2006. Although Reclamation’s Link River Dam and PacifiCorp’s Keno Dam currently have fish ladders, none of PacifiCorp’s dams were constructed with fish ladders sufficient to pass anadromous fish and, as a result, salmon and steelhead have effectively been blocked from accessing the upper reaches of the basin for close to a century. Beginning in 1956, Iron Gate Reservoir (the lowest dam in the system) flow releases were generally governed by guidelines outlined within the FERC license, commonly referred to as “FERC minimum flows.” FERC’s original license to PacifiCorp to operate its hydroelectric project on the Klamath River never underwent Endangered Species Act (ESA) consultation. After reviewing the current status of SONCC coho salmon and its critical habitat, the environmental baseline for the action area, the effects of the Project and the cumulative effects, it is NMFS’ biological opinion that the action, as proposed, is likely to jeopardize the continued existence of SONCC coho salmon, and is likely to destroy or adversely modify SONCC coho salmon designated critical habitat. | SONCC, Coho Salmon, Risk of Extinction, Environmental Baseline, Critical Habitat, Hydrologic system | |
2002 | California Department of Fish and Game | Status review of California Coho Salmon North of San Francisco | Technical Report | Salmon | United States | On July 28, 2000, the Fish and Game Commission (Commission) received a petition to list coho salmon north of San Francisco as an endangered species under provisions of the California Endangered Species Act (CESA). The Commission referred the petition to the Department of Fish and Game (Department) on August 7, 2000, for evaluation. The Department found that the information in the petition was sufficient to indicate the action may be warranted and recommended the Commission accept the petition. The petition was accepted by the Commission on April 5, 2001. On April 27, 2001 the Commission published a Notice of Findings in the California Regulatory Notice Register declaring coho salmon a candidate species, thereby starting the candidacy period. This report contains the results of the Department’s status review and recommendations to the Commission. The Department evaluated the status separately for the two coho salmon Evolutionarily Significant Units (ESU) that occur in California: Southern Oregon/Northern California Coast Coho ESU (SONCC Coho ESU - those populations from Punta Gorda north to the Oregon border) and the Central California Coast Coho The Department concludes that the listing of the California portion of the SONCC Coho ESU as endangered is not warranted, but listing as threatened is warranted. The Department recommends that the Commission add coho salmon north of Punta Gorda to the list of threatened species. The Department concludes that coho salmon in the CCC Coho ESU is in serious danger of becoming extinct throughout all or a significant portion of its range. The Department concludes that listing this species as an endangered species is warranted. The Department recommends that the Commission add coho salmon north of, and including, San Francisco Bay to Punta Gorda to the list of endangered species. | Coho Salmon, California Endangered Species Act (CESA), Evolutionarily Significant Units (ESU), Central California Coast Coho ESU (CCC Coho ESU) | ||
1994 | Larry R. Brown, Peter B. Moyle, Ronald M. Yoshiyama | Historical Decline and Current Status of Coho Salmon in California | Technical Report | Salmon | United States | The southernmost populations of coho salmon Oncorhynchus kisutch occur in California where native coho stocks have declined or disappeared from a1l streams in which they were historically recorded. Coho salmon previously occurred in as many as 582 streams, from the Smith River near the Oregon border to the San Lorenzo River on the central coast. Information on the recent presence or absence of coho salmon was available for only 248 (43%) of those streams. Of these 248 streams, 54% still contained coho salmon and 46% did not. The farther south a stream is located, the more likely it is to have lost its coho salmon population. We estimate that the total number of adult coho salmon entering California streams in 1987-1991 averaged around 31,000 fish per year, with hatchery populations making up 57% of this total. Thus, about 13,000 nonhatchery coho salmon have been spawning in California streams each year since 1987, an estimate that includes naturalized stocks containing about 9,000 fish of recent hatchery ancestry. There are now probably less than 5,000 native coho salmon (with no known hatchery ancestry) spawning in California each year, many of them in populations ofless than 100 individuals. Coho populations today are probably less than 6% of what they were in the 1940s, and there has been at least a 70% decline since the 1960s. There is every reason to believe that California coho populations, including hatchery stocks, will continue to decline. The reasons for the decline of coho salmon in California include: stream alterations brought about by poor land-use practices (especially those related to logging and urbanization) and by the effects of periodic floods and drought, the breakdown of genetic integrity of native stocks, introduced diseases, overharvest, and climatic change. We believe, that ,coho salmon in California qualify for listing as a threatened species under state law, and certain populations maybe threatened or endangered under federal law. | Coho Salmon, Historical Decline, Threatened species | ||
1930 | John O. Snyder | Fish Bulletin No. 34. Salmon of the Klamath River California. I. The Salmon and the Fishery of Klamath River. II. A Report on the 1930 Catch of King Salmon in Klamath River | Academic Article | Salmon | Klamath Basin | 180102 | The present paper is a digest of the work accomplished in a salmon investigation conducted under the authority of the Bureau of Commercial Fisheries of the California Division of Fish and Game. Active work was begun in 1919, and is still in progress. At the outset the investigation was so planned as to contribute as directly as possible to the solution of certain questions relating to the conservation of the fishery. The work has progressed in a fairly satisfactory way in some directions as will appear, while in others the results are not so good. The information now most needed relates to the seaward migration of young salmon, and to the relative contribution of natural and artificial propagation to the population of the river. It may seem that the matter of depletion is overstressed in this report, since its progress has been evident for years. A condition of increasing depletion was not sufficiently evident on the Klamath however, to be convincing to those most interested. In fact, opinions to the contrary were commonly held, some asserting that the "run" was not only maintaining itself but that it was gradually building up. There is very little exact information concerning fishing operations on Klamath River previous to 1912, and no really dependable statistics are available relating to the catch before that time. During the period of placer mining on the river, large numbers of salmon were speared or otherwise captured on or near their spawning beds, and if credence is given to the reports of old miners, there then appeared the first and perhaps major cause of early depletion. In 1912 three plants operated on or near the estuary and the river was heavily fished, no limit being placed on the activities of anyone. | Salmon, Fishing Operations, | |
2016 | Russell W. Perry, John M. Plumb, Nicholas A. Som, Nicholas Hetrick, Thomas Hardy | Modeling Infection and Mortality of Juvenile Chinook Salmon due to Disease caused by Ceratonova Shasta in the Klamath River | Technical Report | Salmon | Klamath Basin | 180102 | Disease can often shape population dynamics but complex host-parasite interactions can be difficult to incorporate into life cycle models. Juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Klamath River become infected with the myxozoan parasite Ceratonova shasta when the polychaete worm Manayunkia speciosa releases actinospores into the water column. In the Klamath River, disease prevalence and actinospore concentrations have been routinely monitored since 2005, providing information about population-level disease prevalence. Concurrently, sentinel experiments with fish held in-river for a known duration have revealed that mortality increases with spore concentration and temperature. We developed statistical models to relate rates of infection and mortality to spore concentrations and temperature. We then incorporated these models into a dynamic life-cycle simulation model to understand how migration and exposure of juvenile Chinook salmon influences the magnitude and location of their mortality in the Klamath River. This model provides an estimate of disease-related mortality at the population-level, which can then be incorporated as a life-stage transition probability in a broader life-cycle model. | Chinook salmon, Ceratonova shasta, Disease-related mortality, Klamath River | |
2016 | CDFG | Klamath River Basin Fall Chinook Salmon Spawner Escapement, In-river Harvest and Run-size Estimates, 1978-2016 | Technical Report | Salmon | Klamath Basin | 180102 | Klamath River Basin Fall Chinook Salmon Spawner Escapement, In-river Harvest and Run-size Estimates, 1978-2016 | Fall Chinook Salmon, Spawner Escapement, | |
2011 | Peter B. Adams, L.B. Boydstun, Sean P. Gallagher, Michael K. Lacy, Trent McDonald, Kevin E. Shaffer | Fish Bulletin 180 California Coastal Salmonid Population Monitoring: Strategy, Design and Methods | Technical Report | Monitoring Programs, Salmon | United States | California’s salmon and steelhead populations have experienced marked declines leading to listing of almost all of California’s anadromous salmonids under the California Endangered Species Act (CESA) and Federal Endangered Species Act (ESA). Both CESA and ESA listings require recovery plans that call for monitoring to provide some measure of progress toward recovery. In addition, there are related monitoring needs for other management activities such as hatchery operations and fisheries management. This California Coastal Salmonid Monitoring Plan (CMP) has been developed to meet these monitoring needs, describing the overall strategy, design, and methods used in monitoring salmonid populations. Implementation details of the plan are described in Shaffer (in prep.). The CMP uses the Viable Salmonid Population concept as the framework for plan development. The VSP conceptual framework assesses salmonid viability in terms of four key population characteristics: abundance, productivity, spatial structure, and diversity. High abundance buffers a population against both ‘normal’ and catastrophic variation due to environmental conditions and loss due to anthropogenic factors. High productivity will lead to more certain replacement when populations are placed under either natural or anthropogenic stress. Wide spatial structure reduces extinction risk due to catastrophic events and provides pathways for recolonization. Diversity in life history traits (e.g., time of spawning, juvenile life history, adult fish size, age structure, degree of anadromy, etc.) provides resilience against extinction risk from changing conditions. | California Coastal Salmonid Monitoring Plan (CMP), Endangered Species Act (ESA), California Coho Salmon Recovery Strategy, | ||
2015 | US Fish and Wildlife Service | Klamath Recovery Unit Implementation Plan for Bull Trout (Salvelinus confluentus) | Technical Report | Dam Operations, Monitoring Programs, Other threatened fishes, Upper Klamath | Klamath Basin | 180102 | This recovery unit implementation plan (RUIP) describes the threats to bull trout (Salvelinus confluentus) and the site-specific management actions necessary for recovery of the species within the Klamath Recovery Unit, including estimates of time required and cost. This document supports and complements the Recovery Plan for the Coterminous U.S. Population of Bull Trout (USFWS 2015a), which describes recovery criteria and a general range-wide recovery strategy for the species. Detailed discussion of species status and recovery actions within each of the six recovery units is provided in six RUIPs that have been developed in coordination with State, Federal, Tribal, and other conservation partners. This document incorporates our responses to public comment on the Draft Klamath RUIP (USFWS 2015b) received during the comment period from June 4 to July 20, 2015 | Implementation Plan, Klamath Recovery Unit, Bull trout, Recovery Unit Implementation Plan (RUIP), Brown trout, | |
2014 | U.S. Fish and Wildlife Service | Revised Draft Recovery Plan for the Coterminous United States Population of Bull Trout (Salvelinus confluentus) | Technical Report | Adaptive Management, Habitat Restoration, Other threatened fishes | United States | Our most recent 5-year status review for bull trout was completed on April 8, 2008, and concluded that listing the species as “threatened” remained warranted range-wide in the coterminous United States. Based on this status review, in our most recent recovery report to Congress (USFWS 2012) we reported that bull trout were generally “stable” overall range-wide (species status neither improved nor declined during the reporting year), with some core area populations decreasing, some stable, and some increasing. Since the listing of bull trout, there has been very little change in the general distribution of bull trout in the coterminous United States, and we are not aware that any known, occupied bull trout core areas have been extirpated. Additionally, since the listing of bull trout, numerous conservation measures have been and continue to be implemented across its coterminous range. These measures are being undertaken by a wide variety of local and regional partnerships, including State fish and game agencies, State and Federal land management and water resource agencies, Tribal governments, power companies, watershed working groups, water users, ranchers, and landowners. In many cases these bull trout conservation measures incorporate or are closely interrelated with work being done for recovery of salmon and steelhead, which are limited by many of the same threats. The Service has compiled a comprehensive overview of conservation actions and successes since 1999 for bull trout in each recovery unit that is referenced in this revised draft recovery plan. | Bull Trout, Salvelinus confluentus, Recovery Plan, Threatened species, Endangered Species Act, Strategic Plan, Threat Assessment Tool, | ||
2010 | Oregon Department of Fish and Wildlife | Status Klamath Rainbow/Rainbow Trout Dams in Scenario. Klamath River Rainbow Trout Peaking Reach Klamath River | Technical Report | Dam Operations, Dam Removal, Dams & Reservoirs, Redband Trout, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The purpose of this document is to provide an outline for a presentation by ODFW staff to the expert panel on redband, rainbow and bull trout which will provide input for the secretarial determination of whether to remove the four hydroelectric dams on the Klamath River. The expert panel will evaluate if the continued operation of the four main stem hydro electric facilities is in the best interest of the people of the United States and if fisheries will benefit. ODFW has compared a scenario of continuing to operate the Klamath Hydroelectric Project status quo with no reintroduction of anadromous fish versus removal of the four Klamath Hydroelectric dams, implementation of the KBRA and reintroduction and volitional re-colonization of anadromous fish. ODFW has extensive information on trout populations in the Klamath basin and will present information on how removal of the Klamath River dams and implementation of the Klamath Basin Restoration Agreement will effect the population of redband, rainbow, and bull trout. For redband trout ODFW answered the general questions for the expert panel and gave a brief summary of current status of the population and status of redband trout with KBRA implemented with dam removal. An outline was developed covering the major points affecting the health of rainbow and bull trout populations in the Upper Klamath Basin. | Anadromous fish, Klamath Basin, Redband trout, Rainbow trout, Bull trout, Hydroelectric dams, | |
2003 | Jason Dunham, Bruce Rieman, Gwynne Chandler | Influences of Temperature and Environmental Variables on the Distribution of Bull Trout within Streams at the Southern Margin of Its Range | Technical Report | Aquatic Habitat / Invertebrates / Insects, Other threatened fishes, Water Temperature | United States | The bull trout Salvelinus confluentus is believed to be among the most thermally sensitive species in coldwater habitats in western North America. We conducted a comprehensive field assessment of thermal habitat associations throughout the southern margin of the species’ range. We developed models of thermal habitat associations using two data sets representing a geographically diverse range of sites and sampling methods. In both data sets, maximum temperature was strongly associated with the distribution of bull trout. In spite of the potential biases in these data sets, model predictions were similar. In both cases, the probability of the occurrence of bull trout exceeded 50% when the maximum daily temperature was less than 14–168C, a result that is consistent with recent laboratory-based thermal tolerances. In one data set, we modeled | Bull trout, Environmental Variables, Thermal habitat | ||
2016 | Joseph R. Benjamin, Jeannie M. Heltzel, Jason B. Dunham, Michael Heck, Nolan Banish | Thermal Regimes, Nonnative Trout, and Their Influences on Native Bull Trout in the Upper Klamath River Basin, Oregon | Technical Report | Other threatened fishes, Water Temperature | Upper Klamath | 18010206 | The occurrence of fish species may be strongly influenced by a stream’s thermal regime (magnitude, frequency, variation, and timing). For instance, magnitude and frequency provide information about sublethal temperatures, variability in temperature can affect behavioral thermoregulation and bioenergetics, and timing of thermal events may cue life history events, such as spawning and migration. We explored the relationship between thermal regimes and the occurrences of native Bull Trout Salvelinus confluentus and nonnative Brook Trout Salvelinus fontinalis and Brown Trout Salmo trutta across 87 sites in the upper Klamath River basin, Oregon. Our objectives were to associate descriptors of the thermal regime with trout occurrence, predict the probability of Bull Trout occurrence, and estimate upper thermal tolerances of the trout species. We found that each species was associated with a different suite of thermal regime descriptors. Bull Trout were present at sites that were cooler, had fewer high-temperature events, had less variability, and took longer to warm. Brook Trout were also observed at cooler sites with fewer hightemperature events, but the sites were more variable and Brook Trout occurrence was not associated with a timing descriptor. In contrast, Brown Trout were present at sites that were warmer and reached higher temperatures faster, but they were not associated with frequency or variability descriptors. Among the descriptors considered, magnitude (specifically June degree-days) was the most important in predicting the probability of Bull Trout occurrence, and model predictions were strengthened by including Brook Trout occurrence. Last, all three trout species exhibited contrasting patterns of tolerating longer exposures to lower temperatures. Tolerance limits for Bull Trout were lower than those for Brook Trout and Brown Trout, with contrasts especially evident for thermal maxima. | Native Bull Trout, Nonnative Trout, Thermal influences, Brook Trout, Brown Trout, | |
2017 | Will Houston | ‘A cultural tragedy’: Karuk Tribe cuts salmon harvest to 200 fish Karuk Tribe cuts harvest; fishery council to finalize 2017 season rules | News Article | Salmon, Water Quality | Klamath Basin | 180102 | For the first time in its history, the Karuk Tribe will be limiting ceremonial salmon harvests for tribal members because of the record low forecast for returning Chinook salmon on the Klamath River. Karuk Tribal Chairman Russell “Buster” Attebery said in a Monday statement that it was his “saddest day as chairman” to announce the tribe will limit harvest for sustenance and ceremonial purposes to just 200 salmon. “This is the first time in our history that we have imposed limits on traditional dip net fishermen working to feed their extended families and tribal elders,” he stated.About 12,000 Chinook salmon are forecast to return to the Klamath River to spawn this year, which is a record low, according to the council. The Karuk Tribe states this year’s forecast represents about 10 percent of the average run size during the past three decades. Tribes and fishery scientists have attributed the low return to poor ocean conditions, drought and parasitic outbreaks in 2014 and 2015 that are estimated to have killed up to 90 percent of juvenile Chinook salmon in the river. | Karuk Tribe, Chinook salmon | |
2017 | Hank Sims | Yurok Tribe Warns of ‘Most Catastrophic Fisheries Collapse in Klamath River History’ | News Article | Salmon | Klamath Basin | 180102 | The Yurok Tribe is bracing for the far-reaching economic, cultural, and social challenges created by what is expected to be the most catastrophic fisheries collapse in the Klamath River’s history. The number of fall Chinook salmon predicted to return to the river in 2017 — approximately 11,000 fish — is the lowest on record, a result of two consecutive, juvenile fish disease outbreaks and other contributing factors. The Tribe’s 2017 allocation, set by the Pacific Fisheries Management Council, will likely be about 650 fish or one fish for every 10 Tribal members. In response to the all-time low forecast, the Yurok Tribe will not have a commercial fishery for a second year in row to protect salmon stocks. This unprecedented fisheries crash will have real consequences for the Yurok people, whose traditions, lives and livelihoods are intimately connected to the Klamath River and its salmon. A March 2016 agreement between the Tribe, States of California and Oregon, as well as dam owner PacifiCorp and other stakeholders, planned the removal of the dams by 2020. The Tribe is working hard to ensure the dam removal process continues as planned and salmon can finally return to the upper reaches of the river. If the dams are removed it will be a major step toward the restoration of the Klamath River, however it does little to address the direct social consequences attached to the looming salmon disaster. | Chinook salmon, Yurok Tribe, Fisheries collapse | |
2015 | US Fish &Wildlife Service | Technical Reference On Using Surrogate Species for Landscape Conservation | Technical Report | Adaptive Management, Habitat Restoration, Land Management & Irrigation | United States | Surrogate species have been defined as species which represent other species or aspects of the environment and are used to attain a conservation objective. Throughout the literature, one of the statements made by many authors is that the use of surrogate species is necessary. Managers cannot identify the habitat and resource needs of every species in a landscape; monitor environmental or management effects on every species; or directly monitor all of the workings, interactions and threats in the environment, so using surrogate species becomes inevitable even when it is not explicitly recognized. Inconsistent use of the terms, concepts, and definitions of surrogate species has created challenges for evaluating their usefulness and improving their effectiveness in conservation planning. There is much confusion and misuse of surrogate species terms, even within the scientific literature. Any use of a surrogate term should be accompanied with a clear definition. The most successful applications of surrogate species share (1) explicit goals for their use, (2) a careful selection process using well-defined criteria for achieving the stated goals, and (3) well designed monitoring for testing the efficacy of the approach used. In contrast, the main impediments to using surrogate species successfully have been (1) confusing terminology, (2) unclear objectives, and (3) incorrect or ambiguous implementation. For surrogate species to be effective, the concepts, goals, methodologies and specific applications of the different types of surrogate species used need to be explicit, and their intended objectives clear and measurable. | Surrogate Species, Biodiversity Assessment, Biodiversity Indicators, Ecological Integrity, Conservation | ||
2016 | NOAA | NOAA Fisheries Protected Resources Strategic Plan: 2016 – 2020 Conserving America’s Marine Protected Species | Technical Report | Aquatic Habitat / Invertebrates / Insects, Climate Change Effects, Habitat Restoration, Other threatened fishes, Redband Trout, Salmon, Steelhead/Rainbow Trout, Suckers | United States | This plan provides national-level strategic goals for the protected species management programs across National Oceanic and Atmospheric Administration (NOAA) Fisheries (this includes Protected Resources Divisions in NOAA Fisheries’ five Regional Offices), as well as strategic goals specific to the NOAA Fisheries Headquarters Office of Protected Resources. We developed these priorities in consideration of the Office of Protected Resources’ core mission in the context of current fiscal conditions and NOAA Fisheries, NOAA, and Department of Commerce (DOC) strategic plans and priorities. Over the next five years we will focus on four strategic goals. The goals align with and take advantage of our strengths and unique capabilities, guiding the work of Office of Protected Resources and the NOAA Fisheries protected resources management programs around the country (this includes Protected Resources Divisions in NOAA Fisheries’ five Regional Offices). We have determined our focus on these goals will make the biggest difference to our recovery and conservation mission given our expertise and current and emerging needs. The four goals are: | Endangered species, National Protected Resources Goals, Resource Management, EPA, MMPA | ||
2015 | US Fish and Wildlife Service | Strategic Plan for the U.S. Fish and Wildlife Service Fish and Aquatic Conservation Program: FY2016-2020 | Technical Report | Aquatic Habitat / Invertebrates / Insects, Habitat Restoration, Salmon | United States | This Strategic Plan for the U.S. Fish and Wildlife Service Fish and Aquatic Conservation Program: FY2016-2020 (Plan) is built around seven core goals: Each of these goals acknowledges the specific and very real challenges we face today in achieving our mission. Each goal also contains specific objectives and related strategies to address those challenges and achieve measurable conservation successes. The Plan builds upon prior FAC Strategic Plans and the recommendations of the Sport Fishing and Boating Partnership Council (SFBPC), contained in their report, Strategic Vision for Fish and Aquatic Resource Conservation in the Fish and Wildlife Service: A Partnership Perspective, and provided to the Service in July 2013. This report resulted from a collaborative visioning effort conducted by the SFBPC on behalf of the FAC program. | Conservation, Aquatic Invasive Species, Restoration | ||
2016 | William D. Ruckelshaus Center | Columbia River Basin Salmon and Steelhead Long-Term Recovery Situation Assessment | Academic Article, Technical Report | Salmon, Steelhead/Rainbow Trout | United States | The Assessment Team conducted 206 semi-structured interviews with individuals selected for their knowledge of, engagement in, and/or concern for salmon recovery planning in the Basin. The overall goal of the assessment and this report is to provide a summary of key themes, issues and perspectives identified from the interviews, and to describe potential process options to better achieve desired outcomes regarding longterm salmon and steelhead recovery in the Basin. This report begins with an explanation of the assessment process, followed by a brief overview of recovery processes in the Basin. The report then presents a synthesis of information gained through the interviews, focusing on key themes. The last section presents a conceptual framework for assessing the salmon recovery system, along with key findings and process options for improving the system and addressing salmon and steelhead recovery in the long term. Supplemental information is provided in appendices. The centers are making this assessment available to NOAA Fisheries and all other interested parties, in the hope that it helps inform discussions about longterm salmon and steelhead recovery processes in the Basin by providing options to consider, updated information, and a “bird’s eye view” of a complex policy environment the team learned few see in its entirety. | Salmon, Steelhead, Long-term Recovery, Conceptual Framework, | ||
2016 | The Oregon Conservation Strategy | The Oregon Conservation Strategy | Website | Aquatic Habitat / Invertebrates / Insects, Habitat Restoration, Monitoring Programs | United States | The Oregon Conservation Strategy is a blueprint for conservation in Oregon. The Oregon Conservation Strategy (also referred to as the Conservation Strategy or Strategy) is an overarching state strategy for conserving fish and wildlife. It provides a shared set of priorities for addressing Oregon’s conservation needs. The Conservation Strategy brings together the best available scientific information, and presents a menu of recommended voluntary actions and tools for all Oregonians to define their own conservation role. The goals of the Conservation Strategy are to maintain healthy fish and wildlife populations by maintaining and restoring functioning habitats, preventing declines of at-risk species, and reversing declines in these resources where possible. | monitoring, conservation, habitat restoration | ||
2013 | Tamara M. Wood, Susan A. Wherry, James L. Carter, James S. Kuwabara, Nancy S. Simon, Stewart A. Rounds | Technical Evaluation of a Total Maximum Daily Load Model for Upper Klamath Lake, Oregon | Technical Report | Water Quality | Upper Klamath | 18010206 | We reviewed a mass balance model devel-oped in 2001 that guided establishment of the phosphorus total maximum daily load (TMDL) for Upper Klamath and Agency Lakes, Oregon. The purpose of the review was to evaluate the strengths and weaknesses of the model and to de-termine whether improvements could be made using information derived from studies since the model was first developed. The new data have contributed to the understanding of processes in the lakes, particularly internal loading of phos-phorus from sediment, and include measurements of diffusive fluxes of phosphorus from the bottom sediments, groundwater advection, desorption from iron oxides at high pH in a laboratory set-ting, and estimates of fluxes of phosphorus bound to iron and aluminum oxides. None of these pro-cesses in isolation, however, is large enough to account for the episodically high values of whole-lake internal loading calculated from a mass bal-ance, which can range from 10 to 20 milligrams per square meter per day for short periods. The possible role of benthic invertebrates in lake sediments in the internal loading of phospho-rus in the lake has become apparent since the development of the TMDL model. Benthic inver-tebrates can increase diffusive fluxes several-fold through bioturbation and biodiffusion, and, if the invertebrates are bottom feeders, they can recycle phosphorus to the water column through metabol-ic excretion. These organisms have high densities (1,822–62,178 individuals per square meter) in Upper Klamath Lake. Conversion of the mean density of tubificid worms (Oligochaeta) and chi-ronomid midges (Diptera), two of the dominant taxa, to an areal flux rate based on laboratory measurements of metabolic excretion of two abundant species suggested that excretion by ben-thic invertebrates is at least as important as any of the other identified processes for internal loading to the water column. | TMDL, Upper Klamath Lake | |
2015 | Susan A. Wherry, Tamara M. Wood, Chauncey W. Anderson | Revision and Proposed Modification of a Total Maximum Daily Load Model for Upper Klamath Lake, Oregon | Technical Report | Water Quality | Upper Klamath | 18010206 | This report presents Phase 2 of the review and development of the mass balance water-quality model, originally developed in 2001, that guided establishment of the phosphorus (P) total maximum daily load (TMDL) for Upper Klamath and Agency Lakes, Oregon. The purpose of Phase 2 was to incorporate a longer (19-year) set of external phosphorus loading data into the lake TMDL model than had originally been available, and to develop a proof-of-concept method for modeling algal mortality and the consequent decrease in chlorophyll a that had not been possible with the 2001 TMDL model formulation. Using the extended 1991–2010 external phosphorus loading dataset, the lake TMDL model was recalibrated following the same procedures outlined in the Phase 1 review. The version of the model selected for further development incorporated an updated sediment initial condition, a numerical solution method for the chlorophyll a model, changes to light and phosphorus factors limiting algal growth, and a new pH-model regression, which removed Julian day dependence in order to avoid discontinuities in pH at year boundaries. This updated lake TMDL model was recalibrated using the extended dataset in order to compare calibration parameters to those obtained from a calibration with the original 7.5-year dataset. The resulting algal settling velocity calibrated from the extended dataset was more than twice the value calibrated with the original dataset, and, because the calibrated values of algal settling velocity and recycle rate are related (more rapid settling required more rapid recycling), the recycling rate also was larger than that determined with the original dataset. These changes in calibration parameters highlight the uncertainty in critical rates in the Upper Klamath Lake TMDL model and argue for their direct measurement in future data collection to increase confidence in the model predictions. | TMDL, Upper Klamath Lake | |
2012 | William W. Walker, Jeffrey D. Walker, Jacob Kann, | Evaluation of Water and Nutrient Balances for the Upper Klamath Lake Basin in Water Years 1992-2010. | Technical Report | Water Quality | Upper Klamath | 18010206 | Upper Klamath and Agency Lakes (UKL) comprise a large, shallow, hypereutrophic lake system located in south-central Oregon that is seasonally dominated by large blooms of the nitrogen-fixing cyanobacterium Aphanizomenon flos-aquae. Bloom-driven water quality degradation that includes extended periods of low dissolved oxygen, elevated pH, and toxic levels of un-ionized ammonia has been associated with the decline of native endangered fish populations, including the Federally Listed shortnose (Chasmistes brevirostris) and Lost River (Deltistes luxatus) suckers. More specifically these conditions have been linked to large die-offs and redistribution of the endangered sucker species in UKL. Several studies have documented that recurring algal blooms and their decline are associated with periods of elevated pH, toxic levels of un-ionized ammonia, and depressed dissolved oxygen concentrations. Based on exceedances of water quality standards for dissolved oxygen, pH, and chlorophyll (algal biomass), both lakes were designated as water quality limited for resident fish and aquatic life. | Nutrient Balances, TMDL, Lake Dynamics, | |
2016 | Reclamation (Bureau of Reclamation) | SECURE Water Act Section 9503(c)— Reclamation Climate Change and Water 2016 | Technical Report | Climate Change Effects, Hydrology, Water Allocation & Rights | United States, Klamath Basin | 180102 | Chapter 5: Klamath River Basin. This summary chapter is part of the 2016 SECURE Water Act Report to Congress prepared by the Bureau of Reclamation (Reclamation) in accordance with Section 9503 of the SECURE Water Act. The 2016 SECURE Water Act Report follows and builds on the first SECURE Water Act Report, submitted to Congress in 2011,1 which characterized the impacts of warmer temperatures, changes to precipitation and snowpack, and changes to the timing and quantity of streamflow runoff across the West. This chapter provides a basin-specific summary for the Klamath River Basin. The key study referred to in this chapter is the Klamath River Basin Study, which is being conducted through a partnership between Reclamation, Oregon’s Water Resources Department, and California’s Department of Water Resources to identify strategies to address current and future water demands in the basin. The Klamath River Basin Study is anticipated to be available in 2016. Because the Klamath River Basin Study is not yet complete, portions of this chapter are limited to a description of ongoing activities rather than final results. Additional information relevant to the Klamath River Basin, including the latest climate and hydrology projections for the basin, is included in Chapter 2: Hydrology and Climate Assessment. | Climate Change, Trinity Dam, Lewiston Dam, Clear Lake Dam, Gerber Dam, Link River Dam, Resource management, | |
2013 | William T. Peterson, Cheryl A. Morgan, Jay O. Peterson, Jennifer L. Fisher, Brian J. Burke, Kurt Fresh | Ocean Ecosystem Indicators of Salmon Marine Survival in the Northern California Current | Technical Report | Salmon, Water Temperature | United States | As many scientists and salmon managers have noted, variations in marine survival of salmon often correspond with periods of alternating cold and warm ocean conditions. For example, cold conditions are generally good for Chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon, whereas warm conditions are not. These pages are based on our annual report of how physical and biological ocean conditions may affect the growth and survival of juvenile salmon in the northern California Current off Oregon and Washington. We present a number of physical, biological, and ecosystem indicators to specifically define the term "ocean conditions." More importantly, these metrics can be used to forecast the survival of salmon 1–2 years in advance. This information is presented for the non–specialist; additional detail is provided via links when possible. | Chinook Salmon, Coho Salmon, Ocean Ecosystem Indicators, Biological indicators, | ||
2000 | David L. Perkins, Jacob Kann, G. Gary Scoppettone | The Role of Poor Water Quality and Fish Kills in the Decline of Endangered Lost River and Shortnose Suckers in Upper Klamath Lake | Technical Report | Suckers, Upper Klamath, Water Quality, Water Temperature | Upper Klamath, Lost River | 18010206 | Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) suckers are federally endangered species endemic to shallow lakes of the Upper Klamath River Basin in Oregon and California. Upper Klamath Lake represents the majority of the remaining habitat of these suckers, but has been a site of intermittent fish kills. We studied fish kills and associated water quality dynamics in the lake in 1995, 1996, and 1997 to determine factors responsible for dieoffs. Over 7,000 dead suckers were collected in the three years, and 85% of annual collections occurred during a 15-20 day period that began between mid August and late September. Suckers collected during the fish kills, as well as live fish captured the following spring, had a high incidence of afflictions such as parasitic and bacterial infections, cysts, and ulcers. The 1995 and 1996 fish kills were biased toward larger species (suckers), and larger individuals within species. Water quality in the lake was largely influenced by the dynamics of the bluegreen algae Aphanizomenon flos-aquae, which comprised over 90% of algal biomass. Associated with each fish kill was an extended period of water column stability and high algal biomass (>150 μg L-1 chlorophyll a) before the kills, followed by a well-mixed water column and algal collapse with little residual algae. Before the kills, algal photosynthesis caused high pH (9-10) for 30-90 days, which maintained a large proportion of the total ammonia in the toxic, unionized form (200-2000 μg L-1 NH3). Algal collapse decreased photosynthesis and increased biological oxygen demand, leading to dissolved oxygen levels less than 4.0 mg/l throughout the water column for 10-24 hours a day, for up to several days. Fish mortality coincided with algal bloom collapse and continued for 20-30 days after the period of low dissolved oxygen. We concluded that hypoxia, caused by the collapse of A. flos-aquae blooms, was the primary mechanism that triggered the 1995-97 fish kills. | Suckers, Water temperature, Disease, Fish Kills, Water quality, | |
2017 | State of Oregon of Environmental Quality | Upper Klamath and Lost River Subbasins TMDL Chapter 2: Klamath River Dissolved Oxygen, Chlorophyll a, pH, and Ammonia Toxicity | Technical Report | Adaptive Management, Hydrology, Redband Trout, Salmon, Suckers, Water Quality | Upper Klamath, Lost River | 18010206 | The Upper Klamath Subbasin and Lost River Subbasin Total Maximum Daily Loads (TMDLs) and Water Quality Implementation Plan (WQMP) establish water quality goals for waterbodies in these two subbasins which are within the Klamath Basin. The WQMP lays out steps toward meeting these goals. Water quality improvement programs that lead to TMDL attainment will advance Oregon's commitment to protecting beneficial uses in compliance with State and Federal Law. To accomplish this, the State has promoted a path that progresses towards water quality standard compliance, with protection of the beneficial uses of waters of the State as the primary goal. It is anticipated that facilities, sectors and management agencies will utilize this TMDL to develop and/or alter water quality management efforts. In addition, this TMDL should be used to track water quality, instream physical parameters and landscape conditions through time. This report presents the Upper Klamath and Lost River Subbasins TMDL. It addresses the elements of a TMDL required by the U.S. Environmental Protection Agency (EPA). These elements include: | Total Maximum Daily Loads (TMDLs), Upper Klamath, Lost River, Water quality, | |
2013 | National Marine Fisheries Service, U.S. Fish and Wildlife Service | Biological Opinions on the Effects of Proposed Klamath Project Operations from May 31, 2013, through March 31, 2023, on Five Federally Listed Threatened and Endangered Species | Technical Report | Climate Change Effects, Dam Operations, Salmon, Suckers | Klamath Basin | 180102 | The Klamath Basin’s hydrologic system currently consists of a complex of interconnected rivers, canals, lakes, marshes, dams, diversions, wildlife refuges, and wilderness areas. Alterations to the natural hydrologic system began in the late 1800s and expanded in the early 1900s, including water diversions by private water users, Reclamation’s Project, and several hydroelectric dams operated by a private company, currently known as PacifiCorp. PacifiCorp’s Klamath Hydroelectric Project (KHP) was constructed between 1911 and 1962, and includes eight developments: (1) East and (2) West Side power facilities at Link River Dam; (3) Keno Dam; (4) J.C. Boyle Dam; (5) Copco 1 Dam; (6) Copco 2 Dam; (7) Fall Creek Dam; and (8) Iron Gate Dam (IGD). The Link River Dam and Upper Klamath Lake (UKL) are not part of the KHP. PacifiCorp operated the KHP under a 50-year license issued by the Federal Energy Regulatory Commission (FERC) until the license expired in 2006. PacifiCorp continues to operate the KHP under annual licenses based on the terms of the previous license. In 2001, the Services issued BiOps on the effects of Reclamation’s Project operations on listed species, and concluded that the proposed Project operations would likely jeopardize the continued existence of the Lost River sucker (LRS) and the shortnose sucker (SNS) in UKL (USFWS 2001) and the Southern Oregon/Northern California Coast (SONCC) coho salmon Evolutionarily Significant Unit (ESU) (NMFS 2001a). Because of a severe drought in 2001 and the jeopardy BiOps, Reclamation limited the volume of water delivered to Project agricultural users, and to the Lower Klamath and Tule Lake National Wildlife Refuges. | Shortnose sucker, Lost River sucker, Green sturgeon, Coho Salmon, Eulachon, Conservation, Critical Habitat | |
2008 | Katharine Carter, Steve Kirk, North Coast Regional Water Quality Control Board | Appendix 5 Fish and Fishery Resources of the Klamath River Basin | Technical Report | Dam Operations, Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The Klamath River basin contains 83 species of fish, 45 of which are native to the Klamath drainage and 38 that have been introduced and are non-native. Fourteen of the native fish species in the basin have been granted special federal and/or state status. The following discussion of fish species and resources in the basin is divided into three parts: fish species found above Iron Gate Dam in California and Oregon, fish species found from Iron Gate Dam to the Ocean in California, and Chinook, steelhead, and coho salmonids from Iron Gate Dam to the Ocean in California. | North Coast Regional Water Quality Control Board, Fall Chinook Salmon, Steelhead Trout, Spring Chinook Salmon, Coho Salmon, Iron Gate Dam | |
2009 | Kathryn Kostow | Factors that contribute to the ecological risks of salmon and steelhead hatchery programs and some mitigating strategies | Technical Report | Salmon, Steelhead/Rainbow Trout | United States | State and federal agencies in the United States annually release millions of hatchery salmon and steelhead into public waters. Many of the hatchery programs are located in areas where the wild populations are now listed under the U.S. Endangered Species Act (ESA) (16 U.S.C. §§ 1531–1544). These hatchery programs pose genetic and ecological risks to wild fish populations. Genetic risks occur when hatchery and wild fish interbreed and usually occur within a taxonomic species. Ecological risks occur when the presence of hatchery fish affects how wild fish interact with their environment or with other species and may affect whole species assemblages. This paper reviews some of the factors that contribute to ecological risks. Important contributing factors include the relative abundance of hatchery and wild fish in natural production areas, hatchery programs that increase density-dependant mortality, residual hatchery fish, some physical advantages that hatchery fish can have over wild fish, and life history characteristics that may make some species especially vulnerable to the effects of ecological risks. Many of these risk factors can be mitigated by management activities that reduce the level of interactions between hatchery and wild fish. This paper concludes by recommending twelve mitigation strategies that may be useful when agencies need to bring hatchery programs into compliance with the take provisions of the ESA. | Salmon, Steelhead, Hatchery, Ecology, Risk | ||
2004 | J.M. Eilers, J. Kann, J. Cornett, K.Moser, St.Amand | Paleolimnological evidence of change in a shallow, hypereutrophic lake: Upper Klamath Lake, Oregon, USA | Technical Report | Sediment & Geomorphology, Upper Klamath, Water Quality | Upper Klamath | 18010206 | Sediment cores were collected from Upper Klamath Lake in October, 1998 and analyzed for 210Pb, 14C, 15N, N, P, C, Ti, Al, diatoms, Pediastrum, and cyanobacterial akinetes. These results were used to reconstruct changes in water quality in Upper Klamath Lake over the last 150 years. The results showed that there was substantial mixing of the upper 10 cm of sediment, representing the previous 20 to 30 years. However, below that, 210Pb activity declined monotonically, allowing reasonable dating for the period from about 1850 to 1970. The sediment accumulation rates (SAR) showed a substantial increase in the 20th century. The increase in SAR corresponded with increases in erosional input from the watershed as represented by the increases in sediment concentrations of Ti and Al. The upper 20 cm of sediment, representing the last 150 years, also showed increases in C, N, P, and 15N. The increases in nutrient concentrations may be affected to various degrees by diagenetic reactions within the sediments, although the changes in concentrations also were marked by changes in the N:P ratio and in a qualitative change in the source of N as reflected in increasing δ15N. The diatoms showed modest changes in the 20th century, with increases in Asterionella formosa, Stephanodiscus hantzschii, and S. parvus. Pediastrum, a green alga, was well-preserved in the sediments and exhibited a sharp decline in relative abundance in the upper sediments. Total cyanobacteria, as represented by preserved akinetes, exhibited only minor changes in the last 1000 years. However, Aphanizomenon flos-aquae, a taxon which was formerly not present in the lake 150 years ago, but that now dominates the summer phytoplankton, has shown major increases over the past 100 years. The changes in sediment composition are consistent with activities including timber harvest, drainage of wetlands, and agricultural activities associated with livestock grazing, irrigated cropland, and hydrologic modifications. | Paleolimnology, Aphanizomenon flos-aquae, akinetes, Upper Klamath Lake | |
2008 | Stephen R. Carpenter | Phosphorus control is critical to mitigating eutrophication | Academic Article | Water Quality | United States | The Midwest floods of 2008 added more than just water to the region’s lakes, reservoirs, and rivers. Runoff from farms and towns carries a heavy load of silt, nutrients, and other pollutants. The nutrients trigger blooms of algae, which taint drinking water. Death and decay of the algae depletes oxygen, kills fish and bottom-dwelling animals, and thereby creates ‘‘dead zones’’ in the body of water. The syndrome of excessive nutrients, The cure sounds simple: decrease inputs of nutrients, especially nitrogen (N) and phosphorus (P). But which nutrient, Human activity has greatly increased the inputs of reactive N and P to the biosphere. Reactive N (biologically active forms such as nitrate, ammonia, or organic N compounds, in contrast to N2 gas, which is not used by organisms except for a few nitrogen-fixing species) is supplied by natural sources, as well as by human activities such as industrial N2 fixation, combustion, and planting of soybeans and other N2-fixing crops. Global flux of reactive N to the biosphere from food production has increased from 15 Tg N year1 in 1860 to 187 Tg N year1 in 2005 (2). Additional reactive N is fixed for industrial or household use or is inadvertently created as a byproduct of fossil fuel combustion. Excess reactive N enters groundwater, surface water, or the atmosphere. | Water quality, Eutrophication | ||
2009 | By Kurt D. Carpenter, Daniel T. Snyder, John H. Duff, Frank J. Triska, Karl K. Lee, Ronald J. Avanzino, Steven Sobieszczyk | Hydrologic and Water-Quality Conditions During Restoration of the Wood River Wetland, Upper Klamath River Basin, Oregon, 2003–05 | Technical Report | Hydrology, In-Stream Flow / Flow Regime, Water Quality | Upper Klamath | 18010206 | Restoring previously drained wetlands is a strategy currently being used to improve water quality and decrease nutrient loading into Upper Klamath Lake, Oregon. In this 2003–05 study, ground- and surface-water quality and hydrologic conditions were characterized in the Wood River Wetland. Nitrogen and phosphorus levels, primarily as dissolved organic nitrogen and ammonium (NH4) and soluble reactive phosphorus (SRP), were high in surface waters. Dissolved organic carbon concentrations also were elevated in surface water, with median concentrations of 44 and 99 milligrams of carbon per liter (mg-C/L) in the North and South Units of the Wood River Wetland, respectively, reaching a maximum of 270 mg-C/L in the South Unit in late autumn. Artesian well water produced NH4 and SRP concentrations of about 6,000 micrograms per liter (μg/L), and concentrations of 36,500 μg-N/L NH4 and 4,110 μg-P/L SRP in one 26–28 ft deep piezometer well. Despite the high ammonium concentrations, the nitrate levels were moderate to low in wetland surface and ground waters. The surface-water concentrations of NH4 and SRP increased in spring and summer, outpacing those for chloride (a conservative tracer), indicative of evapoconcentration. In-situ chamber experiments conducted in June and August 2005 indicated a positive flux of NH4 and SRP from the wetland sediments. Potential sources of NH4 and SRP include diffusion of nutrients from decomposed peat, decomposing aquatic vegetation, or upwelling ground water. In addition to these inputs, evapoconcentration raised surface-water solute concentrations to exceedingly high values by the end of summer. The increase was most pronounced in the South Unit, where specific conductance reached 2,500 μS/cm and median concentrations of total nitrogen and total phosphorus reached 18,000–36,500 μg-N/L and about 18,000–26,000 μg-P/L, respectively. | Hydrologic conditions, Water quality, Upper Klamath | |
2003 | Mike Turaski, The Bureau of Land Management (BLM) | 2002 and 2003 Upper Klamath River Water Temperature Monitoring | Technical Report | Upper Klamath, Water Temperature | Upper Klamath | 18010206 | The Bureau of Land Management (BLM) conducted water temperature monitoring at various sites in the Klamath River in 2003 and 2003. The objectives of this effort were to (1) characterize spatial and seasonal trends water temperature trends in the Upper Klamath Wild and Scenic River and adjacent river reaches and (2) provide high quality water temperature data for use by stakeholders in the ongoing FERC relicensing and TMDL processes. In addition to summaries of the water temperature data, two other data sets are presented in this report. Instantaneous (collected every 30 minutes) and average daily streamflow is monitored by the USGS, and is provided herein to provide context for interpreting water temperature trends. Air temperature was monitored by the BLM at the USGS stream gauge. This data also helps explain observed water temperatures. | Water Temperature, Air Temperature, The Bureau of Land Management (BLM), Upper Klamath | |
2015 | Damon H. Goodman, Nicholas A. Som, Justin Alvarez, Aaron Martin | A mapping technique to evaluate age-0 salmon habitat response from restoration | Technical Report | Habitat Restoration, Salmon | Lower Klamath, Trinity River | 18010209 | To combat decades of anthropogenic degradation, restoration programs seek to improve ecological conditions through habitat enhancement. Rapid assessments of condition are needed to support adaptive management programs and improve the understanding of restoration effects at a range of spatial and temporal scales. Previous attempts to evaluate restoration practices on large river systems have been hampered by assessment tools that are irreproducible or metrics without clear connections to population responses. We modified a demonstration flow assessment approach to assess the realized changes in habitat quantity and quality attributable to restoration effects.We evaluated the technique’s ability to predict anadromous salmonid habitat and survey reproducibility on the Trinity River in northern California. Fish preference clearly aligned with a priori designations of habitat quality: the odds of observing rearing Chinook or coho salmon within high-quality habitats ranged between 10 and 16 times greater than low qualities, and in all cases the highest counts were associated with highest quality habitat. In addition, the technique proved to be reproducible with “substantial” to “almost perfect” agreement of results from independent crews, a considerable improvement over a previous demonstration flow assessment. These results support the use of the technique for assessing changes in habitat from restoration efforts and for informing adaptive management decisions. | Demonstration Flow Assessment, Habitat Modeling, Habitat Validation, Restoration Effectiveness Monitoring | |
2015 | Megan Rocha, Karuk Department of Natural Resources | Karuk Department of Natural Resources Strategic Plan for Organizational Development | Technical Report | Aquatic Habitat / Invertebrates / Insects, Habitat Restoration, Salmon, Water Quality | Mid Klamath | 18010209 | The Karuk Department of Natural Resources has completed a strategic planning process to address organizational needs focused on staffing capacity and infrastructure. This planning process has involved all management-level staff within the Department to ensure all program area needs can be adequately addressed and the expertise of staff could be leveraged. DNR has grown tremendously since inception in 1989, from a single employee to a department that has exceeded a hundred (100) employees during wildland fire events. This plan provides a strategy-based approach to reorganize the existing capacity in a manner that enhances efficiencies and opportunities for synergy. This includes structural reorganization at both programmatic and staffing levels. The outcome is three (3) Branches within the Department: a) Administrative Operations and Development; b) Eco-Cultural Revitalization; and c) Watersheds, as well as Programs within each that can address identified programmatic and functional areas. Moreover, this plan provides a clear path for projected growth and development based on identified needs and opportunities, both for staffing and infrastructure. Infrastructure needs and growth at a centralized location in Orleans has been developed into a Master Site Plan, preliminary design renderings, a cost estimate that can be used to pursue facilities funding development. With this plan, the Karuk Department of Natural Resources has taken a proactive and inclusive approach to develop a strategy-based plan for the next five (5) years that will allow for the Mission of the Department to be met in a more comprehensive manner. | Strategic Plan, Action Plan, Evaluation Plan, Karuk Tribal Council, Air Quality, Cultural Resources, Enforcement/Regulation, Environmental Education, Environmental Justice, Fisheries, Watershed Restoration, Water Quality | |
2013 | Dana E. Weigel, Patrick J. Connolly, Madison S. Powell | The impact of small irrigation diversion dams on the recent migration rates of steelhead and redband trout (Oncorhynchus mykiss) | Technical Report | Redband Trout, Steelhead/Rainbow Trout | United States | Barriers to migration are numerous in stream environments and can occur from anthropogenic activities (such as dams and culverts) or natural processes (such as log jams or dams constructed by beaver (Castor canadensis)). Identification of barriers can be difficult when obstructions are temporary or incomplete providing passage periodically. We examine the effect of several small irrigation diversion dams on the recent migration rates of steelhead (Oncorhynchus mykiss) in three tributaries to the Methow River, Washington. The three basins had different recent migration patterns: Beaver Creek did not have any recent migration between sites, Libby Creek had two-way migration between sites and Gold Creek had downstream migration between sites. Sites with migration were significantly different from sites without migration in distance, number of obstructions, obstruction height to depth ratio and maximum stream gradient. When comparing the sites without migration in Beaver Creek to the sites with migration in Libby and Gold creeks, the number of obstructions was the only significant variable. Multinomial logistic regression identified obstruction height to depth ratio and maximum stream gradient as the best fitting | Migration, Isolation by resistance, Isolation by distance, Landscape genetics, Steelhead | ||
2015 | Jonathan A. Warrick, Jennifer A. Bountry, Amy E. East, Christopher S. Magirl, Timothy J. Randle, Guy Gelfenbaum, Andrew C. Ritchie, George R. Pess Vivian Leung, Jeffrey J. Duda | Large-scale dam removal on the Elwha River, Washington, USA: Source-to-sink sediment budget and synthesis | Technical Report | Dam Removal | United States | Understanding landscape responses to sediment supply changes constitutes a fundamental part of many problems in geomorphology, but opportunities to study such processes at field scales are rare. The phased removal of two large dams on the Elwha River, Washington, exposed 21 ± 3 million m3, or ~30 million tonnes (t), of sediment that had been deposited in the two former reservoirs, allowing a comprehensive investigation of watershed and coastal responses to a substantial increase in sediment supply. Here we provide a source-to-sink sediment budget of this sediment release during the first two years of the project (September 2011–September 2013) and synthesize the geomorphic changes that occurred to downstream fluvial and coastal landforms. Owing to the phased removal of each dam, the release of sediment to the river was a function of the amount of dam structure removed, the progradation of reservoir delta sediments, exposure of more cohesive lakebed sediment, and the hydrologic conditions of the river. The greatest downstream geomorphic effects were observed after water bodies of both reservoirs were fully drained and fine (silt and clay) and coarse (sand and gravel) sediments were spilling past the former dam sites. After both dams were spilling fine and coarse sediments, river suspended-sediment concentrations were commonly several thousand mg/L with ~50% sand during moderate and high river flow. At the same time, a sand and gravel sediment wave dispersed down the river channel, filling channel pools and floodplain channels, aggrading much of the river channel by ~1 m, reducing river channel sediment grain sizes by ~16-fold, and depositing ~2.2million m3 of sand and gravel on the seafloor offshore of the rivermouth. | Dam removal, Sediment budget, River restoration, Elwha River, Sediment wave | ||
2015 | Christopher M. Tonra, Kimberly Sager-Fradkin, Sarah A. Morley, Jeffrey J. Duda, Peter P. Marra | The rapid return of marine-derived nutrients to a freshwater food web following dam removal | Technical Report | Dam Removal | United States | Damremoval is increasingly being recognized as a viable river restoration action. Although themain beneficiaries of restored connectivity are often migratory fish populations, little is known regarding recovery of other parts of the freshwater foodweb, particularly terrestrial components.Wemeasured stable isotopes in key components to the freshwater food web: salmon, freshwater macroinvertebrates and a river specialist bird, American dipper (Cinclus mexicanus), before and after removal of the Elwha Dam,WA, USA. Less than a year after dam removal, salmon returned to the systemand released marine-derived nutrients (MDN). In that same yearwe documented an increase in stable-nitrogen and carbon isotope ratios in American dippers. These results indicate that MDN from anadromous fish, an important nutrient subsidy that crosses the aquatic–terrestrial boundary, can return rapidly to food webs after dams are removed which is an important component of ecosystem recovery. | American dipper, Cinclus mexicanus, Elwha River, Salmon, Stable isotopes, Oncorhynchus spp. | ||
2016 | K. F. Tiffan, J. R. Hatten, D. A. Trachtenbarg | Assessing Juvenile Salmon Rearing Habitat and Associated Predation Risk in a Lower Snake River Reservoir | Technical Report | Salmon | United States | Subyearling fall Chinook salmon (Oncorhynchus tshawytscha) in the Columbia River basin exhibit a transient rearing strategy and depend on connected shoreline habitats during freshwater rearing. Impoundment has greatly reduced the amount of shallow-water rearing habitat that is exacerbated by the steep topography of reservoirs. Periodic dredging creates opportunities to strategically place spoils to increase the amount of shallow-water habitat for subyearlings while at the same time reducing the amount of unsuitable area that is often preferred by predators. We assessed the amount and spatial arrangement of subyearling rearing habitat in Lower Granite Reservoir on the Snake River to guide future habitat improvement efforts. A spatially explicit habitat assessment was conducted using physical habitat data, two-dimensional hydrodynamic modelling and a statistical habitat model in a geographic information system framework. We used field collections of subyearlings and a common predator [smallmouth bass (Micropterus dolomieu)] to draw inferences about predation risk within specific habitat types. Most of the high-probability rearing habitat was located in the upper half of the reservoir where gently sloping landforms created low lateral bed slopes and shallow-water habitats. Only 29% of shorelines were predicted to be suitable (probability >0.5) for subyearlings, and the occurrence of these shorelines decreased in a downstream direction. The remaining, less suitable areas were composed of low-probability habitats in unmodified (25%) and riprapped shorelines (46%). As expected, most subyearlings were found in high-probability habitat, while most smallmouth bass were found in low-probability locations. However, some subyearlings were found in low-probability habitats, such as riprap, where predation risk could be high. Given their transient rearing strategy and dependence on shoreline habitats, subyearlings could benefit from habitat creation efforts in the lower reservoir | Habitat, Fall Chinook Salmon, Smallmouth bass, Snake River, Modelling, Predation, Riprap, Lower Granite Reservoir | ||
2014 | G. R. Pess, T. P. Quinn, S. R. Gephard, R. Saunders | Re-colonization of Atlantic and Pacific rivers by anadromous fishes: linkages between life history and the benefits of barrier removal | Technical Report | Aquatic Habitat / Invertebrates / Insects, Habitat Restoration, Salmon | United States | The last two decades have seen a rapid increase in barrier removals on rivers of the Northern Hemisphere, often for the explicit purpose of expanding the abundance, spatial distribution, and life history diversity of migratory fishes. However, differences in life history such as seasonal timing of migration and reproduction, iteroparity versus semelparity, and the extent of natal homing are likely to affect the capacity | Anadromous, Life history, Dam removal, Conservation, Homing, Restoration | ||
2016 | J. R. Hatten, T. R. Batt, J. J. Skalicky, R. Engle, G. J. Barton, R. L. Fosness, J. Warren | Effects of dam removal on Tule Fall Chinook Salmon spawning habitat in the White Salmon river, Washington | Technical Report | Aquatic Habitat / Invertebrates / Insects, Dam Removal, Habitat Restoration, Salmon | United States | Condit Dam is one of the largest hydroelectric dams ever removed in the USA. Breached in a single explosive event in October 2011, hundreds-of-thousands of cubic metres of sediment washed down the White Salmon River onto spawning grounds of a threatened species, Columbia River tule fall Chinook salmon Oncorhynchus tshawytscha. We investigated over a 3-year period (2010–2012) how dam breaching affected channel morphology, river hydraulics, sediment composition and tule fall Chinook salmon (hereafter ‘tule salmon’) spawning habitat in the lower 1.7 km of the White Salmon River (project area). As expected, dam breaching dramatically affected channel morphology and spawning habitat due to a large load of sediment released from Northwestern Lake. Forty-two per cent of the project area that was previously covered in water was converted into islands or new shoreline, while a large pool near the mouth filled with sediments and a delta formed at the mouth. A two-dimensional hydrodynamic model revealed that pool area decreased 68.7% in the project area, while glides and riffles increased 659% and 530%, respectively. A spatially explicit habitat model found the mean probability of spawning habitat increased 46.2% after dam breaching due to an increase in glides and riffles. Shifting channels and bank instability continue to negatively affect some spawning habitat as sediments continue to wash downstream from former Northwestern Lake, but 300m of new spawning habitat (river kilometre 0.6 to 0.9) that formed immediately postbreach has persisted into 2015. Less than 10% of tule salmon have spawned upstream of the former dam site to date, but the run sizes appear healthy and stable. Published 2015. This article is a U.S. Government work and is in the public domain in the USA. | fall run chinook, dam removal, spawning habitat | ||
2013 | Karl D. Burton , Larry G. Lowe , Hans B. Berge , Heidy K. Barnett, Paul L. Faulds | Comparative Dispersal Patterns for Recolonizing Cedar River Chinook Salmon above Landsburg Dam, Washington, and the Source Population below the Dam | Technical Report | Salmon | United States | Anadromous salmonid populations are particularly vulnerable tomigration blockages, such as dams and culverts, because access to historic spawning and rearing habitats is prevented. The process of salmonid recolonization has not been well documented for river systems where anthropogenic migration barriers have been removed or where fish passage facilities have been constructed. In September 2003, Seattle Public Utilities completed construction of a fish passage facility that circumvented Landsburg Dam on the Cedar River,Washington. Chinook Salmon Oncorhynchus tshawytscha spawned in newly availablemain-stem habitats immediately after fish passage facility construction and in all subsequent years. Further dispersal into tributary habitats occurred 5 years after construction. Redds tended to be concentrated in the downstream third of the available habitat above the dam, although some fish did utilize suitable spawning sites throughout the main stem, even in the uppermost reaches of the newly available habitat. Median spawn timing for redds observed above the dam was not significantly different from spawn timing for the source population, indicating that migration delays through the fish passage facility were minimal. Male Chinook Salmon consistently outnumbered females, with annual sex ratios ranging from 1.3:1 to 4.7:1. Chinook Salmon spawning above the dam contributed between 2.7% and 14.7% of the total annual redd count (2003–2010) for Cedar River Chinook Salmon; upstream redds as a percentage of total redds increased over time, indicating that a new, naturally reproducing population above the dam was growing. The proportion of hatchery-origin fish spawning above the dam decreased over the duration of the study but was consistently higher than the hatchery component observed below the dam. | Chinook Salmon, Recolonization, Redd Abundance | ||
2014 | Joseph H. Anderson, Paul L. Faulds, Karl D. Burton, Michele E. Koehler, William I. Atlas, Thomas P. Quinn | Dispersal and productivity of Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon colonizing newly accessible habitat | Technical Report | Aquatic Habitat / Invertebrates / Insects, Habitat Restoration, Salmon | United States | Following construction of a fish ladder at Landsburg Diversion Dam on the Cedar River, Washington, USA, in fall 2003, we used DNA-based parentage to identify second generation Chinook (Oncorhynchus tshawytscha) and coho (Oncorhynchus kisutch) salmon as recruits that were produced above the dam or “strays” dispersing into the new habitat that were produced elsewhere. For both species, strays colonized immediately but decreased as a proportion of the total run over time. Chinook salmon strays were more numerous in years when the species was more abundant below the dam and included a much larger proportion of hatchery origin salmon than did coho salmon. Productivity, calculated as the ratio of female recruits sampled at the dam to female spawners, exceeded replacement in all four coho salmon cohorts but only two of five Chinook salmon cohorts, leading to more rapid population expansion of coho salmon. However, estimates of fishing mortality and recruitment into the Cedar River below the dam substantially increased Chinook salmon productivity estimates. Our results demonstrate that Pacific salmon are capable of rapidly recolonizing habitat made accessible by restoration and emphasize the importance of demographic exchange with preexisting populations during the transition from recolonization to self-sustainability. | Coho Salmon, Chinook Salmon, Recolonizing Habitat | ||
2014 | Joseph H. Anderson, George R. Pess, Richard W. Carmichael, Michael J. Ford, Thomas D. Cooney, Casey M. Baldwin, Michelle M. McClure | Planning Pacific Salmon and Steelhead Reintroductions Aimed at Long-Term Viability and Recovery | Technical Report | Salmon, Steelhead/Rainbow Trout | United States | Local extirpations of Pacific salmon Oncorhynchus spp. and steelhead O. mykiss, often due to dams and other stream barriers, are common throughout the western United States. Reestablishing salmonid populations in areas they historically occupied has substantial potential to assist conservation efforts, but best practices for reintroduction are not well established. In this paper, we present a framework for planning reintroductions designed to promote the recovery of salmonids listed under the Endangered Species Act. Before implementing a plan, managers should first describe the benefits, risks, and constraints of a proposed reintroduction.We define benefits as specific biological improvements towards recovery objectives. Risks are the potential negative outcomes of reintroductions that could worsen conservation status rather than improve it. Constraints are biological factors that will determine whether the reintroduction successfully establishes a self-sustaining population.We provide guidance for selecting a recolonization strategy (natural colonization, transplanting, or hatchery releases), a source population, and a method for providing passage that will maximize the probability of conservation benefit while minimizing risks. Monitoring is necessary to determine whether the reintroduction successfully achieved the benefits and to evaluate the impacts on nontarget species or populations. Many of the benefits, especially diversity and the evolution of locally adapted population | Long-Term Viability, Reintroductions, Salmon, Steelhead | ||
2013 | Reclamation | Environmental Assessment. 2013 Lower Klamath River Late-Summer Flow Augmentation from Lewiston Dam | Website | In-Stream Flow / Flow Regime | Lower Klamath | 18010209 | In August and September 2002, an estimated 170,000 fall-run Chinook salmon returned to the Klamath River, and a substantial number of adult Chinook salmon and other salmonids died prematurely in the lower Klamath River. This included an estimated 344 coho salmon listed as threatened under the Endangered Species Act (ESA). Federal, tribal, and state biologists studying the die-off concluded that: (1) pathogens Ichthyophthirius multifiliis (Ich) and Flavobacterium columnare (Columnaris) were the primary causes of death to fish; and (2) warm water temperatures, low water velocities and volumes, high fish density, and long fish residence times likely contributed to the disease outbreaks and subsequent mortalities (Guillen 2003; Belchik et al. 2004; Turek et al. 2004). Flows in the lower Klamath averaged about 2,000 cubic feet per second (cfs) during September 2002. In 2003, 2004, and 2012, predictions of large runs of fall-run Chinook salmon to the Klamath River Basin and drier than normal hydrologic conditions prompted Reclamation to arrange for late-summer flow augmentation to increase water volumes and velocities in the lower Klamath River to reduce the probability of a disease outbreak in those years. Thirty-eight thousand acre-feet (TAF) of supplemental water was released from Trinity Reservoir in 2003, and 36 TAF in 2004, and 39 TAF in 2012. While documentation of the effectiveness of these events is limited, general observations were that implementation of the sustained higher releases from August to early September in each year coincided with no significant disease or adult mortalities. | Environmental Assessment, Flow Augmentation, Lewiston Dam | |
2015 | Reclamation | Environmental Assessment. 2015 Lower Klamath River Late-Summer Flow Augmentation From Lewiston Dam | Website | In-Stream Flow / Flow Regime | Lower Klamath | 18010209 | This Environmental Assessment (EA) examines the potential direct, indirect, and cumulative impacts to the affected environment associated with the Bureau of Reclamation proposal to release supplemental flows from Lewiston Dam to improve water quality and reduce the prevalence of fish disease in the lower Klamath River. The Proposed Action will be implemented in late summer of 2015 to support the health of salmonid fish, including species that return to the Trinity River Basin to reproduce. The area of potential effect includes Trinity Reservoir and the Trinity River from Lewiston Dam to the confluence with the Klamath River, and the Klamath River to the Klamath River estuary near Klamath, California. Additionally, the affected environment includes the Sacramento River Basin as transbasin diversions from Trinity Reservoir via Lewiston Reservoir and the Clear Creek Tunnel to the Sacramento River Basin have occurred historically and are planned to occur throughout the summer (see Figure 1). This EA was prepared in accordance with the National Environmental Policy Act (NEPA), Council of Environmental Quality (CEQ) regulation (40 CFR Parts 1500-1508), and Department of the Interior Regulations (43 CFR Part 46). | Environmental Assessment, Flow Augmentation, Lewiston Dam | |
2005 | Reclamation | Natural Flow of the Upper Klamath River | Technical Report, Website | In-Stream Flow / Flow Regime | Upper Klamath | 18010203 | This report presents details of the investigation and results in estimating the natural flow of the upper Klamath River at Keno, Oregon. The area investigated includes the Klamath River Basin above Keno, Oregon, primarily in Klamath County, with some areas of Siskiyou and Modoc Counties in California. The study area includes the Sprague, Williamson, and Wood River basins, as well as Upper Klamath and Lower Klamath Lakes. The current purpose of this study is to provide an estimate of the monthly natural flows in the upper Klamath River at Keno. This estimate of the natural flow represents typical flow without agricultural development in the Upper Klamath River Basin, including its tributaries. This study used a water budget approach to assess the agricultural depletions and alterations to the natural flow. The approach was to evaluate the changes of agriculture from predevelopment conditions, estimate the effects of these changes, and restore the water budget to natural conditions by reversing the effects of agricultural development. Records used in this empirical assessment were derived from both stream gaging flow histories and from climatological records for stations within and adjacent to the study area. | Natural flow, | |
2012 | U.S. Department of the Interior, California Department of Fish & Game | Klamath Facilities Removal Final Environmental Impact Statement/Environmental Impact Report | Technical Report | Dam Removal, Habitat Restoration, Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | This Klamath Facilities Removal Environmental Impact Statement/Environmental Impact Report (EIS/EIR) evaluates the potential impacts of the removal of the four PacifiCorp1 dams on the Klamath River as contemplated in the Klamath Hydroelectric Settlement Agreement (KHSA). The Klamath Basin Restoration Agreement (KBRA), as well as the transfer of Keno Dam, will be treated and analyzed as a connected action. Together, these two agreements attempt to resolve long-standing conflicts in the Klamath River Basin, located in southern Oregon and northern California. The KHSA and KBRA provide for the restoration of native fisheries and sustainable water supplies throughout the Klamath River Basin. Specifically, the KHSA established a process for a Secretarial Determination. This process includes studies, environmental review, and a decision by the Secretary of the Interior regarding whether removal of J.C. Boyle, Copco 1, Copco 2, and Iron Gate Dams (1) will advance restoration of salmonid (salmon, steelhead, and trout) fisheries of the Klamath Basin, and (2) is in the public interest, which includes but is not limited to, consideration of potential impacts on affected local communities and Tribes. This EIS/EIR has been prepared according to requirements of the National Environmental Policy Act (NEPA) and the California Environmental Quality Act (CEQA). Direct, indirect, and cumulative impacts resulting from the project alternatives on the physical, natural, and socioeconomic environment of the region are addressed. | Environmental Impact Statement/Environmental Impact Report, Dam Removal, Salmon, Steelhead | |
2005 | North Coast Regional Water Quality Control Board, Donald A. Coates | Staff Report for the Action Plan for the Scott River Watershed. Sediment and Temperature Total Maximum Daily Loads | Technical Report | Sediment & Geomorphology, Water Temperature | Lower Klamath | 18010209 | This document is the Staff Report that supports and explains the Action Plan for the Scott River Watershed Sediment and Temperature Total Maximum Daily Loads (Scott River TMDL Action Plan). The Scott River TMDL Action Plan is proposed as an amendment to the Basin Plan. The Scott River watershed comprises approximately 520,184 acres (813 mi2) in Siskiyou County, California. The Scott River is tributary to the Klamath River. | Water Temperature, Sediment, Total Maximum Daily Loads | |
2013 | CRS, Harold F. Upton | Commercial Fishery Disaster Assistance | Technical Report | Other threatened fishes, Salmon | United States | Disaster relief may be provided by the federal government to assist the fishing industry when it is affected by a commercial fishery failure. A commercial fishery failure can be declared when fishermen endure economic hardships resulting from fish population declines or other disruptions to the fishery. The Department of Commerce can provide disaster assistance under Sections 308(b) and 308(d) of the Interjurisdictional Fisheries Act (16 U.S.C. §4107), as amended, and Sections 312(a) and 315 of the Magnuson-Stevens Fishery Conservation and Management Act (16 U.S.C §§1861a and 1864). The National Marine Fisheries Service plays a central role in determining whether a commercial fishery failure has occurred and in allocating federal funding to states and affected fishing communities. Congress plays a pivotal role by appropriating funds and providing oversight of the process. States also play a role by initiating requests, providing information, and planning for the use of funds. Oceanic conditions, climate, and weather events can impact fishery resources and/or commercial infrastructure such as boats, shoreside processing, and ports. Since 1994, federal commercial fishery failure determinations have been made on 42 occasions, and nearly $840 million in federal funding has been appropriated specifically for fishery disaster relief. Funds have been allocated to fisheries of the North Pacific, Pacific Northwest, Gulf of Mexico, and the East Coast. The most recent fishery failures have been declared for the Northeast multispecies fishery, Mississippi Sound fisheries, and certain Alaska Chinook salmon fisheries. | Commercial Fishery Disaster Assistance, Long-Term Management | ||
2016 | Klamath Tribal Water Quality Consortium | Upper Klamath Basin Nonpoint Source Pollution Assessment and Management Program Plan | Technical Report | Dam Operations, Habitat Restoration, Land Management & Irrigation, Water Quality, Water Temperature | Upper Klamath | 18010203 | The Consortium produced this Nonpoint Source (NPS) Assessment and Management Program Plan (AMPP) to address water quality issues in the Upper Klamath Basin which affect the Lower Klamath Basin (Figure 1). Water quality problems in the Upper Klamath Basin and its tributaries have been well documented in the Oregon Department of Environmental Quality Total Maximum Daily Loads (TMDLs) for Upper Klamath Lake (ODEQ 2002) and Upper Klamath and Lost rivers (ODEQ 2010b), California North Coast Regional Water Quality Control Board Klamath River TMDL (NCRWQCB 2010), evaluations of techniques for water quality improvement (Stillwater Sciences et al. 2012, 2013), an Environmental Impact Statement/Report for the proposed removal of the Klamath Hydroelectric Project (US DOI and CDFG 2012), and numerous other studies by federal, tribal, and state agencies. At Iron Gate Dam near the California border, the Klamath River water is often of insufficient quantity and poor quality to meet the needs of fish, wildlife, and humans. To address this problem, the Consortium’s goal is to improve land and water management in the Upper Klamath Basin area to improve the quality of water entering the Lower Klamath Basin. This NPS AMPP covers the portion of the Klamath Basin that is upstream of Iron Gate Dam near Hornbrook, CA, excepting the Lost River and Butte sub-basins. This area was chosen for this assessment because water quality impacts to water quality on the Klamath River primarily occur upstream of this location. | Water Quality, Agriculture, Pollution, Agreements, NPS Management Program Plan | |
2012 | Reclamation | Final Biological Assessment and Essential Fish Habitat Determination on the Proposed Removal of Four Dams on the Klamath River | Technical Report | Aquatic Habitat / Invertebrates / Insects, Dam Removal, Habitat Restoration, Other threatened fishes, Salmon, Suckers | Klamath Basin | 180102 | This Biological Assessment (BA) and Essential Fish Habitat (EFH) Determination for the Proposed Removal of Four Dams on the Kamath River has been revised from the October 3, 2011 version due to new information being made available, clarification of the proposed federal action, and recommended edits from the United States Fish and Wildlife Service (USFWS) and National Oceanic and Atmospheric Administration’s National Marine Fisheries Service (NMFS). More specifically, the main revisions made to this BA include: 1) clarification that the Klamath Basin Restoration Agreement (KBRA) is not a part of the Proposed Action and therefore, is not analyzed as such in this BA; 2) include section on Standard Operating Procedures (SOPs) and Best Management Practices (BMPs); 3) include information from the May 24, 2012 Technical Memorandum for the Evaluation of Dam Removal and Restoration (EDRRA) model runs on Klamath Chinook abundance forecast and subsequent revisions to Steller sea lion and Southern Resident Distinct Population Segment (DPS) killer whale analysis; 4) revision of determination of effects analysis on marbled murrelet; 5) revisions to Southern DPS eulachon, bull trout, and shortnose and Lost River suckers effects analysis; and 6) add language for proposed revision of northern spotted owl critical habitat. | Biological Assessment, Critical Habitat, Dam Removal, Essential Fish Habitat | |
2014 | E. Bayley Toft-Dupuy | The Ovidian Water Drop: Negotiations in the Klamath Basin | Academic Article | Land Management & Irrigation, Water Allocation & Rights | Klamath Basin | 180102 | The Klamath Basin agreements represent an imperfect, yet workable, framework for water management in the Upper and Lower Klamath Basin. After decades of conflict, the collaborative nature of the agreements provides a vision of stability for stakeholders and a potentially useful model for future water resource conflicts. With dozens of parties involved—including local, state, and federal actors—the agreements represent not only an integrative vision but also a profoundly symbolic redirection for a conflict-ridden basin. Like the water drop hollowing the stone, the ultimate solution in the basin did not spring from force or conflict but emerged, over time, from the perseverance and continual resolve of the parties involved: parties jaded by the status quo and determined to find some version of a sustainable solution. | Negotiations, Land Use, Agreements, Stakeholders | |
2016 | PacifiCorp | Lower Klamath Project – Exhibit M | Technical Report | Dam Operations | Lower Klamath | 18010209 | The Lower Klamath Project area is located on the upper Klamath River in Klamath County (south-central Oregon) and Siskiyou County (north-central California). The nearest principal cities are Klamath Falls, Oregon, located at the northern end of the Project area; Medford, Oregon, 45 miles northwest of the downstream end of the Project; and Yreka, California, 20 miles southwest of the downstream end. Figure M2.1-1 is a map of the Project area. The Lower Klamath Project consists of four developments which are on the Klamath River between river mile (RM) 190 and RM 228. The Lower Klamath Project begins at the J.C. Boyle Development and continues downstream to the Iron Gate Development. | iron gate hatchery, Transmission network, PacifiCorp, Powerhouse, Reservoir | |
2016 | Department of the Interior | Department Of The Interior letter | Technical Memo | Dam Operations, Dam Removal | 180102 | Department of the Interior support of the the application submitted by PacifiCorp and the Klamath River Renewal Corporation and urges the Federal Energy Regulator Commission to approve these applications as a critical step toward resolving the significant water-related issues in the Klamath Basin. | Klamath River Renewal Corporation, PacifiCorp, Dam removal, Secretarial Statement of Support | ||
2003 | SRFB, Washington Salmon Recovery Funding Board | Monitoring and Evaluation Strategy For Habitat Restoration And Acquisition Projects | Technical Report | Adaptive Management, Habitat Restoration, Monitoring Programs | United States | The Salmon Recovery Funding Board (SRFB) was established in 1999 to fund salmon habitat restoration and protection projects and related activities. Starting in 2000, the SRFB established policies authorizing the types of projects eligible for funding and an evaluation process for selecting projects. The SRFB, in their Policies and Guidelines, identified implementation, effectiveness, and validation monitoring as key components of their adaptive management model. This document is intended to address elements of Washington’s Comprehensive Monitoring Strategy (CMS), and it provides: | Habitat restoration, Monitoring, Evaluation Strategy, Design Criteria | ||
2015 | IPCC | Climate Change 2014 Synthesis Report | Technical Report | Climate Change Effects | The Synthesis Report (SYR) distils and integrates the findings of the three Working Group contributions to the Fifth Assessment Report (AR5) of the Intergovernmental Panel on Climate Change (IPCC), the | Climate Change, Risk and Impacts, Adaptation and Mitigation | |||
1999 | Kier Associates | Mid-term Evaluation Of The Klamath River Basin Fisheries Restoration Program | Technical Report | Habitat Restoration, Salmon, Steelhead/Rainbow Trout, Water Quality, Water Temperature | Klamath Basin | 180102 | This Mid-term Evaluation Of The Klamath River Basin Fisheries Restoration Program is the first in-depth evaluation of the Program since its launch in 1987. It may be the most comprehensive evaluation of any large-scale Pacific salmon restoration program undertaken to date. The two-state Klamath River basin covers ten million acres. Of that area the Klamath Fisheries Restoration Program addresses nearly 3,000,000 watershed This evaluation covers not only the biological, but the institutional and political aspects of the Program. The evaluation employs a number of methods, including the use of the Program’s administrative databases, interviews of Program participants, field evaluation of the Program’s restoration projects, and the use of information concerning other, comparable Pacific Coast fisheries restoration programs. The evaluation results are presented in the same order as they appear in the evaluation workplan, with each of the following chapters covering one of the workplan’s nine basic tasks. A tenth chapter, an evaluation of both large and small hatchery operations in the Klamath basin, was developed at the request of the Klamath River Fish and Wildlife Office (KRFWO). | Restoration Program, Fish Management, Upper Basin Amendment, Salmon, Green sturgeon, Habitat Protection, | |
2009 | Stillwater Sciences | Effects of sediment release following dam removal on the aquatic biota of the Klamath River. Final Technical Report | Technical Report | Dam Removal, Sediment & Geomorphology | Klamath Basin | 180102 | Four dams on the Klamath River are under consideration for removal: Iron Gate, Copco 1 and 2, and J.C. Boyle. These dams are located between river miles 196 and 225 in Oregon (J.C. Boyle) and California (Iron Gate, Copco 1 and 2), downstream of the Upper Klamath Lake. Dam removal options currently under consideration would result in 1.3–2.9 million metric tons of fine sediment (sand, silt, and finer) being transported into downstream reaches of the Klamath River (Stillwater Sciences 2008), resulting in high suspended sediment loads, which can result in deleterious effects on aquatic habitats and species. This report first summarizes Stillwater Sciences’s analyses of the physical properties and concentrations of suspended sediment likely to result from sediment releases. It then focuses on the potential biological effects of sediment release on aquatic habitats and species if the dams were to be removed. In addition, opportunities to reduce the impacts of dam removal were explored, and recommendations are presented based on our analysis. The long-term benefits of dam removal (although assumed crucial to recovery of the aquatic biota) were not analyzed as a part of this study. | Dam removal, Aquatic biota, Sediment | |
2010 | Stillwater Sciences | Anticipated Sediment Release from Klamath River Dam Removal within the Context of Basin Sediment Delivery. Final Report | Technical Report | Dam Removal, Sediment & Geomorphology | Klamath Basin | 180102 | Four dams on the Klamath River owned by PacifiCorp (Iron Gate, Copco 1 and 2, and J.C. Boyle) are being considered for removal to improve fish passage and water quality. Numerical modeling under various scenarios predicted that dam removal could release up to 3.2 million tons of reservoir sediment to downstream reaches, the majority of which would be released in the first year following removal (GEC 2006, Stillwater Sciences 2008). Little sedimentation or increase in flood stage heights are expected to occur downstream of Iron Gate Dam (Stillwater Sciences 2008). Additional studies assessed the potential effects of dam removal on fish and water quality in the lower Klamath River (Stillwater Sciences 2009a, Stillwater Sciences 2009b). This study was commissioned by the California State Coastal Conservancy to place them anticipated sediment release from dam removal into the context of background sediment delivery from watershed sources. Specific objectives of the study included (1) summarizing existing information about the quantity and size distribution of background sediment delivery from the watershed to the Klamath River, (2) comparing estimates of the cumulative background sediment delivery with independent estimates of total sediment flux, and (3) comparing modeled estimates of sediment release from dam removal with estimates of background sediment delivery. The Klamath River traverses 254 mi and drains a 15,722 mi2 area that includes the Modoc Plateau, Cascade Range, Klamath Mountains, and Northern Coast Range. The Klamath River watershed can be divided into upper and lower basins with distinctly different climatic, geologic, geomorphic, and hydrologic characteristics. The geologic boundary between the upper and lower basins occurs a short distance downstream of Iron Gate Dam near Cottonwood Creek. | Sediment Release, Dam Removal, Iron Gate Dam, Geologic and Geomorphic Controls | |
2011 | Yantao Cui, Ethan Bell, Maia Singer, Frank Ligon | Qualitative assessment of prolonged facility removal for the Klamath River dams | Technical Memo | Dam Removal | Klamath Basin | 180102 | The U.S. Department of the Interior (DOI), as the National Environmental Policy Act (NEPA) lead agency, and the California Department of Fish and Game (DFG), as the California Environmental Quality Act (CEQA) lead agency, are currently developing an Environmental Impact Statement/ Environmental Impact Report (EIS/EIR) for the Klamath Hydroelectric Settlement Agreement (KHSA) and the Klamath Basin Restoration Agreement (KBRA). The EIS/EIR will evaluate the environmental and social effects of a set of alternatives that may include removing all or portions of J.C. Boyle, Copco 1 and 2, and Iron Gate dams on the Klamath River, which would provide volitional fish passage to aid in restoring salmonid fisheries. The current plan for removing the four dams calls for reservoir drawdown during the winter of 2019 in a controlled manner, releasing the majority of the erodible sediments to the middle and lower Klamath River prior to the summer of 2020. This approach would limit the major fisheries impacts to the winter of 2019 and spring of 2020. Based upon a recent fisheries impacts analysis that considered predicted suspended sediment concentration and duration as well as geographic distribution and life-history traits of focal fish species in the downstream river reaches, suspended sediment impacts would be sub-lethal for most species and life stages, while some species and life stages would experience lethal impacts (Stillwater Sciences 2011). Some stakeholders involved in the EIS/EIR and Secretarial Determination process have questioned the current dam removal plan and have asked if impacts to aquatic species could be reduced by prolonging the release of erodible sediments over multiple years. A prolonged release period can potentially decrease suspended sediment concentrations at any given point in time but would extend the number of years of relatively high concentrations in the river downstream of the dams. | Qualitative assessment, Staged dam removal, Slow reservoir drawdown, sequenced dam removal, biological considerations | |
2010 | Stillwater Sciences | Potential Responses of Coho Salmon and Steelhead Downstream of Iron Gate Dam to No-Action and Dam- Removal Alternatives for the Klamath Basin | Technical Report | Dam Operations, Dam Removal, Dams & Reservoirs, Salmon, Steelhead/Rainbow Trout, Trinity River, Water Quality | Klamath Basin | 180102 | The intent of this report is to summarize the anticipated effects of fulfilling the terms of both the Klamath Hydropower Settlement Agreement as well as the Klamath Basin Restoration Agreement (i.e., dam removal paired with KBRA actions) on two species of anadromous salmonids: coho salmon (Oncorhynchus kisutch) and steelhead (O. mykiss), as compared with a “no action” alternative. This report will be made available to selected panels of fisheries experts to aid in the Secretarial Determination process. The analysis only addresses potential fish population responses within the Klamath mainstem and tributaries downstream of Iron Gate Dam. | Coho Salmon, Winter Steelhead, Summer Steelhead, Iron Gate Dam, Tributaries, Biological and genetic diversity, Dams-Out Alternative, | |
2008 | Stillwater Sciences | Klamath River Dam Removal Study: Sediment Transport DREAM-1 Simulation | Technical Report | Dam Removal, Sediment & Geomorphology | Klamath Basin | 180102 | Iron Gate, Copco 1, Copco 2, and J.C. Boyle dams, located on the Klamath River in Oregon and California downstream of Upper Klamath Lake, are under consideration for possible removal. Data collected to date indicate that 11.5 to 15.3 million m3 (15 to 20 million cubic yards) of deposits are stored within the four reservoirs (Eilers and Gubala 2003; GEC 2006). Unlike the other mid- to large-sized dam removal projects in the U.S. (e.g., Marmot Dam on the Sandy River, Oregon; dams on the Elwha River, Washington; Matilija Dam on Ventura Creek, California; and San Clemente Dam on Carmel River, California), the deposits in the above four reservoirs on the Klamath River have a high water content (~ 80% by volume), and the majority of the sediment particles are fine-grained (i.e., in the silt and clay range), while the composition of the Klamath River channel bed downstream of these dams are cobble sized (e.g., Stillwater Sciences 2004; Cui et al. 2005; GEC 2006; Shannon and Wilson Inc. 2006). As a result, if the deposits are released downstream, high suspended sediment concentrations and their associated biological impacts due to the quick release of fine sediment will most likely be the major concern (GEC 2006), while concerns for downstream sediment deposition common to other dam removal projects will be minor, as demonstrated by the “worst-case-scenario” assumption analyses conducted in Stillwater Sciences (2004). | Dam removal, Sediment Transport, DREAM-1 Simulation | |
1997 | Thomas A. Shaw, Chris Jackson, Dan Nehler, Michael Marshall | Klamath River (Iron Gate Dam to Seiad Creek) Life Stage Periodicities for Chinook, Coho and Steelhead | Technical Report | Dam Operations, Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | This report is a compilation of historic and recent published and unpublished literature, field notes, and personal communications pertaining to life stage periodicities for races of chinook salmon (Onchorhynchus tshawyscha), coho salmon (O. kisutch) and steelhead trout (O. mykiss) in the Klamath River, northern California. Periodicity information is necessary to evaluate the effects of magnitude, duration and timing of discharge from Iron Gate Dam on microhabitat for anadromous salmonids of interest in the Klamath River. In 1984, periodicities for anadromous salmonids were described for the entire Klamath River Basin based on a round table discussion among personnel of the U.S. Fish and Wildlife Service, U.S. Forest Service, California Department of Fish and Game and several private consulting firms (USFWS 1984a). Since 1984, additional information has been collected by numerous agencies which will aid in refining the periodicities described in that report. | Migration, Spawning, Emergence, Chinook, Coho, Steelhead | |
2008 | Dr. Thomas B. Hardy | Support for the Klamath Settlement Agreement | Technical Memo | Dam Operations, Hydrology, Lower Klamath, Upper Klamath | Klamath Basin | 180102 | Support for the Klamath Settlement Agreement, this document in conjunction with several full days of technical discussions by the principal authors in Arcata allowed a detail and comprehensive review prior to the discussions held in Mt. Shasta on April 10th and 11th 2008. | Settlement Agreement | |
2015 | Damon H. Goodman, Stewart B. Reid | Regional Implementation Plan for Measures to Conserve Pacific Lamprey (Entosphenus tridentatus), California – North Coast Regional Management Unit | Technical Report | Contaminants, Lower Klamath, Other threatened fishes, Upper Klamath, Water Quality | United States | Pacific Lamprey, Entosphenus tridentatus, were historically widely distributed from Mexico north along the Pacific Rim to Japan. They are culturally important to indigenous people throughout their range, and play a vital role in the ecosystem: cycling marine nutrients, passing primary production up the food chain as filter feeding larvae, promoting bioturbation in sediments, and serving as food for many mammals, fishes and birds. Recent observations of substantial declines in the abundance and range of Pacific Lamprey have spurred conservation interest in the species, with increasing attention from tribes, agencies, and others. In 2003 the U.S. Fish and Wildlife Service (USFWS) was petitioned by 11 conservation groups to list four species of lamprey in Oregon, Washington, Idaho, and California, including the Pacific Lamprey, under the Endangered Species Act (ESA) (Nawa et al. 2003). The USFWS review of the petition indicated a likely decline in abundance and distribution in some portions of the Pacific Lamprey's range and the existence of both long-term and proximate threats to this species, but the petition did not provide information describing how the portion of the species’ petitioned range (California, Oregon, Idaho, and Washington) or any smaller portion is appropriate for listing under the ESA. The USFWS was therefore unable to define a listable entity based on the petition and determined Pacific Lamprey to be ineligible for listing (USFWS 2004). | Pacific Lamprey (Entosphenus tridentatus), Fish passage, Stream Flow Management, | ||
2017 | The Nature Conservancy | Conservation Gateway – Klamath Basin | Website | Aquatic Habitat / Invertebrates / Insects, Estuary of the Klamath, Habitat Restoration, Other threatened fishes, Riparian Species & Wildlife, Salmon, Suckers, Water Quality | Klamath Basin | 180102 | The Upper Klamath Basin of southern Oregon contains a vast complex of lakes, rivers and wetlands support tremendous freshwater biodiversity including seventeen native fish species. In addition, the basin is among one of the highest in concentration of groundwater-dependent ecosystems in Oregon. For example, groundwater contributes 86% of the water budget of Klamath Marsh National Wildlife Refuge, and 15% of the inflow to Upper Klamath Lake. However, flow alteration, habitat loss and water quality degradation have severely impacted aquatic resources. Today, six of the seventeen native fish in the Upper Klamath Basin are extinct, extirpated, or listed as endangered or threatened. A number of plans and agreements have focused attention on restoration of floodplain and wetland habitat, recognizing the importance of the basin. | Habitat Loss, Water Quality, Endangered Suckers, Restoration | |
2012 | NewFields River Basin Services, Dr. G. M. Kondolf | Evaluating Stream Restoration Projects in the Sprague River Basin | Technical Report | Adaptive Management, Habitat Restoration, Redband Trout, Suckers, Water Quality | Middle Sprague, Sprague - Sycan | 18010202 | Aquatic ecosystems in the Sprague River Basin in southern Oregon have been degraded by historical and current land uses including logging, dam construction, cattle grazing, and agriculture. Since the mid-1990’s, projects have been funded to improve watershed conditions in the Sprague River Basin for affected fish species, including Lost River sucker, shortnose sucker, and redband trout, channel stability, riparian habitat, and water quality. Continuation and potential future expansion of stream restoration projects in the Sprague River Basin warrant a basinwide review of the benefits of previous restoration projects. The purpose of this project was to evaluate the performance of a variety of completed restoration projects in the basin and identify key lessons learned. These lessons will be used to help implement meaningful adaptive management of the basin’s aquatic resources and to guide future project prioritization, planning, and design. | Restoration, Evaluation, Geology, Hydrology, Geomorphology, Organizational Framework, Conceptual Models, Adaptive Management, Guidance for Future Projects | |
2004 | Marmorek, David, Ian Parnell, Marc Porter, Christine Pinkham, Clint Alexander, Calvin Peters, Joel Hubble, Charles Paulsen, Timothy Fisher | A Multiple Watershed Approach to Assessing the Effects of Habitat Restoration Actions on Anadromous and Resident Fish Populations | Technical Report | Habitat Restoration, Land Management & Irrigation, Other threatened fishes, Salmon | United States | Habitat protection and restoration is a cornerstone of current strategies to restore ecosystems, recover endangered fish species, and rebuild fish stocks within the Columbia River Basin. Strategies featuring habitat restoration include the 2000 Biological Opinion on operation of the Federal Columbia River Power System (FCRPS BiOp) developed by the National Marine Fisheries Service (NMFS), the 2000 Biological Opinion on Bull Trout developed by the US Fish and Wildlife Service (USFWS), and Sub- Basin Plans developed under the Fish and Wildlife Program of the Northwest Power and Conservation Council (NWPCC). There is however little quantitative information about the effectiveness of different habitat restoration techniques. Such information is crucial for helping scientists and program managers allocate limited funds towards the greatest benefits for fish populations. Therefore, it is critical to systematically test the hypotheses underlying habitat restoration actions for both anadromous and resident fish populations. This pilot project was developed through a proposal to the Innovative Projects fund of the NWPCC (ESSA 2002). It was funded by the Bonneville Power Administration (BPA) following reviews by the Independent Scientific Review Panel (ISRP 2002), the Columbia Basin Fish and Wildlife Authority (CBFWA 2002), the NWPCC and BPA. The study was designed to respond directly to the above described needs for information on the effectiveness of habitat restoration actions, including legal measures specified in the 2000 FCRPS BiOp (RPA 183, pg. 9-133, NMFS 2000). Due to the urgency of addressing these measures, the timeline of the project was accelerated from a duration of 18 months to 14 months. The purpose of this pilot project was to explore methods for evaluating past habitat restoration actions and their effects on fish populations. | Bull trout, Spring Chinook, Habitat Restoration, alternative multi-watershed designs, Implementation monitoring, Monitoring protocols, Yakima River subbasin, Salmon River, Columbia Basin, | ||
2016 | Nicolaas Bouwes, Stephen Bennett, Joe Wheaton | Adapting Adaptive Management for Testing the Effectiveness of Stream Restoration: An Intensively Monitored Watershed Example | Technical Report | Adaptive Management, Habitat Restoration | United States | A large effort is underway to test the effectiveness of stream restoration in the Pacific Northwest using intensively monitored watersheds (IMWs) to improve salmonid habitat with the expectation to increase salmonid production (Bennett et al. 2016). How, or whether, stream restoration can improve target salmonid populations and ecosystem functions remains equivocal despite the enormous efforts that have been expended | Adaptive Management, Planning, Evaluation, | ||
2016 | Stephen Bennett, George Pess, Nicolaas Bouwes, Phil Roni, Robert E. Bilby, Sean Gallagher, Jim Ruzycki, Thomas Buehrens, Kirk Krueger, William Ehinger, Joseph Anderson, Chris Jordan, Brett Bowersox, Correigh Greene | Progress and Challenges of Testing the Effectiveness of Stream Restoration in the Pacific Northwest Using Intensively Monitored Watersheds | Technical Report | Adaptive Management, Habitat Restoration, Monitoring Programs | United States | Across the Pacific Northwest, at least 17 intensively monitored watershed projects have been implemented to test the effectiveness of a broad range of stream restoration actions for increasing the freshwater production of salmon and steelhead and to better understand fish–habitat relationships. We assess the scope and status of these projects and report on challenges implementing them. We suggest that all intensively monitored watersheds should contain key elements based on sound experimental design concepts and be implemented within an adaptive management framework to maximize learning. The most significant challenges reported by groups were (1) improving coordination between funders, restoration groups, and researchers so that restoration and monitoring actions occur based on the project design and (2) maintaining consistent funding to conduct annual monitoring and evaluation of data. However, we conclude that despite these challenges, the intensively monitored watershed approach is the most reliable means of assessing the efficacy of watershed scale restoration. | restoration, monitoring, intensively monitored watershed (IMW), data management, knowledge transfer, Adaptive management framework | ||
2015 | Oregon Department of Fish and Wildlife (ODFW) | Threatened, Endangered, and Candidate Fish and Wildlife Species | Website | Other threatened fishes | United States | Threatened, Endangered, and Candidate Fish and Wildlife Species published by Oregon Department of Fish and Wildlife, Wildlife division: Regulating harvest, health, and enhancement of wildlife populations. | ODFW, Threatened, Endangered, Candidate Fish, Wildlife Species | ||
2017 | High Country News | Tribal fishing on the Klamath River | Website | Other threatened fishes, Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The Klamath River flows out of the high deserts of southern Oregon, bending southwest across the state line and then plunging through thickly forested canyons before emptying into the Pacific Ocean on the Northern California coast. Its headwaters are dammed and diverted, mainly for agriculture and electricity generation, but the lower river is home to the third-largest salmon runs in the Continental U.S., as well as populations of steelhead, lamprey, sturgeon and other species. Tribes in the lower basin—the Yurok, Hoopa and Karuk—have long relied upon this fishery and have fought to protect it in the face of habitat loss and ecological degradation. California’s ongoing drought has brought additional stress to an already strained situation, but the river remains an essential source of food and income for many of those who live along it. | Tribal fishing, sturgeon, steelhead, salmon, lamprey, fishing | |
2016 | J. Ryan Bellmore, Jeffrey J. Duda, Laura S. Craig, Samantha L. Greene, Christian E. Torgersen, Mathias J. Collins, Katherine Vittum | Status and trends of dam removal research in the United States | Technical Report | Dam Removal, Sediment & Geomorphology, Water Quality | United States | Aging infrastructure coupled with growing interest in river restoration has driven a dramatic increase in the practice of dam removal. With this increase, there has been a proliferation of studies that assess the physical and ecological responses of rivers to these removals. As more dams are considered for removal, scientific information from these dam-removal studies will increasingly be called upon to inform decisions about whether, and how best, to bring down dams. This raises a critical question: what is the current state of dam-removal science in the United States? To explore the status, trends, and characteristics of dam-removal research in the U.S., we searched the scientific literature and extracted basic information from studies on dam removal. Our literature review illustrates that although over 1200 dams have been removed in the U.S., fewer than 10% have been scientifically evaluated, and most of these studies were short in duration (<4 years) and had limited (1–2 years) or no pre-removal monitoring. The majority of studies focused on hydrologic and geomorphic responses to removal rather than biological and water-quality responses, and few studies were published on linkages between physical and ecological components. Our review illustrates the need for long-term, multidisciplinary case studies, with robust study designs, in order to anticipate the effects of dam removal and inform future decision making. | Dam removal, Biological metrics, Water quality metrics, Physical metrics | ||
2015 | Jacob W. Malcom, Ya-Wei Li | Data contradict common perceptions about a controversial provision of the US Endangered Species Act | Technical Report | Miscellaneous | United States | Separating myth and reality is essential for evaluating the effectiveness of laws. Section 7 of the US Endangered Species Act (Act) directs federal agencies to help conserve threatened and endangered species, including by consulting with the US Fish and Wildlife Service (FWS) or National Marine Fisheries Service on actions the agencies authorize, fund, or carry out. Consultations ensure that actions do not violate the Act’s prohibitions on “jeopardizing” listed species or “destroying or adversely modifying” these species’ critical habitat. Because these prohibitions are broad,many people consider section 7 the primary tool for protecting species under the Act, whereas others believe section 7 severely impedes economic development. This decades-old controversy is driven primarily by the lack of data on implementation: past analyses are either over 25 y old or taxonomically restricted. We analyze data on all 88,290 consultations recorded by FWS from January 2008 through April 2015. In contrast to conventional wisdom about section 7 implementation, no project was stopped or extensively altered as a result of FWS finding jeopardy or adverse modification during this period. We also show that median consultation duration is far lower than the maximum allowed by the Act, and several factors drive variation in consultation duration. The results discredit many of the claims about the onerous nature of section 7 but also raise questions as to how federal agencies could apply this tool more effectively to conserve species. We build on the results to identify ways to improve the effectiveness of consultations for imperiled species conservation and increase the efficiency of consultations. | US Endangered Species Act | ||
2016 | National Marine Fisheries Service | Endangered Species Act Recovery Plan for the Southern Distinct Population Segment of Eulachon (Thaleichthys pacificus) | Technical Report | Adaptive Management, Climate Change Effects, Dam Operations, Monitoring Programs, Other threatened fishes, Water Quality | United States | This Recovery Plan serves as a blueprint for the protection and recovery of the southern Distinct Population Segment (DPS) of eulachon (Thaleichthys pacificus) using the best available science per the requirements of the Endangered Species Act (ESA). The Recovery Plan links management actions to an active research program to fill data gaps and a monitoring program to assess these actions’ effectiveness. Research and monitoring results will provide information to refine ongoing actions and prioritize new actions to achieve the Plan’s goal: to restore the listed species to the point where it no longer requires the protections of the ESA. The goal of this Recovery Plan is to increase the abundance and productivity of eulachon, and to protect and enhance the genetic, life history, and spatial diversity of eulachon throughout its geographical range while sufficiently abating threats to warrant delisting of the species. The objectives are: | Endangered Species Act (ESA), eulachon, Thaleichthys pacificus, adaptive management | ||
2017 | Conservation Biology Institute | Data Basin | Website | Miscellaneous | United States | Data Basin is a science-based mapping and analysis platform that supports learning, research, and sustainable environmental stewardship. As environmental conservation problems become more serious and the demand to solve them grows more urgent, it is critical that science, practice, policy, and people are integrated in stronger ways. A team of scientists, software engineers, and educators at the Conservation Biology Institute (CBI) built Data Basin with the strong conviction that we can expand our individual and collective ability to develop sustainable solutions by empowering more people through access to spatial data, non-technical tools, and collaborative networks. - Explore and organize data & information Data Basin is used by over 17000 scientists, natural resource practitioners, students & educators, and interested citizens from diverse sectors and geographies. | research, sustainable environmental stewardship, spatial data, collaborative networks | ||
2003 | Oregon Historical Society | The Oregon History Project – Sucker Harvest | Website | Suckers | United States | For thousands of years, the Lost River suckers and shortnose suckers have been important to the Klamath Indian culture and essential to their subsistence. In 1983, the Klamath Indian Tribes, Oregon Department of Fish and Wildlife, and U.S. Fish and Wildlife Service jointly initiated a biological study of Klamath Basin suckers. The data concluded that the sucker population was decreasing due to poor water quality and levels in Upper Klamath Lake. This prompted the Klamath Tribes to restrict their sucker fishing in 1985, and by the next year, tribal leaders agreed to terminate all sucker fishing. Rather than hold their traditional sucker harvest celebrations, as pictured here in 1905, the Klamath Tribes today hold “Return of the C’wam” (Klamath language for the Lost River sucker, pronounced “cha-wam”) ceremonies. The decision to curtail irrigation water to Klamath Reclamation Project users in 2001 was based on a federally mandated Biological Opinion that determined that Project water was needed to protect endangered coho salmon and Lost River and shortnose suckers. The events of 2001, however, polarized Klamath Basin communities and created conflicts between farmers and conservationists, farmers and government agencies, and farmers and tribal members. During the spring and summer of 2001, faculty from Oregon State University and the University of California Cooperative Extension studied the economic, social, institutional, and natural consequences of the Klamath Basin crisis. They interviewed, among other groups, Klamath Basin Native Americans, all of whom recounted recent incidents where tribal members were shunned or treated badly by non-Natives. Some were threatened with guns and run off the road in retaliation for the water restrictions. In one case, a tribesman was beaten by non-Natives. Tribal officials advised members to walk away from arguments or other tense situations. | Suckers | ||
2015 | J.E. O’Connor, J. J. Duda , G. E. Grant | 1000 dams down and counting | Technical Report | Dam Removal | United States | Forty years ago, the demolition of large dams was mostly fiction, notably plotted in Edward Abbey’s novel The Monkey Wrench Gang. Its 1975 publication roughly coincided with the end of large-dam construction in the United States. Since then, dams have been taken down in increasing numbers as they have filled with sediment, become unsafe or inefficient, or otherwise outlived their usefulness. Last year’s removals of the 64-m-high Glines Canyon Dam and the 32-m-high Elwha Dam in northwestern Washington State were among the largest yet, releasing over 10 million cubic meters of stored sediment. Published studies conducted in conjunction with about 100 U.S. dam removals and at least 26 removals outside the United States are now providing detailed insights into how rivers respond). A major finding is that rivers are resilient, with many responding quickly to dam removal. Most river channels stabilize within months or years, not decades (4), particularly when dams are removed rapidly; phased or incremental removals typically have longer response times. The rapid physical response is driven by the strong upstream/downstream coupling intrinsic to river systems. Reservoir erosion commonly begins at knickpoints, or short steep reaches of channel, that migrate upstream while cutting through reservoir sediment. Substantial fractions of stored reservoir sediment—50% or more—can be eroded within weeks or months of breaching. Sediment eroded from reservoirs rapidly moves downstream. Some sediment is deposited downstream, but is often redistributed within months. Many rivers soon trend toward their pre-dam states. | Dam removal | ||
2013 | United States Fish and Wildlife Service (USFWS) - Yreka Fish and Wildlife Office | Status of Native Anadromous Fish Species of the Klamath River Basin | Website | Salmon | Klamath Basin | 180102 | Chinook salmon are currently the most economically important commercial fishery resource in the Klamath River, and are caught in ocean fisheries from Monterey Bay to the Columbia River. In the Klamath Basin, Chinook currently follow two life history patterns. “Spring Chinook” return from the ocean in the spring, and spend the summer making their way to higher portions of the watershed, where they spawn in August-September. Before the construction of dams on the Klamath River, spring Chinook were the dominant salmon race in the Upper Klamath Basin, but they have been reduced to one dwindling wild run in the Salmon River subbasin and a hatchery run in the Trinity River. “Fall Chinook” return from the ocean in September and spawn October-November in the main stem rivers and large tributaries. Most Chinook juveniles migrate to the ocean in the late spring of their first year, avoiding the hazards of summer rearing. | Chinook Salmon, fall chinook run, spawning success, spring chinook run | |
2017 | Oregon Institute of Technology | Klamath Waters Digital Library | Website | Land Management & Irrigation, Riparian Species & Wildlife, Water Allocation & Rights | Klamath Basin | 180102 | Welcome to the Klamath Waters Digital Library, an online repository of information resources related to water issues in the Klamath Watershed. The digital library encompasses a collection of full-text documents, reports, articles, photographs and maps from the 1800s to the present as well as many special collections. Topics covered include water allocation, land and endangered species management, and the history and development of Klamath Reclamation Project. | Digital Library, Water Allocation, Endangered species management | |
2017 | NOAA | Pacific Northwest Salmon Habitat Project Database | Tabular Data, Website | Habitat Restoration, Salmon | United States | Pacific Northwest Salmon Habitat Project Database. This is a public site for exploring, querying, and downloading fiscal, location, work type, and metric information for salmon habitat restoration projects in the Pacific Northwest is currently in development. The database currently contains spatially referenced, project-level data on over 26,000 restoration actions initiated at over 42,000 locations in the last 15 years (98% of projects report start or end dates in the last 15 years) in the states of Washington, Oregon, Idaho and Montana, USA. Across the Pacific Northwest, both public and private agents are working to improve riverine habitat for a variety of reasons, including improving conditions for threatened and endangered salmon. These projects are moving forward with little or no knowledge of specific linkages between restoration actions and the responses of target species. Targeted effectiveness monitoring of these actions is required to redress this lack of mechanistic understanding, but such monitoring is in turn dependent on detailed restoration information such as implementation monitoring. We created a standardized data dictionary of project types now being applied throughout the region (now RPA 73 in the FCRPS Biop) to assemble a standardized database of restoration projects. The database was designed specifically to address the needs of regional monitoring programs that evaluate the effectiveness of restoration actions. This database is maintained by the Northwest Fisheries Science Center's Mathematical Biology and Systems Monitoring Program within the Conservation Biology Division. | Salmon, Restoration, Database, Habitat Restoration | ||
2017 | CalFish | CalFish Data Portal | Website | Aquatic Habitat / Invertebrates / Insects, Salmon | United States | The CalFish Mission is to create, maintain, and enhance high quality, consistent data that are directly applicable to policy, planning, management, research, and recovery of anadromous fish and related aquatic resources in California; and to provide data and information services in a timely manner in formats that meet the needs of users. CalFish is a cooperative program involving a growing number of agency and organization partners. Such cooperative support has and will continue to guide the future development of CalFish and ensure the longevity and continued usefulness of the CalFish site. There are many programs in California that are actively gathering, compiling and analyzing fish and aquatic habitat data. Bringing all of this information together and making it available to a variety of users is crucial to the success of fisheries and habitat monitoring, evaluation, and management within the state. Centralizing access to California fisheries data makes it much easier to develop and maintain state-wide data standards and promote further development of related data programs in California. CalFish addresses the needs of a variety of natural resource management agencies by serving as both data publisher and data clearinghouse, providing access to original data and links to sites with related fish and aquatic habitat information. CalFish provides direct access to many different types of data relating to fish and aquatic habitat data. These data include categories such as: Population monitoring, Distributions, Migration barriers, Hatcheries, Species recovery, Habitat monitoring, Habitat restoration, Genetics. Users are able to view these data via two basic methods: querying the database tables directly or querying the data geographically. | policy, planning, management, research, recovery, anadromous fish | ||
2017 | Five Counties Salmonid Conservation Program | Five Counties Salmonid Conservation Program | Website | Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The goal of the Five Counties Salmonid Conservation Program (5C) is to seek opportunities to contribute to the long-term recovery of salmon and steelhead in Northern California. 5C is a project of the Northwest California Resource Conservation & Development Council. 5C and/or member counties coordinate numerous fish passage improvement, sediment reduction, habitat enhancement, and water quality improvement projects in the Program's area in collaboration with 5C partners. Listed below are projects (completed, in progress, and future). They are labeled Fish Passage Improvement Projects (FPIP) and/or Sediment Reduction (SedRed). Listings with no comments are in development and pending. Click on links in projects lists for more details in the 5 areas. | Conservation, Salmon, Steelhead | |
2004 | United States Department of Agriculture - Natural Resources Conservation Service | Work Plan for Adaptive Management Klamath River Basin Oregon & California | Website | Adaptive Management, Aquatic Habitat / Invertebrates / Insects, Water Quality | Klamath Basin | 180102 | In the spring of 2001 drought and impacts of the Endangered Species Act prompted the U.S. Bureau of Reclamation to discontinue supplying project irrigation water to over 1,300 farms and ranches in the Klamath Basin. The Natural Resources Conservation Service (NRCS) immediately provided technical and financial assistance to these producers to minimize drought impacts. In cooperation with the Conservation Districts and landowners, NRCS was able to establish 41,000 acres of cover crops on highly erodible lands using Emergency Watershed Protection Program funds. The Klamath Basin conservation districts in Oregon and California then requested NRCS assistance in developing a strategy to mitigate the impacts of drought on agriculture in the Klamath Basin. Later that year, the first of a series of strategic planning sessions was held. From these meetings, the local conservation districts developed a list of mutual resource goals and objectives for the Klamath. To mitigate the effects of the drought on agriculture, conservation districts throughout the 10-million acre Klamath Basin have focused on four resource concerns: (1) decreasing the amount of water needed for agriculture, (2) increasing water storage, (3) improving water quality, and (4) developing fish and wildlife habitat. To achieve these objectives, the conservation districts need timely, quality resource information with which to make decisions, set priorities, and determine the best conservation activities. The future conservation activities and accomplishments, however, will be subject to the availability of funding. | Adaptive Management, conservation, long-term demand, basin wide planning | |
2016 | Pacific Fishery Management Council | Pacific Coast Salmon Fishery Management Plan | Technical Report | Aquatic Habitat / Invertebrates / Insects, Salmon | United States | This document is the Pacific Coast Salmon Fishery Management Plan, a fishery management plan (FMP) of the Pacific Fishery Management Council (Council or PFMC) as revised and updated for implementation in 2013 and beyond. It guides management of commercial and recreational salmon fisheries off the coasts of Washington, Oregon, and California. Since 1977, salmon fisheries in the exclusive economic zone (EEZ) (three to 200 miles offshore) off Washington, Oregon, and California have been managed under salmon FMPs of the Council. Creation of the Council and the subsequent development and implementation of these plans were initially authorized under the Fishery Conservation and Management Act of 1976. This act, now known as the Magnuson- Stevens Fishery Conservation and Management Act (Magnuson-Stevens Act; MSA), was amended by the Sustainable Fisheries Act (SFA) in 1996, and most recently amended by the Magnuson-Stevens Fishery Conservation and Management Reauthorization Act (MSRA) in 2007. The plan presented in this document contains or references all the elements required for an FMP under the MSA. It completely replaces the 1999 version of the Pacific Coast Salmon Plan. | FMP, PFMC, NOAA, Conservation, Fish Habitat, Bycatch, | ||
2007 | National Marine Fisheries Service, NOAA, Conservation | Magnuson-Stevens Reauthorization Act Klamath River Coho Salmon Recovery Plan | Technical Report | Habitat Restoration, Salmon | Klamath Basin | 180102 | Built on the foundation of the extensive work already accomplished, NMFS has relied heavily on the existing recovery strategies developed by CDFG (2004) for coho salmon using substantial local stakeholder participation to develop this MSRA Recovery Plan. Our overview of coho salmon life history information available for the Klamath River Basin in Section III found that typical of large river systems, adult coho salmon have a broad period of freshwater entry in the Klamath River and juvenile coho salmon have a strong tendency to redistribute within the Klamath River Basin due to seasonal changes in conditions. Although information on coho salmon population trends in the Klamath River Basin remains incomplete, the available data suggest that coho salmon stock abundance remains at low levels and depressed, with one coho salmon brood year class considerably stronger than the other two brood year classes. This MSRA Recovery Plan should serve as a valuable tool for NMFS development of its SONCC coho salmon recovery plan under the ESA. For instance, the MSRA Recovery Plan summarizes ongoing threats affecting Klamath River coho salmon and current conservation efforts throughout the Klamath River Basin, as well as provides up-to-date scientific information on coho salmon status and trends. | Coho Salmon, Conservation, NMFS, Restoration activities | |
2014 | NOAA | Klamath River Basin 2014 Report to Congress | Technical Report | Dam Operations, Habitat Restoration, Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The Magnuson-Stevens Fishery Conservation and Management Reauthorization Act of 2006 required NOAA’s National Marine Fisheries Service (NMFS) to develop a recovery plan for Klamath River coho salmon in 2007 and submit annual reports to Congress beginning in 2009. This document is the fifth annual Klamath River Basin Report to Congress. The report updates information presented in the 2012 annual report with information for the calendar years 2012 and 2013 and includes: (1) the actions taken under the recovery plan and other laws relating to recovery of Klamath River coho salmon (Oncorhynchus kisutch), and how those actions are specifically contributing to its recovery; (2) the progress made on the restoration of salmon spawning habitat, including water conditions as they relate to salmon health and recovery, with emphasis on the Klamath River and its tributaries below Iron Gate Dam; (3) the status of other Klamath River anadromous fish populations, particularly Chinook salmon; and (4) the actions taken by the Secretary of Commerce (Secretary) to address the calendar year 2003 National Research Council (NRC) recommendations regarding monitoring and research on Klamath River Basin salmon stocks. | Coho Salmon, Steelhead, Chinook Salmon, NMFS, SONCC, USFWS | |
2017 | Official U.S. Department of the Interior | Secretarial Determination Studies | Technical Report, Website | Adaptive Management, Aquatic Habitat / Invertebrates / Insects, Contaminants, Dam Operations, Dam Removal, Dams & Reservoirs, Estuary of the Klamath, Habitat Restoration, Hatcheries, Hydrology, In-Stream Flow / Flow Regime, Invasive Species, Land Management & Irrigation, Lower Klamath, Mainstem Klamath River, Monitoring Programs, Other threatened fishes, Redband Trout, Riparian Species & Wildlife, Salmon, Sediment & Geomorphology, Steelhead/Rainbow Trout, Suckers, Water Allocation & Rights, Water Quality, Water Temperature | Klamath Basin | 180102 | This is the official website of the Department of the Interior, and other federal and state agencies that are involved in carrying out obligations set forth in the Klamath Hydroelectric Settlement Agreement (KHSA), including the Secretarial Determination on Klamath River dams. Technical Studies and Data for Secretarial Determination Process provides the following reports: - Secretarial Determination Studies - Final Secretarial Determination Overview Report (October 2012) - Final Klamath Dam Removal Overview Report for the Secretary of the Interior: an Assessment of Science and Technical Information. The following studies/reports have been conducted as part of the Secretarial Determination Process: - Engineering, Geomorphology/Construction Studies & Information | KHSA, KBRA, NEPA, CEQA, Restoration, Agreements, Secretarial Determination Studies, Tribal Reports, Water Quality, Economic Studies, Sediments, Geomorphology, Real Estate, Cultural Values, Greenhouse Gas Emissions, Myxozoan Disease, FEMA | |
2003 | OWEB | OWEB Prioritization Framework Improvement Priorities at Basin and Watershed Scales: Draft OWEB Prioritization Process V 4.2 | Technical Report | Habitat Restoration, Salmon, Steelhead/Rainbow Trout | OWEB contracted to develop a framework that establishes improvement priorities at regional geographic scales and evaluates the relative merits of proposed improvement projects at local watershed scales. OWEB is required by statute to establish regional priorities that will guide funding decisions by the Board (ORS 5431.371 (1) (c)). In addition, OWEB’s Board clarified its funding goal in a “grant funding preference criterion” in September 2001. The Board agreed that, “Capital expenditure project funding priorities will primarily focus on addressing those factors in the watershed that directly limit the improvement of water quantity and water quality and the recovery of fish species listed under the state or federal Endangered Species Act.” The contracted work developed a Prioritization Framework that reflects this preference. The framework is founded on principles of conservation biology and applicable to all basins. It has been tested in two pilot basins. The protection of functioning habitats is an important goal, and should work in concert with improvement actions; however, this project concentrates on identifying watershed improvement project priorities and not habitat protection actions. A separate and concurrent OWEB project designed to identify habitat protection priorities has been initiated. This prioritization project complements the identification of habitat protection actions developed through the Land Acquisition Pilot by providing a framework for identifying regional watershed improvement priorities. This project was designed to create the following two products: Part I. Project Prioritization Framework and Part II. Basin and Watershed Scale Improvement Priorities | Project Prioritization Framework, Basin and Watershed Scale Improvement Priorities, restoration, Watershed Enhancement, Rehabilitation, Winter Steelhead, Summer Steelhead, Spring Chinook, Fall Chinook, Chum | |||
2008 | D. H. Goodman, S. B. Reid, M. F. Dockers, G. R. Haas, A. P. Kinziger | Mitochondrial DNA evidence for high levels of gene flow among populations of a widely distributed anadromous lamprey Entosphenus tridentatus (Petromyzontidae) | Technical Report | Other threatened fishes | United States | Mitochondrial DNA variation among 1246 individuals of Pacific lamprey (Entosphenus tridentatus) from 81 populations spanning 2600 km from the Skeena River, British Columbia, to the Ventura River, California, was surveyed using five restriction enzymes. A total of 29 composite haplotypes was detected in two gene fragments (ND2 and ND5). The three most common haplotypes, occurring in 91% of all samples, were present at similar frequencies in all regions. Samples were divided into six biogeographic regions based on sample distribution and geographical landmarks to assess geographic genetic structure. Analysis of molecular variance indicated that 99% of the genetic variation was explained by variability within drainages. The lack of geographical population structure is likely related to a life-history pattern that includes a prolonged larval freshwater stage, migration to oceanic feeding and return to fresh water to spawn. The lack of strong natal homing apparently promotes gene flow among drainages and regions. | Entosphenus tridentatus, genetic variation, Lampetra tridentata, mitochondrial DNA, Pacific lamprey, phylogeography | ||
2016 | Nicholas A. Som, Nicholas J. Hetrick, J. Scott Foott, Kimberly True | Response to Request for Technical Assistance – Prevalence of C. shasta Infections in Juvenile and Adult Salmonids | Technical Memo | Salmon | Lower Klamath | 18010209 | The Arcata Fish and Wildlife Office (AFWO) Fisheries Program is working with its scientific co-investigators to develop a series of four technical memorandums that summarize recent findings of studies that contribute to our current understanding of Ceratanova shasta (syn Ceratomyxa shasta) infections in the Klamath River, in response to requests for technical assistance from the Yurok and Karuk tribes. Each of the topics addressed in the four technical memorandums: 1) geomorphic channel conditions and flow, 2) polychaete distribution and infections, 3) actinospore and myxospore concentrations, and 4) prevalence of C. shasta | Parvicapsula minibicornis, Ceratanova shasta | |
2016 | Aaron T. David, Stephen A. Gough, William D. Pinnix | Summary of Abundance and Biological Data Collected During Juvenile Salmonid Monitoring on the Mainstem Klamath River Below Iron Gate Dam, California, 2014 | Technical Report | Dam Operations, Monitoring Programs, Salmon | Lower Klamath | 18010209 | This report summarizes results from the 2014 season of juvenile salmonid outmigrant monitoring on the mainstem Klamath River below Iron Gate Dam. Trapping occurred at three locations: below the confluence with Bogus Creek (river km 308), where Interstate 5 crosses the Klamath River (river km 294), and near the Kinsmen Creek confluence upstream of the confluence with the Scott River (river km 238). Both frame nets and rotary screw traps were used to sample juvenile salmonids and other fishes. Traps were operated beginning in mid- to late February and continued through mid-May or early June. Juvenile salmonids were enumerated daily when traps were operating and subsamples of salmonids were measured for length and weight. Non-salmonid fishes were also enumerated. Mark-recapture studies were conducted periodically at each trap site throughout the season to estimate trap efficiency. The efficiency estimates were combined with the catch data to estimate weekly and seasonal outmigration abundance of natural-origin age-0 juvenile Chinook Salmon at each trap site using a Bayesian time-stratified spline population estimation method. For the periods that traps were operated, abundance estimates of natural-origin age-0 Chinook Salmon were approximately 2.5 million at the Bogus trap site, 2.9 million at the I-5 trap site, and 5.3 million at the Kinsman trap site. | Klamath River, Salmon, Chinook, Coho, Steelhead, Frame Net, Rotary Screw Trap, Juvenile, Outmigrant, Mark-Recapture, Trap Efficiency, Stream Salmonid Simulator | |
2015 | Mark D. Magneson | Klamath and Trinity River Intra-Gravel Water Temperatures, 2014 and 2015 | Technical Report | Mainstem Klamath River, Trinity River, Water Temperature | Trinity River, Klamath Basin | 180102 | Temperature recorders were used to monitor water temperatures in spawning gravels (intra-gravel) and in the water column above spawning gravels (surface) in the Klamath and Trinity Rivers from September 2014 to late June 2015. Water temperature recorders were installed in areas having high densities of Chinook Salmon redds to assess potential differences in predicted embryo incubation and subsequent emergence timing calculated using intra-gravel versus surface water temperatures. In general, intra-gravel water temperatures were warmer in the fall and early winter and cooler in the spring than surface water temperatures. Findings of this study are important given the influence of intra-gravel water temperatures within redds on the development of salmonid embryos and the resulting influence on timing of emergence. | Intra-Gravel, Klamath River, Trinity River, Chinook Salmon, Water Temperature | |
2016 | Julie D. Alexander, Jerri L. Bartholomew, Katrina A. Wright, Nicholas A. Som, and Nicholas J. Hetrick | Integrating models to predict distribution of the invertebrate host of myxosporean parasites | Technical Report | Salmon | United States | Manayunkia speciosa, a freshwater polychaete, is the invertebrate host of myxosporean parasites that negatively affect salmonid populations in the Pacific Northwest of the USA. Factors that drive the distribution of M. speciosa are not well understood, which constrains our understanding of disease dynamics and the development of management solutions. We described the distribution of M. speciosa at 3 sites on the Klamath River, California, based on 2-dimensional hydraulic models (2DHMs) and a generalized linear mixed model (GLMM). 2DHMs were built to explain hydraulic variation at each site and used to stratify biological sampling effort along depth–velocity gradients and by substrate class. We assessed the presence/absence of M. speciosa at 362 georeferenced locations in July 2012 and built GLMMs to describe relationships between hydraulic and substrate variables and the distribution of M. speciosa. The best-fitting GLMMs demonstrated that M. speciosa distributions were associated with depth–velocity conditions and substrate size during base discharge (area under the receiver operating characteristic curve [AUC] = 0.88) and at peak discharge (AUC = 0.86). We evaluated the GLMMs with an independent data set collected in July 2013 (n = 280) and found that the top models predicted the distribution of M. speciosa with a high degree of accuracy (AUC = 0.90). These results support the conclusion that the summer distribution of M. speciosa is related to observed hydraulic and substrate conditions during base discharge (summer) and modeled hydraulic and substrate conditions during peak discharge (late winter to early spring). These results may have implications for the use of flow manipulation as a disease management tool. These results also illustrate the importance of examining species distribution data in the context of temporally disconnected environmental factors and demonstrate how models can fulfill this need. | parasites, Manayunkia speciosa, salmonid disease, enteronecrosis, Ceratonova shasta, Parvicapsula minibicornis, two-dimensional hydraulic model, | ||
2015 | Mark D. Magneson | Klamath River Flow and Water Temperature, Water Year 2012 | Technical Report | In-Stream Flow / Flow Regime, Mainstem Klamath River, Monitoring Programs, Water Temperature | Klamath Basin | 180102 | Water temperature was monitored at several locations in the Klamath Basin from April to October 2012. The uppermost Klamath River site was located upstream of Copco 1 Reservoir on the mainstem Klamath River, and the lowermost site was established just upstream of the Klamath Estuary near Klamath, CA. The highest daily mean water temperature recorded on the mainstem Klamath during the period of study was 24.6°C at Happy Camp, CA on August 5 and 17. Of three tributaries sampled, the Shasta River recorded the highest daily mean water temperature at 26.0°C, but only had a slight influence on mainstem water temperatures due to its low relative volume. Mainstem water temperatures peaked about two weeks later than the past 10-yr mean (2002-2011). Augmented flow releases from Lewiston Dam on the Trinity River were used to reduce risk of a potential fish kill in the lower Klamath River and significantly reduced Klamath River water temperatures during implementation. | water temperature, river flow | |
2014 | R. Adam Ray, RussellW. Perry, Nicholas A. Som, Jerri L. Bartholomew | Using Cure Models for Analyzing the Influence of Pathogens on Salmon Survival | Academic Article | Salmon | United States | Parasites and pathogens influence the size and stability of wildlife populations, yet many population models ignore the population-level effects of pathogens. Standard survival analysis methods (e.g., accelerated failure time models) are used to assess how survival rates are influenced by disease. However, they assume that each individual is equally susceptible and will eventually experience the event of interest; this assumption is not typically satisfied with regard to pathogens of wildlife populations. In contrast, mixture cure models, which comprise logistic regression and survival analysis components, allow for different covariates to be entered into each part of the model and provide better predictions of survival when a fraction of the population is expected to survive a disease outbreak.We fitted mixture cure models to the host–pathogen dynamics of Chinook Salmon Oncorhynchus tshawytscha and Coho Salmon O. kisutch and the myxozoan parasite Ceratomyxa shasta. Total parasite concentration, water temperature, and discharge were used as covariates to predict the observed parasite-induced mortality in juvenile salmonids collected as part of a long-term monitoring program in the Klamath River, California. The mixture cure models predicted the observed total mortality well, but some of the variability in observed mortality rates was not captured by the models. Parasite concentration and water temperature were positively associated with total mortality and the mortality rate of both Chinook Salmon and Coho Salmon. Discharge was positively associated with total mortality for both species but only affected the mortality rate for Coho Salmon. The mixture cure models provide insights into how daily survival rates change over time in Chinook Salmon and Coho Salmon after they become infected with C. shasta. | Coho Salmon, Chinook Salmon, parasites, pathogens, mortality | ||
2014 | Nicholas A. Soma, Pascal Monestiez, Jay M. Ver Hoef, Dale L. Zimmerman, Erin E. Peterson | Spatial sampling on streams: principles for inference on aquatic networks | Technical Report | Aquatic Habitat / Invertebrates / Insects, Hydrology, In-Stream Flow / Flow Regime | United States | For ecological and environmental data, prior inquiries into spatial sampling designs have considered two-dimensional domains and have shown that design optimality depends on the characteristics of the target spatial domain and intended inference. The structure and water-driven continuity of streams prompted the development of spatial autocovariance models for stream networks. The unique properties of stream networks, and their spatial processes, warrant evaluation of sampling design characteristics in comparison with their two-dimensional counterparts. Common inference scenarios in stream networks include spatial prediction, estimation of fixed effects parameters, and estimation of autocovariance parameters, with prediction and fixed effects estimation most commonly coupled with autocovariance parameter estimation. We consider these inference scenarios under a suite of network characteristics and stream-network spatial processes. Our results demonstrate, for parameter estimation and prediction, the importance of collecting samples from specific network locations. Additionally, our results mirror aspects from the prior two-dimensional sampling design inquiries, namely, the importance of collecting some samples within clusters when autocovariance parameter estimation is required. These results can be applied to help refine sample site selection for future studies and further showcase that understanding the characteristics of the targeted spatial domain is essential for sampling design planning. | sampling design, spatial statistics, stream networks | ||
2012 | John Beeman, Steven Juhnke, Greg Stutzer, Katrina Wright | Effects of Iron Gate Dam Discharge and Other Factors on the Survival and Migration of Juvenile Coho Salmon in the Lower Klamath River, Northern California, 2006–09 | Technical Report | Dam Operations, Lower Klamath, Salmon, Water Temperature | Lower Klamath | 18010209 | Current management of the Klamath River includes prescribed minimum discharges intended partly to increase survival of juvenile coho salmon during their seaward migration in the spring. To determine if fish survival was related to river discharge, we estimated apparent survival and migration rates of yearling coho salmon in the Klamath River downstream of Iron Gate Dam. The primary goals were to determine if discharge at Iron Gate Dam affected coho salmon survival and if results from hatchery fish could be used as a surrogate for the limited supply of wild fish. Fish from hatchery and wild origins that had been surgically implanted with radio transmitters were released into the Klamath River at river kilometer 309 slightly downstream of Iron Gate Dam. Tagged fish were used to estimate apparent survival between, and passage rates at, a series of detection sites as far downstream as river kilometer 33. Conclusions were based primarily on data from hatchery fish, because wild fish were only available in 2 of the 4 years of study. Based on an information-theoretic approach, apparent survival of hatchery and wild fish was similar, despite differences in passage rates and timing, and was lowest in the 54 kilometer (km) reach between release and the Scott River. Models representing the hypothesis that a short-term tagging- or handling-related mortality occurred following release were moderately supported by data from wild fish and weakly supported by data from hatchery fish. Estimates of apparent survival of hatchery fish through the 276 km study area ranged from 0.412 (standard error [SE] 0.048) to 0.648 (SE 0.070), depending on the year, and represented an average of 0.790 per 100 km traveled. Estimates of apparent survival of wild fish through the study area were 0.645 (SE 0.058) in 2006 and 0.630 (SE 0.059) in 2009 and were nearly identical to the results from hatchery fish released on the same dates. | Coho Salmon, survival rates | |
2012 | John W. Beeman, Brian Hayes, Katrina Wright | Detection Probability of an In-Stream Passive Integrated Transponder (PIT) Tag Detection System for Juvenile Salmonids in the Klamath River, Northern California, 2011 | Technical Report | Salmon | Klamath Basin | 180102 | A series of in-stream passive integrated transponder (PIT) detection antennas installed across the Klamath River in August 2010 were tested using tagged fish in the summer of 2011. Six pass-by antennas were constructed and anchored to the bottom of the Klamath River at a site between the Shasta and Scott Rivers. Two of the six antennas malfunctioned during the spring of 2011 and two pass-through antennas were installed near the opposite shoreline prior to system testing. The detection probability of the PIT tag detection system was evaluated using yearling coho salmon implanted with a PIT tag and a radio transmitter and then released into the Klamath River slightly downstream of Iron Gate Dam. Cormack-Jolly-Seber capture-recapture methods were used to estimate the detection probability of the PIT tag detection system based on detections of PIT tags there and detections of radio transmitters at radio-telemetry detection systems downstream. One of the 43 PIT- and radio-tagged fish released was detected by the PIT tag detection system and 23 were detected by the radio-telemetry detection systems. The estimated detection probability of the PIT tag detection system was 0.043 (standard error 0.042). Eight PIT-tagged fish from other studies also were detected. Detections at the PIT tag detection system were at the two pass-through antennas and the pass-by antenna adjacent to them. Above average river discharge likely was a factor in the low detection probability of the PIT tag detection system. High discharges dislodged two power cables leaving 12 meters of the river width unsampled for PIT detections and resulted in water depths greater than the read distance of the antennas, which allowed fish to pass over much of the system with little chance of being detected. Improvements in detection probability may be expected under river discharge conditions where water depth over the antennas is within maximum read distance of the antennas. | PIT tagging, Radio-Telemetry | |
2012 | Charles D. Chamberlain, Shane Quinn, Billy Matilton | Distribution and Abundance of Chinook Salmon Redds in the Mainstem Trinity River 2002 to 2011 | Technical Report | Salmon, Trinity River | Trinity River, Lower Klamath | 18010209 | Salmon redds were mapped and carcasses collected in the mainstem Trinity River each fall 2002 through 2011 to quantify and spatially characterize Chinook salmon spawning in the mainstem Trinity River. We applied generalized additive models to the spatiotemporal distribution of hatchery marked or unmarked spawned female salmon carcasses to apportion redd numbers for natural origin and hatchery origin Chinook salmon. These data serve as baseline for the Trinity River Restoration Program to evaluate response of spawning distributions to river rehabilitation and other management actions. Eighteen river rehabilitation sites between Lewiston Dam and the North Fork Trinity River have been implemented over the course of this study. Though spawning distribution responded to physical alterations on a local feature scale (salmon constructed redds in newly created side channels for example), the proportion of redds constructed within the up and downstream boundaries of these rehabilitation sites had not yet significantly changed at broader reach scales. High density spawning area locations remained consistent year to year with little exception. We observed an increase in the mean distance from Lewiston Dam for construction of natural origin Chinook salmon redds over the course of this study. The distribution of hatchery origin Chinook salmon redds remained highly skewed toward Lewiston Dam and Trinity River Hatchery. The number of redds estimated to be constructed by natural origin Chinook salmon females ranged from as low as 2,249 in 2005 to as high as 5,312 in 2011. Estimates of those constructed by hatchery origin Chinook salmon females ranged from as low as 350 in 2009 to as high as 2,269 in 2003. There was no relationship observed in distance downstream of Lewiston Dam that Chinook salmon constructed redds and the yearly total number of Chinook salmon redds. | Salmon redds, Chinook salmon, Trinity River Restoration Program | |
2013 | Stephen A. Gough, Samuel C. Williamson | Fall Chinook Salmon Run Characteristics and Escapement for the Main-Stem Klamath River, 2001-2010 | Technical Report | Mainstem Klamath River, Salmon | Klamath Basin | 180102 | Adult fall-run Chinook salmon (Oncorhynchus tshawytscha) carcasses were surveyed on the mid-Klamath River during spawning seasons 2001 through 2010 to estimate annual escapement using postmortem tag-recovery statistical methods and to characterize the age and sex compositions and spawning success of the runs. The study area consisted of eight consecutive reaches extending 21.2 river km from Iron Gate Dam downriver to the Shasta River confluence. A focus of this study was to improve what we believed to be negatively-biased estimates of escapement generated using redd counts. Unstratified Petersen carcass tag-recovery methods yielded 3.3 to 4.8 successfully spawned females per observed redd based on redd count data collected concurrently with carcass surveys. Based on Kimura-adjusted scale readings and unstratified Petersen escapement estimates, jacks (age-2 fish) represented less than 10% of the total annual escapement estimates for six of the ten survey years, with the greatest observed proportion of jacks occurring in 2006 (16%) and 2008 (17%). Low jack abundance in 2005 was indicative of low returns of age-3 adults in 2006 and age-4 adults in 2007 and similarly, low jack abundance in 2007 was indicative of low returns of age-3 | Adult fall-run Chinook Salmon, escapement, Carcass Data, Tag Recovery | |
2012 | Thomas B. Hardy, Russell Perry, Sam Williamson, Thomas Shaw | Application of a salmonid life cycle model for evaluation of alternative flow regimes. | Conference Proceeding | In-Stream Flow / Flow Regime, Salmon, Water Temperature | United States | The SALMOD Chinook (Oncorhynchus tshawytscha) life cycle model for the Klamath River, California, USA was updated to address a number of computational and life history limitations based on over 10 years of accumulated experience. SALMOD II incorporates a complete spatial delineation of each mesohabitat unit between Iron Gate Dam and the Klamath estuary (~320 km). Mesohabitat specific relationships for Chinook spawning, fry, presmolt and immature smolt life stages are based on site specific hydrodynamic modeling from 8 representative study sites that incorporate target mesohabitat characteristics of channel width and base flow magnitude. SALMOD II was calibrated and validated to multi-year collection data and incorporated improved density dependant movement and mortality factors, a disease factor, an improved water temperature simulation model and other key life history requirements. We explain the underlying computational framework for the modeling system, highlight the spatial delineation and extrapolation methodology for mesohabitat specific habitat versus flow relationships for each Chinook life stage, and highlight important factors such as emigration and density dependant habitat movement factors. | Chinook Salmon, Modeling | ||
2009 | Scott Foott, Greg Stutzer, R. Fogerty, Hal Hansel, Steven Juhnke, John Beeman | Pilot study to access the role of Ceratomyxa shasta infection in mortality of fall-run Chinook smolts migrating through the lower Klamath River in 2008. | Technical Report | Lower Klamath, Salmon | Lower Klamath | 18010209 | Apparent survival and migration rate of radio-tagged hatchery subyearling Chinook salmon released at Iron Gate Hatchery was monitored in the Klamath River to see if the timing of mortality coincided with observations of ceratomyxosis in re-captured coded wire tag cohorts. Despite rapid emigration, these relatively large (mean fork length 92 mm) smolts had a cumulative apparent survival to the estuary of 0.074 (SE 0.024) and standardized rates of survival per 100 km tended to decrease linearly with distance from the hatchery. The last fish detection occurred 26 days after release but median travel time between Iron Gate Hatchery (rkm 309) and the last receiver near the Klamath estuary (Blake’s Riffle rkm 13) was about 10 days. The majority of apparent mortality (8-10 d post-release) occurred before disease from Ceratomyxa shasta | Ceratomyxa shasta, mortality, Chinook smolts | |
2008 | John W. Beeman, Steve Juhnke, Greg Stutzer, Nicholas Hetrick, | Survival and Migration Behavior of Juvenile Coho Salmon in the Klamath River Relative to Discharge at Iron Gate Dam, Northern California, 2007 | Technical Report | Dam Operations, Monitoring Programs, Salmon, Water Temperature | Lower Klamath | 18010209 | This report describes a study of survival and migration behavior of radio-tagged juvenile coho salmon (Oncorhynchus kisutch) in the Klamath River, northern California, in 2007. This was the third year of a multi-year study with the goal of determining the effects of discharge at Iron Gate Dam (IGD) on survival of juvenile coho salmon downstream. Survival and factors affecting survival were estimated in 2006 and 2007 after work in 2005 showed radio telemetry could be used effectively. The study has included collaborative efforts among U.S. Geological Survey (USGS), U.S. Fish and Wildlife Service (USFWS), the Karuk and Yurok Tribal Fisheries Departments, and the U.S. Bureau of Reclamation. The objectives of the study included: (1) estimating the survival of wild and hatchery juvenile coho salmon in the Klamath River downstream of Iron Gate Dam, determining the effects of discharge and other covariates on juvenile coho salmon survival (2) and migration (3), and (4) determining if fish from Iron Gate Hatchery (IGH) could be used as surrogates for the limited source of wild fish. | iron gate hatchery, coho salmon, tagging, disease | |
2014 | Mark Magneson, Philip Colombano | Mainstem Klamath River Fall Chinook Salmon Redd Survey 2013 | Technical Report | Mainstem Klamath River, Salmon | Klamath Basin | 180102 | This report summarizes the 2013 fall Chinook salmon Oncorhynchus tshawytscha redd survey on the mainstem Klamath River and is the 21st such summary provided by the Arcata Fish and Wildlife Office. The survey was conducted over a 7-week period (October 22 to December 5, 2013), covering 114.7 river kilometers (rkm) between the Shasta River (rkm 288.5) and Indian Creek (rkm 173.8) confluences. We observed 2,611 fall Chinook salmon redds in 2013, which is the second highest count for this section of river since annual surveys began in 1993. Redd numbers over the previous 20-year history of this survey ranged from 243 (in 1993) to 3,390 (in 2012). The 2013 count is about 2.6 times larger than the prior 20-year mean (?? ? = 1,007). Redd densities within approximately 10-rkm sections were highest between China Creek (rkm 191.9) and Ottley Gulch (rkm 183.7; 60.4 redds/rkm) and lowest between Shasta River and Humbug Creek (rkm 279.7; 4.7 redds/rkm). | Chinook salmon, Klamath River, redd, escapement, spawning survey | |
2015 | Mark D. Magneson, Charles D. Chamberlain | The Influence of Lewiston Dam Releases on Water Temperatures of the Trinity River and Lower Klamath River, CA, April to October, 2014. | Technical Report | Dam Operations, Hydrology, Water Temperature | Lower Klamath, Trinity River | 18010209 | Water year 2014 was designated as “Critically Dry” in the Trinity River Basin, with 434,683 acre-feet of water released from Lewiston Dam to the Trinity River. This total water volume exceeded the Record of Decision prescribed volume of 369,000 acre-feet for a Critically DryWater Year due to additional releases made in the fall to reduce the risk of a fish kill occurring in the lower Klamath River. Water temperatures were monitored at several locations along the Trinity and lower Klamath rivers from April to mid-October 2014 to evaluate the influence of Lewistown Dam releases on downstream water temperatures. We compare observed values to water temperature objectives specified in the Trinity River Flow Evaluation Study and adopted by the Trinity River Record of Decision, including the spring-summer water temperature targets established for outmigrating salmonids and the objectives for the 64-kilometer reach located downstream of Lewiston Dam to protect holding and spawning adult salmonids. Additionally, we document the influence of Lewiston Dam releases on water temperatures in the lower Klamath River downstream of the confluence of the Trinity River and summarize data from 2002 to 2014 during the augmented fall flow period. This document is the thirteenth consecutive annual water temperature report generated for the Trinity River Restoration Program. | dam releases, Lewiston Dam | |
2006 | Mark Magneson, Stephen Gough | Mainstem Klamath River Coho Salmon Redd Surveys 2001 to 2005 | Technical Report | Mainstem Klamath River, Salmon | Klamath Basin | 180102 | Results of annual coho salmon Oncorhynchus kisutch redd surveys conducted on the mainstem Klamath River in November and December, 2001 through 2005 are summarized. The survey reach covers 136.5 river kilometers (rkm) located between Iron Gate Dam (IGD; rkm 310.3) near Hornbrook and the Indian Creek confluence at Happy Camp, California (rkm 173.8). A combined total of 38 coho salmon redds were observed within the survey reach for all five years combined. In 2001, eight additional redds were observed in the mainstem Klamath River downstream of the lower boundary of the study reach at Indian Creek. Within the survey reach, the highest annual redd count occurred in 2001 (n = 13). Seven redds were observed in 2003 and 6 redds were documented annually in 2002, 2004, and 2005. Coho salmon redds were observed in the mainstem Klamath River between November 15 and December 18, with the majority of new redds (63%) counted in mid December. About 68% of observed redds were located within 20 rkm of IGD and all redds were constructed within 1.5 rkm of a tributary mouth. Mean redd area (3.6 m2), mean pit depth (0.61 m), mean mound depth (0.38 m), mean adjacent depth (0.55 m), and focal velocity range (0.49-1.05 m/s) were greater than values reported in the literature for other systems, but sample sizes were too low for statistical comparison. | Redd Surveys, Coho Salmon | |
2006 | Charles D. Chamberlain, Samuel C. Williamson | Klamath River Salmonid Emigrant Trapping Catch, Mortality, and External Health Indicators – 2004 | Technical Report | Salmon | Klamath Basin | 180102 | Several field investigations conducted in spring and early summer of 2004 resulted in concurrent operation of young-of-year and age 1+ salmonid emigrant traps at six mainstem and three Klamath River tributary sites. Mortality sharply increased starting April 29 at the Bogus, I-5, and Kinsman frame trap sites. By early May, mortality approached 50% for wild young-of-year Chinook salmon captured at Kinsman, Happy Camp, and Persido Bar. From June 2 to June 18, mortality observed in daily catches of Chinook salmon at Kinsman ranged between 51% and 88%. Overall mortality of young-of-year Chinook salmon observed at lower mainstem trap sites (Persido Bar and Big Bar, 6% each) were paltry compared with those observed at Kinsman and Happy Camp (34% and 25%, respectively). In mid-May, a systematic external examination was incorporated into fish sampling as more than half of the live fish captured at Kinsman and Happy Camp exhibited external signs of disease and/or stress. High and low incidence of pale gills and other external abnormalities coincided with sites and time periods having high and low mortality. Based on external examinations, Kinsman was a “hotspot” of symptomatic young-of-year Chinook salmon (at 82%), declining downstream to Happy Camp (56%), Persido Bar (40%), and Big Bar (14%). Common external abnormalities noted in examinations of Chinook salmon included pale gills (pink or grey in color rather than a healthy red appearance), distended abdomen, gill rot, and lamprey wounds. Abnormality rates were highest at Kinsman and Happy Camp for all salmon species and age classes. Mortality was low at tributary traps operated at Horse Creek, Seiad Creek, and Elk Creek and captured fish were healthy in appearance. This agrees well with previous fish health investigations and two studies conducted on the Klamath River in 2004. | frame trap, mortality, fish health, abnormalities | |
2006 | Greg M. Stutzer, Jason Ogawa, Nicholas J. Hetrick, Tom Shaw | An Initial Assessment of Radio Telemetry for Estimating Juvenile Coho Salmon Survival, Migration Behavior, and Habitat Use in Response to Iron Gate Dam Discharge on the Klamath River, California. | Technical Report | Aquatic Habitat / Invertebrates / Insects, Dam Operations, Salmon | Lower Klamath | 18010209 | High capture probabilities observed at automated radio telemetry arrays in 2005 indicate that radio telemetry should be a valid method for estimating survival of juvenile coho salmon in the Klamath River downstream from IGD. This technique has been used successfully to estimate survival of juvenile salmonids in the Columbia and Snake rivers for the last several years (Counihan et al. 2002, Skalski et al. 2002). One distinct advantage of radio telemetry over mark-recapture methods based on passive tags (PIT tags, coded-wire tags, T-bar anchor tags, fin clips, etc.) is the high capture probabilities possible with this method, which in turn reduces the number of tagged animals required. | iron gate dam, survival, migration behavior, habitat use, tagging | |
2006 | Thomas B. Hardy, Thomas Shaw, R. Craig Addley, Gary E. Smith, Michael Rode, Michael Belchik | Validation of Chinook fry behavior‐based escape cover modeling in the lower Klamath River | Technical Report | Salmon | Lower Klamath | 18010209 | An emerging trend in the state-of-the-art instream flow assessment applications is the use of three-dimensional channel topography coupled with two-dimensional hydrodynamic models. These components are most often integrated with biological response functions for depth, velocity, and substrate to simulate physical habitat for target species and life stages. These approaches typically involve the simple extension of the one-dimensional conceptual habitat models represented by the Physical Habitat Simulation System (PHABSIM) developed by the U.S. Fish and Wildlife Service (Stalnaker, 1995). However, as demonstrated in this paper, the physical habitat based template represented by high-resolution channel topography and two-dimensional hydrodynamic model outputs can extend these simple conceptual models of habitat to incorporate additional behavior-based decision rules. The approach demonstrated in this paper evaluates the spatial suitability of physical habitat for chinook fry based on the incorporation of behavioral rule sets associated with instream object cover (i.e., velocity refuges) and in-water escape cover type and distance. Simulation results are compared to simplistic based physical habitat simulations using only depth, velocity, and substrate and validated against independent fish observation data. Results demonstrate that the functional relationship between predicted habitat and discharge utilized in many instream flow assessments is significantly different when the additional behavior-based decision rules are applied. | Chinook Salmon, modeling, chinook fry | |
2005 | Jefferson T. Hinke, George M. Watters, George W. Boehlert, Paul Zedonis | Ocean habitat use in autumn by Chinook salmon in coastal waters of Oregon and California | Technical Report | Salmon | United States | Describing the ocean habitats used by Chinook salmon Oncorhynchus tshawytscha is an important step towards understanding how environmental conditions influence their population dynamics. We used data from archival tags that recorded time, temperature and pressure (depth) to define the coastal habitats used by Chinook near Oregon and California during the autumns of 2000, 2002 and 2003. We used a clustering algorithm to summarize the data set from each year and identified 4 general habitats that described the set of ocean conditions used by Chinook. The 4 habitats, defined primarily by depth and the time of day that these depths were occupied, were characterized as (1) shallow day, (2) shallow night, (3) deep and (4) deepest. The definitions and use of each habitat were similar across years and the thermal characteristics of all habitats included water temperatures between 9 and 12°C. This temperature range provided the best indicator of Chinook habitat in the coastal ocean. Chinook used 9 to 12°C water at least 52% of the time. Less than 10% of surface waters within the area where Chinook were released and recovered provided these temperatures. Cross sections of subsurface temperatures suggest that between 25 and 37% of the coastal water column was available to Chinook and contained water in the 9 to 12°C range. These results support hypotheses that link salmon-population dynamics to ocean temperatures. Continued monitoring of surface and subsurface thermal habitats may be useful for assessing the extent and quality of conditions most likely to sustain Chinook salmon populations. | Chinook Salmon, Ocean Habitat | ||
1989 | D.V. Buchanan, A.R. Hemmingsen, D.L. Bottom, R.A. French, K.P. Currens | Native Trout Project: 1 October 1988 to 30 September 1989 | Technical Report | Redband Trout | Upper Klamath | 18010203 | Review available literature on the zoogeography and ecology of trout populations in the western United States and the implications for trout management. Review literature and historical accounts of the physical characteristics of native stream ecosystems and habitats in the region and changes in these conditions that have occurred since European settlement. Prepare a standard survey for interviewing Oregon Department of Fish and Wildlife (ODFW) biologists and other resource professionals to evaluate management objectives and review the current status of inventory information for native trout populations and their habitats. | Redband trout, Native trout | |
1991 | L.A. Borgerson | Scale Analysis: October 1, 1989 to September 30, 1991 | Technical Report | Redband Trout, Salmon | This report identifies the rearing origin of coho salmon (wild, hatchery yearling, or hatchery accelerated) spawning in Oregon coastal streams and at hatchery broodstock collection facilities. Determine the age composition and length at age of chinook salmon in Oregon coastal index streams. Determine the age composition and early life history of spring and fall races of chinook salmon in the Rogue River. Determine the age composition of chum salmon spawning in Tillamook Bay and Nestucca River tributaries. Determine the age of maturity, spawning history, and growth rates of native redband trout. Determine the length at age, age frequency, and changes in growth rates of largemouth and smallmouth bass sampled in Oregon rivers, lakes, and reservoirs. | scale analysis | |||
1992 | L.A. Borgerson | Scale Analysis Annual Progress Report: October 1, 1991 to September 30, 1992 | Technical Report | Redband Trout, Salmon, Steelhead/Rainbow Trout | United States | This report identifies the rearing origin of coho salmon (wild, hatchery yearling, or hatchery accelerated) spawning in Oregon coastal streams and at hatchery broodstock collection facilities. Determine the age composition and length at age of chinook salmon in Oregon coastal index streams. Determine the age composition of chum salmon spawning in Tillamook Bay and Nestucca River tributaries. Provide scale analysis support to other research and management projects. Maintain scale archives. | scale analysis | ||
1984 | Jean M. Beyer | Rainbow trout fishery and spawning stock in the Upper Klamath River Wild Trout Area, Copco, California | Academic Article | Redband Trout, Steelhead/Rainbow Trout | Upper Klamath | 18010203 | The rainbow trout fishery in the Upper Klamath River Wild Trout Area was examined in 1981 and 1982. In the spring of 1982, 281 mature rainbow trout were trapped at the mouth of Shovel Creek, the only known spawning tributary to the area. Males were 78 percent age two and females were 89 percent age three. Less than 10 percent of the upstream migrants had scale checks indicating prior spawning and less than 10 percent were recaptured as spent downstream migrants. Spawning success could have been limited by a lack of suitable spawning gravel, dewatering of redds from irrigation diversions, and fine sediments in the redds (13 percent of redd volume less than 0.85 millimeters in diameter) possibly from logging and cattle grazing in the area. The 1982 spawning produced a year class estimated to contribute a maximum of 32,903 fish to the Upper Klamath River. Most emigrated at age 0, and the few older fish rearing in Shovel Creek had slower growth than spawners or creeled fish. Rainbow trout creeled in the Upper Klamath River Wild Trout Area were primarily age one and two, with yearlings entering the fishery in late July. Creeled fish were significantly larger than spawners at back-calculated ages one (p < 0. 05) and two (p <0.01). Catch averaged 0.5 rainbow trout per hour; average fork length was 240 millimeters. Juvenile steelhead stoced in Copco Reservoir (31,000 to 100,312 yearly in 1978 to 1980) possibly contributed to the Upper Klamath River Wild Trout Area creel and/or the Shovel Creek spawning run. | Redband trout, spawning stock | |
2015 | William R. Tinniswood, Michael Harrington | Life History and Monitoring of Upper Klamath-Agency Lakes Adfluvial Redband Trout | Technical Report | Monitoring Programs, Redband Trout | Upper Klamath | 18010203 | Spawning surveys are the primary monitoring tool for monitoring bull trout and anadromous fish species in Oregon (Jacobs et al. 2009, Gallagher et al. 2007, Jacobsen et al. 2014,). Randomized redd counts are utilized to monitor steelhead escapement on coastal Oregon tributaries (Jacobsen et al. 2014). Numerous studies of disparate salmonid species have shown positive significant relationships between redd counts and estimates of escapement (Gallagher et al. 2007), redd counts are strongly correlated with adult escapements (Dunham et al. 2001) and bull trout redd counts can detect a 50% decline in the population over 10 years (Howell and Sankovich 2012). However, redd counts can have significant sources of bias and error (Dunham et al. 2001), 5 year trends in redd counts can be misleading (Howell and Sankovich 2012) and redd counts should be conducted by experienced surveyors (Howell and Sankovich 2012, Muhlfield et al. 2006). | Redband trout, monitoring, bull trout, anadromous fish | |
2010 | William R. Tinniswood, Mary Buckman, Ariel C. Muldoon | Statistical Creel Survey on Upper Klamath and Agency Lakes in 2009 and 2010 | Technical Report | Redband Trout, Suckers | Upper Klamath | 18010203 | A roving type statistical creel survey was performed in Upper Klamath and Agency Lakes in the years 2009 and 2010 during the peak months of angling effort from March-September. Pressure counts and angler interviews were conducted to determine catch, harvest, and catch per unit effort of the trophy redband trout fishery. The purpose of the survey was to collect information to evaluate potential management changes that have been proposed by the public during multiple Sport Fish Regulation meetings. Overall catch rates were similar in 2009 and 2010. Average catch rates for all anglers in 2009 was 0.11 redband trout/hour (9 hours per redband trout) and 0.10 redband trout/hour (10 hours per redband trout). However, boat anglers had much higher catch rates (range: 3.6-8.5 hours per redband trout) than bank anglers (range: 21-58.8 hours per redband trout). Bank angling at Agency Lake during the spring of 2010 was the lowest catch rate ever recorded (58.8 hours per redband trout) while boat angling on Agency Lake during the summer had the highest catch rate ever recorded (3.6 hours per fish). Most redband trout captured in the fishery were released (88% in 2010 and 83% in 2009) with an estimated 729 harvested in 2010 and 943 harvested in 2009 (Total fishery removal 1582 and 1772). Angler effort was estimated at 49,695 hours in 2010 and 57,769 hours in 2009. Average size of redband trout captured in the fishery was 517 mm (20.35 inches). Anglers harvested larger redband trout than average (544 mm, 21.4 inches fork length). Management implications for the future should consider the high catch rate during the summer in Agency Lake and Pelican Bay Area. Water temperatures at the surface can reach 28° C during the summer where redband trout are caught and subsequently released. Gear restrictions might be considered. High catch and release rates were observed by anglers still fishing with worms in Pelican Bay during the summer which can lead to mortality exceeding 20%. | Redband trout | |
2007 | R. Kirk Schroeder, James D. Hall | Redband Trout Resilience and Challenge in a changing landscape | Technical Report | Adaptive Management, Redband Trout, Steelhead/Rainbow Trout, Water Temperature | United States | In September 1996, 85 redband trout enthusiasts gathered at the Malheur Field Station in Harney County, Oregon for a workshop sponsored by the Oregon Chapter of the American Fisheries Society. All of us gathered to talk about the biology and status of redband trout, and to share our appreciation for this diverse fish. Concern about redband trout had been building in the region because of continued drought and the apparent decline of some populations, including the disappearance of redband trout in some streams such as Skull Creek in the Catlow Valley (Howell 1997). The status of redband trout throughout its range was considered to be precarious enough that it had been classified by the U.S. Fish and Wildlife Service as a candidate for being listed as an endangered species, though lack of information about its status or other factors had precluded listing. Thirteen papers from the 1996 workshop are included in these proceedings. Most of them have been revised and updated to include recent data or to report on changes in management. Two additional papers that were not in the workshop have been included because we felt they would complement the other papers. It is our hope that these proceedings will provide a useful resource for those working with or interested in redband trout. Although the workshop used the term “inland rainbow trout” to describe populations of Oncorhynchus mykiss in the Columbia Basin east of the Cascade Mountains and those of the Northern Great Basin (including the Upper Klamath Lake Basin), we choose to use “redband trout” for these proceedings, following Behnke (1992, 2002). One theme that runs through these papers is the tremendous diversity expressed by redband trout; from the habitats they inhabit (ranging from cold mountain rivers to high desert streams) to their diverse life histories that have allowed them to adapt to a wide range of environmental conditions. | Evolutionary Diversity, Genetic Analysis, Endangered Species Act | ||
2007 | Rhine T. Messmer, Roger C. Smith | Adaptive Management for Klamath Lake Redband Trout | Technical Report | Adaptive Management, Redband Trout | Upper Klamath | 18010203 | The upper Klamath River basin trout fishery consistently produces redband trout Oncorhynchus mykiss that exceed 4.5 kg. It is among the finest trout fisheries in the United States. The redband trout of the upper Klamath River basin have evolved in harsh environmental conditions and may be uniquely adapted to the habitats found in Upper Klamath and Agency lakes. These redband trout also have developed behavioral and life history characteristics that enable them to inhabit the highly eutrophic waters of the Klamath Basin. The management of Klamath Lake redband trout has evolved from the early 1920s, when large numbers of hatchery trout were stocked to supplement consumptive recreational fisheries, to the 1990s, when natural production, habitat protection and enhancement, and conservative angling regulations were used to provide for trophy redband trout fisheries. This evolution in management resulted from evaluating hatchery trout stocking programs and collecting information on stock-specific disease resistance, life history, and genetics. In addition, changes were made in Oregon Department of Fish and Wildlife trout management policies that emphasized the importance of native fish. Fish managers should continue to collect new information critical for sound, biologically based management of redband trout, and to incorporate this information into management plans. | Redband trout, adaptive management | |
2016 | Interior Redband Conservation Team | Conservation Strategy for Interior Redband (Oncorhynchus mykiss subsp.) in the States of California, Idaho, Montana, Nevada, Oregon and Washington | Technical Report | Redband Trout | United States | This document provides goals and objectives for Redband conservation across its range, and specific stepwise goals, objectives and actions for each of the eight Redband Geographic Management Units (GMUs). When implemented, these measures significantly address the needed conservation efforts described above. As described in some of the GMU sections of this document, before specific conservation actions can be prescribed, additional sampling is needed to characterize the genetic status of these populations. | conservation, redband trout | ||
2002 | A. Kurt Gamperl, Kenneth J. Rodnick, Heather A. Faust, Emilee C. Venn, Max T. Bennett, Larry I. Crawshaw, Ernest R. Keeley, Madison S. Powell, Hiram W. Li | Metabolism, Swimming Performance, and Tissue Biochemistry of High Desert Redband Trout (Oncorhynchus mykiss ssp.): Evidence for Phenotypic Differences in Physiological Function | Academic Article | Redband Trout, Water Temperature | United States | Redband trout (Oncorhynchus mykiss ssp.) in southeastern Oregon inhabit high-elevation streams that exhibit extreme variability in seasonal flow and diel water temperature. Given the strong influence and potential limitations exerted by temperature on fish physiology, we were interested in how acute temperature change and thermal history influenced the physiological capabilities and biochemical characteristics of these trout. To this end, we studied wild redband trout inhabiting two streams with different thermal profiles by measuring (1) critical swimming speed (Ucrit) and oxygen consumption in the field at 12 and 24C; (2) biochemical indices of energy metabolism in the heart, axial white skeletal muscle, and blood; and (3) temperature preference in a laboratory thermal gradient. Further, we also examined genetic and morphological characteristics of fish from these two streams. | Redband trout, metabolism, | ||
2009 | Kenneth P. Currens, Carl B. Schreck, Hiram W. Li | Evolutionary Ecology of Redband Trout | Academic Article | Redband Trout | United States | We examined genetic differences at 29 enzyme encoding loci among 10,541 rainbow trout Oncorhynchus mykiss from 240 collections throughout the species’ range, including redband trout (i.e., several rainbow trout subspecies) in pluvial lake basins of the northern Great Basin that have had largely internal drainage with no connection to the Pacific Ocean. Differences among groups accounted for 29.2% of the genetic variation. Although we observed major genetic differences between coastal and inland groups (10.7%), which are currently considered to represent the major phylogenetic division in the species, we found that the greatest evolutionary divergence (19.7%) was related to persistence of three major river systems: the upper Sacramento, Klamath, and Columbia rivers. Genetic traits of redband trout from the northern Great Basin, where we found distinct subspecies or races, indicated that over millennia these pluvial habitats were sources of evolutionary diversity associated with large river systems rather than completely isolated refugia. However, redband trout did not constitute a distinct monophyletic group. Based on our data, redband trout of the Goose Lake, Warner Valley, and Chewaucan basins were distinct genetic races that were part of the diverse complex of Sacramento redband trout O. mykiss stonei. Harney Basin redband trout were a unique genetic race most closely associated with Columbia River redband trout O. mykiss gairdneri. White River and Fort Rock redband trout were associated with the Columbia River but showed allelic divergence comparable with that among other subspecies. Upper Klamath Lake rainbow trout included a previously unrecognized group associated with populations in the headwaters of the basin and a different subspecies from type locations for Upper Klamath Lake redband trout O. mykiss newberrii (i.e., Upper Klamath Lake and the upper Klamath River). | Redband trout, evolutionary ecology | ||
2005 | R. Craig Addley, Bill Bradford, Jennifer Ludlow | Klamath River Bioenergetics Report | Technical Report | Aquatic Habitat / Invertebrates / Insects, In-Stream Flow / Flow Regime, Redband Trout, Water Temperature | Klamath Basin | 180102 | The results of the bioenergetics foraging model and P value model indicate that food availability is more important than water temperature as a factor in trout growth in the J.C. Boyle peaking reach for the Existing Conditions, WOP and Steady Flow scenarios. There is relatively little difference in four-year growth predictions between Existing Conditions, Steady Flow, and WOP scenarios in the J.C. Boyle peaking reach when only changes in water temperature were incorporated into the modeling. This happened because there was only a relatively small difference in daily temperatures between the three scenarios relative to the temperature-related growth requirements of trout. The biggest effect on predicted growth came from the assumption that increased invertebrate drift/ food availability would occur under the WOP and Steady Flow scenarios. The most uncertainty exists in this parameter, however. Based on the literature, food would likely increase, but the amount is uncertain. The invertebrate drift densities observed below Iron Gate dam or in the Keno reach provide a reasonable upper bound on the increase that could occur in the J.C. Boyle peaking reach. Actual drift density for the WOP and Steady Flow scenarios may be somewhere between what they are now with Existing Conditions and this upper bound. | Bioenergetics | |
2017 | National Fish and Wildlife Fund (NFWF) | National Fish and Wildlife Fund (NFWF) grants page | Website | Habitat Restoration, Riparian Species & Wildlife | United States | The National Fish and Wildlife Fund (NFWF) provides funding on a competitive basis to projects that sustain, restore, and enhance our nation's fish, wildlife, and plants and their habitats. Each of our initiatives has a business plan developed by scientists and other experts and approved by our Board of Directors. Grants are available to support the actions identified in the business plan. Additional programs support diverse projects for wildlife and habitat conservation across the country. Search the grants library for descriptions, interim reports, photos, and final reports of their grants in the Klamath Basin. | conservation | ||
2010 | ODFW | Status Klamath Rainbow/Rainbow Trout Dams in Scenario. Klamath River Rainbow Trout Peaking Reach Klamath River | Technical Report | Dam Operations, Dam Removal, Redband Trout, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The purpose of this document is to provide an outline for a presentation by ODFW staff to the expert panel on redband, rainbow and bull trout which will provide input for the secretarial determination of whether to remove the four hydroelectric dams on the Klamath River. The expert panel will evaluate if the continued operation of the four main stem hydro electric facilities is in the best interest of the people of the United States and if fisheries will benefit. | Redband trout, rainbow trout, bull trout | |
2005 | ODFW | Upper Klamath Basin Redband Trout SMU | Technical Report | Redband Trout | Upper Klamath | 18010206 | The Upper Klamath Lake basin contains the remnants of Pleistocene Lake Modoc, which redband trout may have entered from interior connections. Currently, the Upper Klamath Lake Basin supports the largest and most functional adfluvial redband trout populations of Oregon interior basins, however, some populations are severely limited in distribution and abundance by habitat quality and non-native species. The SMU is comprised of 10 populations that vary in life history, genetics, disease resistance, and status. Eighty percent of the populations meet three of the six interim criteria, thereby classifying this SMU as ‘at risk’. Limited data sets and inferences from other information for populations in this SMU provide a qualified level of confidence in the assessment of the interim criteria. | Redband trout | |
2005 | ODFW | Upper Klamath Basin Redband Trout | Technical Report | Redband Trout | Upper Klamath | 18010206 | The Upper Klamath Lake basin contains the remnants of Pleistocene Lake Modoc, which redband trout may have entered from interior connections. Currently, the Upper Klamath Lake basin supports the largest and most functional adfluvial redband trout populations of Oregon interior basins, however, some populations are severely limited in distribution and abundance by habitat quality and non-native species. The SMU is comprised of ten populations that vary in life history, genetics, disease resistance, and status. Eighty percent of the populations meet three of the six interim criteria, thereby classifying this SMU as 'at risk'. Limited data sets and inferences from other information for populations in this SMU provide a qualified level of confidence in the assessment of the interim criteria. | Redband trout | |
2015 | Clint C. Muhlfeld, Shannon E. Albeke, Stephanie L. Gunckel, Benjamin J. Writer, Bradley B. Shepard, Bruce E. May | Status and Conservation of Interior Redband Trout in the Western United States | Academic Article | Redband Trout | United States | In this article we describe the current status and conservation of interior (potamodromous) Redband Trout Oncorhynchus mykiss sspp. throughout its range in the western United States using extant data and expert opinion provided by fish managers. Redband Trout historically occupied 60,295 km of stream habitat and 152 natural lakes. Currently, Redband Trout occupy 25,417 km of stream habitat (42% of their historical range) and 124 lakes or reservoirs. Nonhybridized populations are assumed to occupy 11,695 km (46%) of currently occupied streams; however, fish from only 4,473 km (18%) have been genetically tested. Approximately 47% of the streams occupied by Redband Trout occur on private land, 45% on government lands, and 8% in protected areas. A total of 210 Redband Trout populations, occupying 15,252 km of stream habitat (60% of the current distribution) and 95,158 ha of lake habitat (52%), are being managed as “conservation populations.” Most conservation populations have been designated as weakly to strongly connected metapopulations (125; 60%) and occupy much more stream length (14,112 km; 93%) than isolated conservation populations (1,141 km; 7%). The primary threats to Redband Trout include invasive species, habitat degradation and fragmentation, and climate change. Although the historical distribution of interior Redband Trout has declined dramatically, we conclude that the species is not currently at imminent risk of extinction because it is still widely distributed with many populations isolated by physical barriers and active conservation efforts are occurring for many populations. However, the hybridization status of many populations has not been well quantified, and introgression may be more prevalent than documented here. | Redband trout, conservation, status | ||
2006 | Steven E. Jacobs, Steven J. Starcevich, William Tinniswood | Effects of Impoundments and Hydroelectric Facilities on the Movement and Life History of Redband Trout in the Upper Klamath River: A Summary and Synthesis of Past and Recent Studies | Technical Report | Dam Operations, Redband Trout | Upper Klamath | 18010206 | The physical and ecological environment of redband trout in the Upper Klamath River has been altered by hydroelectric dams. Four dams and five distinct river reaches are currently present in the 48-mile section between the outflow of Upper Klamath Lake and the Oregon- California Border. Spencer Creek, which enters the Klamath River just upstream of J.C. Boyle Dam, is an important spawning area and source of juvenile recruitment for redband trout in the upper Klamath River. In 1959, the year after J.C. Boyle Dam was completed, fish ladder trap counts showed adult redband trout migrated upstream in the Klamath River in large numbers to spawn in Spencer Creek. By 1962, trap counts had declined by at least 90%. Despite this decline, studies conducted in the late 1980s showed that a significant spawning run and juvenile outmigration persisted in Spencer Creek. These findings left questions about the adult and juvenile life history of Spencer Creek spawning population. We used radio telemetry and PITtag technology to address these questions. Our results suggest that, since the construction of J. C. Boyle Dam, upstream movement of adult redband trout to Spencer Creek has been eliminated and movement of juveniles from Spencer Creek downstream past the dam has been restricted to periods when spill occurs. We also found that the Keno Reach of the Klamath River is the main source of spawning adults in Spencer Creek. In total, these results suggest that diversity of life histories displayed by Spencer Creek spawners has been constricted by the construction of J.C. Boyle Dam This reduction in life history diversity has likely reduced trout abundance downstream of the dam. These results also show that the extant adult life history is composed of a downstream spawning migration in Klamath River to Spencer Creek and a substantial juvenile upstream migration to the Keno Reach. | Redband trout, Impoundments, Hydroelectric Facilities | |
2006 | Richard W. Stocking, Richard, A. Holt, J. Scott Foott, Jerri L Bartholomew | Spatial and Temporal Occurrence of the Salmonid Parasite Ceratomyxa shasta in the Oregon–California Klamath River Basin | Academic Article | Redband Trout, Salmon | Klamath Basin | 180102 | The parasite Ceratomyxa shasta has been implicated as a significant source of salmonid mortality in the lower Klamath River, California (i.e., below Iron Gate dam). A study of the prevalence of C. shasta and its geographic and temporal distribution throughout the Klamath River basin was conducted to determine when and where juvenile salmonids encounter lethal parasite doses. Susceptible rainbow trout Oncorhynchus mykiss were exposed to C. shasta 3–4 d at seven locations in the Klamath River between Beaver Creek and Keno Reservoir in April, June, July, September, and November 2003. Individuals from a Klamath River strain of fall Chinook salmon O. tshawytscha were held in three locations in the upper Klamath River in April, June, and July. In June 2004, rainbow trout were exposed to the parasite for 4 d at 18 locations from Klamath Lake to the mouth of the Klamath River, including several major spawning tributaries; one exposure occurred in the lower Klamath River. Rainbow trout mortality due to infection for groups exposed in the upper Klamath River was lower (,8.0%) and delayed (mean time to death, 40–110 d) in comparison with that in groups exposed in the lower Klamath River (.98%; mean time to death, 33–36 d). Experimental fall Chinook salmon did not become infected in the upper Klamath River, but infection was detected in Chinook salmon exposed in the lower Klamath River, nearly 50% of these succumbing to infection. These dramatic differences in mortality between the upper and lower Klamath River could not be explained by differences in water temperatures during exposure and are probably a result of differences in infectious dose. Lack of infection in groups exposed in tributaries supports the hypothesis that the parasite life cycle and the invertebrate host are largely confined to the main-stem Klamath River. | parasite, Ceratomyxa shasta | |
2006 | ODFW | Preliminary comments and 10(J) Recommended terms and conditions for Pacificorp’s Klamath Hydroelectric Project | Formal Agreement | Dam Operations, Other threatened fishes, Redband Trout, Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | This document provides the Oregon Department of Fish and Wildlife’s (ODFW) Section 10(j) Recommended Terms, and Conditions for relicensing of PacifiCorp’s relicensing of the Klamath Hydroelectric Project (Project) Federal Energy Regulatory Commission (FERC) Project No. 2082. Our comments are organized first with a section describing the authorities that guide ODFW’s participation in this relicensing process, followed by comments and recommended terms and conditions for the new license for operation of the Project. These terms and conditions may be modified as needed with the issuance of the FERC Draft Environmental Impact Statement, and as new information and additional study reports from the Licensee, federal, state and tribal entities are made available during the remainder of the relicensing process. | ODFW, FLA, relicensing | |
2006 | Thomas H. Williams, Eric P. Bjorkstedt, Walt G. Duffy, Dave Hillemeier, George Kautsky, Tom E. Lisle, Mike McCain, Mike Rode, R. Glenn Szerlong, Robert S. Schick, Matthew N. Goslin, Aditya Agrawal | Historical Population Structure of Coho Salmon in the Southern Oregon/Northern California Coasts Evolutionary Significant Unit | Technical Report | Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The main purpose of technical recovery planning for Pacific salmon and steelhead is to produce biologically based viability criteria for listed Evolutionarily Significant Units (ESUs) that will be considered in setting recovery goals. These viability criteria, and the analyses from which they stem, must refer to specific populations and population groups (i.e., populations or groups of populations within a ESU). The purpose of this report is to describe the historical population structure of coho salmon in the Southern Oregon/Northern California Coast (SONCC) ESU in order to guide viability analyses, and to provide a historical context for other parties interested in recovering coho salmon in the geographic region. We collected and examined available information relevant to the question of population structure of coho salmon in the SONCC ESU, and we present that information here. | SONCC, historical populations, coho salmon, air temperature | |
2016 | California Department of Fish and Wildlife | Klamath River Cooperative Spawner Survey Overview Report | Technical Report | Salmon | Klamath Basin, Scott River | 180102 | The middle Klamath Cooperative Spawning Ground Surveys (SGS) originated in 1986 and were originally funded by the Klamath River Basin Conservation Area Restoration Program (the Klamath Act) as part of a comprehensive plan to restore anadromous fish in the Klamath Basin. Federal legislation supporting the Klamath Act expired in 2006 and was not reauthorized by Congress. Since that time the U.S. Fish and Wildlife Service has continued to contribute substantial funding to the SGS effort using discretionary funding from their annual budget. The SGS collect data annually on Klamath River Fall Chinook (KRFC) spawning in natural areas for fishery management purposes. SGS cooperators include the U.S. Forest Service, U.S. Fish and Wildlife Service, Yurok Tribe, Karuk Tribe, Quartz Valley Tribe, Northern California Resource Center, Siskiyou Resource Conservation District, Mid-Klamath Watershed Council, Salmon River Restoration Council, the California Department of Fish and Wildlife and local schools and volunteers. This report describes the areas surveyed by the SGS and how the data are generally obtained and applied in the annual management of KRFC. | Chinook Salmon, fall chinook run, spawning success, Klamath Tributaries, Klamath Mainstem, SGS | |
2013 | NOAA | Instream Candidate Actions Table Mid Klamath Master Spreadsheet | Tabular Data | Dam Removal, In-Stream Flow / Flow Regime, Riparian Species & Wildlife, Salmon, Sediment & Geomorphology, Steelhead/Rainbow Trout, Water Quality | Mid Klamath, Shasta River, Scott River | 180102 | Instream Candidate Actions Table Mid Klamath Master Spreadsheet of applicable goals and objectives, action types, current projects, proposed projects, specific project to be accomplished and comments and other species concerns. | Coho salmon, fish passage, floodplain connectivity | |
2016 | Steven Stenhouse, Rosa Albanese and William R. Chesney | Three Year Report 2013-2015 Shasta and Scott River Juvenile Salmonid Outmigrant Study | Technical Report | In-Stream Flow / Flow Regime, Salmon, Steelhead/Rainbow Trout, Water Temperature | Shasta River, Scott River | 18010209 | Since 2000, the Anadromous Fisheries Resource Assessment and Monitoring Program (AFRAMP) conducted by the Yreka office of the California Department of Fish and Wildlife has operated rotary screw traps in the Scott and Shasta Rivers of the greater mid-Klamath River basin for the purpose of generating population estimates for out-migrating juvenile salmon. Described here are the results obtained during the 2013-2015 sampling seasons. Using rotary screw traps, all age classes of outmigrating Chinook salmon (Oncorhynchus tshawytscha), coho salmon (O. kisutch), and steelhead trout (O. mykiss), as well as a variety of native and non native fish species were sampled over these three years. Only Chinook and coho salmon data will be presented in this report. Using the Carlson method for mark and recapture of salmonids, trap efficiencies and population estimates were produced on a weekly basis. Established age-length cutoffs for each species were used to determine fish age. In-stream conditions such as flow and water temperature were also monitored. Weekly estimates for the smolt class of all species were compared to show multi-year population trends. Using multi-year seasonal production estimates and coho salmon returns to the Shasta River, adult survival and smolt production estimates were calculated for Shasta River coho. In 2013, it was estimated a total of 5,218,270 0+ Chinook, 1,930 0+ coho, and 494 1+ coho emigrated from the Shasta River during the sampling period. It was also estimated for the same sample period that 656,031 0+ Chinook, 1,290 0+ coho, and 7,927 1+ coho emigrated from the Scott River. In 2014, a total of 4,744,838 0+ Chinook, 10,752 0+ coho, and 850 1+ coho emigrated from the Shasta River. Additionally, 423,085 0+ Chinook, 760 1+ Chinook, 16,962 0+ coho, and 5,708 1+ coho, emigrated from the Scott River. It was estimated that for the period sampled in 2015, a total of 2,901,966 0+ Chinook, 851 0+ coho, and 6,279 1+ coho emigrated from the Shasta River. | Bio-sampling, Age Determination, Trap Efficiency | |
2016 | Christopher Adams and Caitlin Bean | Shasta River Brood Year 2012 Juvenile Coho Salmon PIT Tagging Study | Technical Report | Aquatic Habitat / Invertebrates / Insects, Salmon | Shasta River | 18010209 | This report summarizes PIT tag data collected on brood year 2012 coho in the Shasta River (the progeny of adult coho that spawned in 2012). The key findings of this study were: 1. Overall known survival of PIT tagged BY2012 coho, from the time they were tagged in upper Shasta River in 2013 to outmigration into the Klamath River in the spring of 2014, was 33%. 2. Over 70% of the coho fry tagged in the upper Shasta River downstream of Big Springs Creek migrated upstream in May and June 2013 when stream temperatures increased to ~20 C. 3. Coho utilized a small spring complex adjacent to the Shasta River downstream of Parks Creek as short term thermal refugia during May and June 2013. 4. Successful summer rearing occurred in areas with cold spring inflows, including Little Springs Creek. 5. Overall, known survival was lowest during winter with the poorest winter survival occurring in Big Springs Creek. 6. Outmigrating coho smolts that were known to be alive in the upper Shasta River in March 2014 survived to reach the Klamath River at a rate of 90%, which is higher than documented in the BY2010 study (77%). | coho, coho salmon, Shasta River | |
2016 | California Department of Fish and Wildlife | Shasta River Brood Year 2013 Juvenile Coho Salmon PIT Tagging Study | Technical Report | Salmon | Shasta River | 18010209 | This report summarizes passive integrated transponder (PIT) tag data collected on brood year 2013 (BY2013) juvenile coho in the Shasta River (the progeny of adult coho that spawned in 2013). The key findings of this study were: 1. Overall known survival of the 647 BY2013 PIT tagged coho, from the time they were tagged in the upper Shasta River in 2014, to outmigration into the Klamath River in the spring of 2015 was | coho, coho salmon, Shasta River | |
2016 | California Department of Fish and Wildlife | Scott River Brood Year 2013 Juvenile Coho Salmon PIT Tagging Study | Technical Report | Salmon | Scott River | 18010209 | Extremely low flow conditions occurred in the Scott River watershed during the summer and fall of 2013 and 2014, due to the combined effects of drought and irrigation water withdraws. Low flows and disconnected | coho salmon, coho, Scott River | |
2016 | California Department of Fish and Wildife | Little Shasta River-A Compendium of Available Information | Technical Report | Salmon, Steelhead/Rainbow Trout, Water Quality, Water Temperature | Shasta River | 18010209 | The purpose of this document is to provide information regarding the historical and current conditions of the Little Shasta River, tributary to the Shasta River, in Siskiyou County, California. The Shasta River watershed provides spawning and rearing habitat for three salmonid species; Chinook salmon, coho salmon, and steelhead. At one time, the Little Shasta River provided high quality aquatic habitat. However, under current conditions it has elevated water temperatures and goes dry in the summer in the 11-mile-long valley reach. With the listing of coho salmon under both the California and federal endangered species acts it has become a high priority to identify restoration activities that will enhance coho recovery in the watershed and improve habitat conditions for other aquatic species as well. We thought it was important to gather all the historic information available to determine how this watershed once functioned. In addition, Department of Fish and Wildlife personnel collected water temperature data over a two-year period to assess the potential for the upper watershed to provide over summering habitat for salmonids. The various pieces of information presented here will inform the question: “what steps would be necessary to restore the Little Shasta River to functioning salmonid habitat?” We do not explicitly answer that question. It is our hope that this information will help land-owners and decision-makers come up with that answer. | Shasta, coho, Chinook, steelhead | |
2013 | Ann Willis, Andrew Nicholas, Carson Jeffres, Mike Deas | Water Resources Management Planning: Conceptual Framework and Case Study of the Shasta Basin | Study (non-Peer Reviewed) | Land Management & Irrigation, Salmon, Steelhead/Rainbow Trout, Water Allocation & Rights, Water Quality, Water Temperature | Shasta River | 18010209 | northern California. Historically, the Shasta River was one of the most productive salmon streams in California. Cold and nutrient-rich groundwater springs provided nearly ideal aquatic habitat conditions supportive of large Chinook and coho salmon populations. However, more than a century of aquatic and riparian habitat degradation along the Shasta River and its tributaries has resulted in dramatic declines in wild salmon populations, and particularly the federally threatened coho salmon. Elevated water temperature is the primary factor limiting coho abundance in the Shasta River, and restoration of cold-water flows is the key to coho population recovery. The observed decline of coho in the Shasta River coincided with the development of surface and groundwater sources in support of irrigated agricultural activities throughout the Shasta Basin. Water development led to reductions in the quantity and quality of cold-water habitats required by rearing coho salmon. Developing a collaborative approach to water resource management is critical to both recovering coho salmon and maintaining a viable agricultural community with the Shasta Basin – without involving all stakeholders, successful solutions cannot be developed for either user group. Key to such an approach is the generation of a comprehensive water resources management plan that identifies collaborative solutions to providing water of suitable quantity and quality, at the appropriate place and time, such that the water needs of both the aquatic ecosystem and agricultural community are met. | Chinook, coho, water temperature, water quantity | |
2011 | Devon E. Pearse , Stephanie L. Gunckel, & Steven E. Jacobs | Population Structure and Genetic Divergence of Coastal Rainbow and Redband Trout in the Upper Klamath Basin | Academic Article | Redband Trout, Steelhead/Rainbow Trout | Upper Klamath | 18010206 | Freshwater-resident coastal rainbow trout Oncorhynchus mykiss irideus and the anadromous form of the subspecies, coastal steelhead (summer and winter runs), are present throughout the lower Klamath River–Trinity River system. Although coastal steelhead and other anadromous salmonids historically migrated into the Upper Klamath Basin (which encompasses the upper Klamath River and Upper Klamath Lake) and associated tributaries, the construction of Copco Dam in 1918 and Iron Gate Dam in 1962 stopped all upstream migration of fish past these barriers. In the Upper Klamath Lake basin, native Upper Klamath Lake redband trout O. mykiss newberrii are found along with coastal rainbow trout that were trapped above the dams or stocked from hatchery sources. However, relatively little is known about the genetic relationships among the O. mykiss populations within the Upper Klamath Basin. A population genetic analysis based on data from 17 variable microsatellite loci was conducted for samples collected in the Upper Klamath Basin, including rainbow trout and Upper Klamath Lake redband trout (presumably representative of the ancestral coastal and inland lineages) as well as samples of O. mykiss from neighboring inland lake basins. In addition, the Upper Klamath Basin samples were compared with data from O. mykiss populations below Iron Gate Dam. Results demonstrate the presence of distinct inland and coastal genetic lineages as well as divergent lineages represented by samples from the inland lake basins; these results have significant implications for future restoration of O. mykiss in the greater Klamath River–Trinity River system. | redband trout, rainbow trout, steelhead | |
2016 | Steven A. Stenhouse, Amy J. Debrick and William R. Chesney | Scott and Shasta River Juvenile Chinook Salmon Out-Migrant Study | Technical Report | Salmon | Scott River, Shasta River | 18010209 | Since 2000, the Anadromous Fisheries Resource Assessment and Monitoring Program conducted by the Yreka office of the California Department of Fish and Wildlife has operated rotary screw traps in the Scott and Shasta | Chinook, coho, steelehead, outmigrants | |
2006 | Scott River Watershed Council Fish Committee | Limiting Factors Analysis for Coho Salmon and Other Anadromous Fish, Scott River Sub-Basin | Study (non-Peer Reviewed) | Salmon, Steelhead/Rainbow Trout | Scott River | 18010209 | One of the objectives of the Scott River Watershed Council (SRWC) is to conserve and enhance the resources of the Scott River watershed. Anadromous fish are one of those resources. The SRWC wished to better direct its conservation efforts by identifying which activities and conditions in the Scott River watershed caused the greatest harm to anadromous fish. The Fish Committee of SRWC set out to accomplish this by assigning a sub-committee that would use a science-based process known as a limiting factors analysis (LFA). An LFA seeks to identify the most important environmental factors that are causing a population to decline and preventing its recovery. The information can then be used to direct efficient, effective restoration of habitat and improvement of management practices to restore anadromous species. Although the Fish Committee is concerned with steelhead, coho and Chinook salmon, the committee chose coho salmon as the focus of this LFA, because it is the most threatened. Many of the factors that limit coho salmon also limit the other anadromous species, so implementation of restoration actions for coho may help those species as well. The SRWC intends to use this LFA as a template for steelhead and Chinook LFA’s to be completed in the future. The sub-committee compiled of local citizens, landowners and agency representatives began by searching for and reviewing existing LFA’s to find an accepted protocol. It found a variety of approaches, rather than one standard protocol. | Scott River, coho, Chinook, salmon | |
2009 | McBain & Trush, Inc. | Shasta River Instream Flow Methods and Implementation Framework | Technical Report | In-Stream Flow / Flow Regime | Shasta River | 18010209 | The purpose of the project was to evaluate several alternative instream flow methods, then recommend a scientific framework and specific methods for determining instream flow needs to promote salmonid recovery and protection in the Shasta River basin. Quantifying instream flow needs is critical to restoration. Our goal was to recommend a framework best suited for the Shasta River basin that will facilitate compliance with Fish and Game Code 5937 and the Watershed-wide Permitting Program (CDFG 2008). An instream flow needs study must assess the extent to which the natural flow regime can be altered while still ensuring the health of salmonid | Shasta, instream flow | |
2016 | Caitlin N. Jetter and William R. Chesney | Shasta and Scott River Juvenile Salmonid Outmigrant Study, 2016 | Technical Report | Salmon, Steelhead/Rainbow Trout | Scott River, Shasta River | 18010209 | The 2016 Juvenile Salmonid Outmigrant Study is part of the ongoing work conducted annually by the California Department of Fish and Wildlife, Yreka Fisheries Program on the Shasta and Scott rivers in Siskiyou County, California. Using rotary screw traps, all age classes of outmigrating Chinook salmon (Oncorhynchus tshawytscha), coho salmon (Oncorhynchus kisutch), and steelhead trout (Oncorhynchus mykiss) were sampled from 29 January to 1 July of 2016. Mark and recapture trials were conducted multiple times per week to determine trap efficiencies and weekly population estimates. Established age-length cutoffs for each species were used to determine the age of the fish captured. In-stream conditions such as flow and water temperature were also monitored. Weekly estimates for the smolt class of all species were compared to show multi-year population trends. Using multi-year seasonal production estimates and coho salmon returns to the Shasta River, adult survival and smolt production estimates were calculated for Shasta River coho. It was estimated that for the period sampled in 2016, a total of 2,757,850 0+ Chinook, 164 1+ Chinook, 480 0+ coho, 229 1+ coho, 3 (actual number caught) 2+ coho, 11,749 0+ steelhead, 1,665 1+ steelhead, 30,501 2+ steelhead, and 6,045 3+ steelhead emigrated from the Shasta River. It was estimated for this same sample period, 56,634 0+ Chinook, 28 (actual number caught) 1+ Chinook, 14 (actual number caught) 0+ coho, 2,411 1+ coho, 1 (actual number caught) 2+ coho, 97 (actual number caught) 0+ steelhead, 73,540 1+ steelhead, and 44 (actual number caught) 2+ steelhead emigrated from the Scott River. | salmon, coho, Chinook, steelhead, Scott River, Shasta River | |
2009 | William R. Chesney, Christopher C. Adams, Whitney B. Crombie, Heather D. Langendorf, Steven A. Stenhouse and Kristen M. Kirkby | Shasta River Juvenile Coho Habitat & Migration Study | Technical Report | Salmon | Shasta River | 18010209 | Initial surveys of the upper Shasta River between river miles (RMs) 33.72 and 31.98 in April of 2008 determined that 0+ juvenile coho salmon (Oncorhynchus kisutch) were rearing throughout the area surveyed. Age 0+ coho salmon were captured at RM 32 and tagged with passive integrated transponder (PIT) tags in order to study migration behavior and estimate the probability of survival. A rapid increase in the maximum daily water temperatures from 21.4 degrees C in late April to over 24.2 degrees C during four consecutive days in May displaced juvenile coho from three of the four study sites between RMs 32.9 and 33.6. Some of the PIT tagged juvenile coho responded to the increase in water temperature by migrating over 4 miles upstream to areas of cold spring inflow. All observed over-summer rearing habitat utilized by coho was associated with cold springs. | coho, Shasta River | |
2016 | Bruce Eddy, Chip Dale, Elizabeth Osier Moats, William Tinniswood | Klamath Watershed District Stock Status Review of Native Fish | Technical Report | Other threatened fishes, Redband Trout, Salmon, Steelhead/Rainbow Trout, Suckers | Lost River, Upper Klamath, Upper North Fork, Lower North Fork, Lower South Fork, Williamson River, Wood River, Sprague - Sycan, Middle Sprague | 18010206 | This is a technical report summarizing the status of stocks in various sub-basins of the Klamath River watershed (Oregon sub-basins only). | Oregon, bull trout, Jenny Creek sucker, Lost River sucker, Millker Lake lamprey, redband trout, Pit-Klamath brook lamprey, Shortnose sucker, Slender sculpin, Upper Klamath Lake lamprey | |
2005 | Siskiyou County Resource Conservation District | Initial Phase of the Scott River Watershed Council Strategic Action Plan, October 2005 Update | Study (non-Peer Reviewed) | Habitat Restoration, Land Management & Irrigation, Riparian Species & Wildlife, Salmon, Steelhead/Rainbow Trout, Water Allocation & Rights, Water Quality | Scott River | 18010209 | The Scott River Watershed Council (SRWC) has developed this plan for the Scott River watershed for the purpose of cooperatively establishing a common strategy for restoration and management actions. Thus, the Scott River Watershed Strategic Action Plan (SAP) will form the basis for setting priorities for future projects and practices to be supported by the SRWC, the communities within the watershed, and the many funding sources. Watershed, and Historic Watershed Conditions provides a general report which describes the planning process, history of community involvement, agency coordination, overall goals and objectives, and the background of watershed changes over time. The various sections relating to specific watershed topics (such as fisheries, water, riparian and habitat, etc.) include the following items: history; current conditions; findings; reference to | Scott River | |
1997 | Oregon Department of Fish and Wildlife | Klamath River Basin, Oregon Fish Management Plan | Technical Report | Other threatened fishes, Redband Trout, Steelhead/Rainbow Trout, Suckers | Lost River, Upper Klamath, Upper North Fork, Lower North Fork, Lower South Fork, Williamson River, Wood River, Sprague - Sycan, Middle Sprague | 18010206 | This Klamath River Basin Fish Management Plan, adopted by the Oregon Fish and Wildlife Commission on August 22, 1997, is one of many throughout Oregon that has been prepared by the Oregon Department of Fish and Wildlife (ODFW) to guide fish management within the next ten years. As the name implies, this plan addresses all of the public waters within the Klamath River Basin in Oregon, Figure 1. Streams within the basin have been put in six groupings based on their commonalties, particularly regarding the life history of redband trout. This plan also addresses 22 lakes and reservoirs within the basin. The great majority of these waters are managed by the ODFW's KlamathlLake Fish District, but the far western parts of the basin, including Howard Prairie and Hyatt reservoirs, are managed by the Upper Rogue Fish District. This plan contains four major sections: Habitat Management, Fish Management, Fish Management Direction and Alternatives, and Angler Access. In addressing these subjects, it is not intended to be an exhaustive compilation of information on these basin resources. Rather, it is intended to be an adequate overview with sufficient detail to guide decisions and future management. The Habitat Management section addresses the history of the basin and its present | plan, Oregon, fish | |
2014 | NOAA | Final Recovery Plan for the Southern Oregon/ Northern California Coast Evolutionarily Significant Unit of Coho Salmon (Oncorhynchus kisutch) (SONCC) | Technical Report | Aquatic Habitat / Invertebrates / Insects, Habitat Restoration, Salmon | Klamath Basin, Lower Klamath | 180102 | Thousands of coho salmon once returned to spawn in the rivers and streams of Northern California and Southern Oregon. Not long ago, these watersheds provided conditions that supported robust and resilient populations of coho salmon that could persist under dynamic environmental conditions. The combined effects of fish harvest, hatcheries, hydropower operations, and habitat alterations caused by land management led to declines in these populations. The National Marine Fisheries Service’s (NMFS) evaluation of declining coho salmon abundance and productivity, as well as range reductions and diminished life-history diversity, supported the decision to list the Southern Oregon/Northern California Coast (SONCC) Evolutionarily Significant Unit (ESU) of coho salmon as a threatened species under the Endangered Species Act (ESA) in 1997, a decision that was reaffirmed in 2005. Recovery can only be achieved through coordinated efforts to build strong conservation partnerships. Conservation partners may be individuals, groups, and government or nongovernment organizations including NMFS, industry, or tribes who have an interest in the recovery of SONCC coho salmon. The ESA envisions recovery plans as the central organizing tool for guiding each species’ recovery process. The recovery plan is a road map to recovery – it lays out where we need to go and how best to get there. The SONCC Coho Salmon ESU recovery plan (Plan) was developed to provide a roadmap to recovery of this species which conservation partners can follow together. Specifically, the Plan is designed to guide implementation of prioritized actions needed to conserve and recover the species by providing an informed, strategic, and voluntary approach to recovery that is based on the best available science. Use of a recovery plan ensures that recovery efforts target limited resources effectively and efficiently. | NOAA, SONCC, spawning habitat, coho salmon | |
2017 | U.S. Geological Survey | Upper Klamath Basin Collaborative Groundwater Monitoring | Website | Monitoring Programs | Upper Klamath, Middle Sprague, Sprague - Sycan, Lost River, Williamson River, Upper North Fork, Lower North Fork, Lower South Fork | 180102 | This web page provides access to current and historic groundwater-level data collected by monitoring partners, as well as water-level graphs and maps showing net water-level changes between any two time periods. Data for individual wells are filtered to remove measurements taken during active pumping because they do not accurately represent conditions in the aquifer. | groundwater, monitoring | |
2017 | Bureau of Reclamation | Bureau of Reclamation Klamath Basin Area Office | Website | Land Management & Irrigation, Water Allocation & Rights | Upper Klamath, Lost River, Williamson River, Middle Sprague, Sprague - Sycan | 180102 | This is the website for the Klamath Project of the Bureau of Reclamation. | irrigation | |
2017 | Bureau of Reclamation | Bureau of Reclamation | Website | Dam Operations, Water Allocation & Rights | Klamath Basin, United States | 180102 | This website is for the Bureau of Reclamation. Established in 1902, the Bureau of Reclamation is best known for the dams, powerplants, and canals it constructed in the 17 western states. These water projects led to homesteading and promoted the economic development of the West. Reclamation has constructed more than 600 dams and reservoirs including Hoover Dam on the Colorado River and Grand Coulee on the Columbia River. Today, we are the largest wholesaler of water in the country. We bring water to more than 31 million people, and provide one out of five Western farmers (140,000) with irrigation water for 10 million acres of farmland that produce 60% of the nation's vegetables and 25% of its fruits and nuts. Reclamation is also the second largest producer of hydroelectric power in the United States. Our 53 powerplants annually provide more than 40 billion kilowatt hours generating nearly a billion dollars in power revenues and produce enough electricity to serve 3.5 million homes. Picture of Hoover DamToday, Reclamation is a contemporary water management agency with a Strategic Plan outlining numerous programs, initiatives and activities that will help the Western States, Native American Tribes and others meet new water needs and balance the multitude of competing uses of water in the West. Our mission is to assist in meeting the increasing water demands of the West while protecting the environment and the public's investment in these structures. We place great emphasis on fulfilling our water delivery obligations, water conservation, water recycling and reuse, and developing partnerships with our customers, states, and Native American Tribes, and in finding ways to bring together the variety of interests to address the competing needs for our limited water resources. | Reclamation | |
2017 | U.S. Geological Survey | USGS | Website | In-Stream Flow / Flow Regime, Water Quality, Water Temperature | United States, Klamath Basin | 180102 | The USGS website includes real time and historic data sets and technical reports for numerous monitoring locations throughout the Klamath Basin. | data | |
2017 | Trout Unlimited | Trout Unlimited: California and Klamath Program | Website | Habitat Restoration | Klamath Basin | 180102 | Website links to Trout Unlimited's California and Klamath Program. Includes a listing of associated staff. | conservation | |
2017 | North Coast Regional Water Quality Control Board | North Coast Regional Water Quality Control Board | Website | Water Allocation & Rights, Water Quality | Lower Klamath, Mid Klamath, Trinity River, Scott River, Shasta River | 18010209 | This is the website for the North Coast Regional Water Quality Control Board. There are nine regional water quality control boards statewide. The nine Regional Boards are semi-autonomous and are comprised of seven part-time Board members appointed by the Governor and confirmed by the Senate. Regional boundaries are based on watersheds and water quality requirements are based on the unique differences in climate, topography, geology and hydrology for each watershed. Each Regional Board makes critical water quality decisions for its region, including setting standards, issuing waste discharge requirements, determining compliance with those requirements, and taking appropriate enforcement actions. | water quality, water rights | |
2017 | State of Oregon | Oregon Watershed Restoration Inventory | Website | Habitat Restoration, Riparian Species & Wildlife | Upper Klamath, Wood River, Williamson River, Lost River, Sprague - Sycan, Middle Sprague, Lower North Fork, Lower South Fork, Upper North Fork | 180102 | The Oregon Watershed Restoration Inventory (OWRI) originated at the onset of the Oregon Plan for Salmon and Watersheds to track Oregonians' voluntary efforts to restore habitats for salmon and wildlife. While the database is managed by OWEB and contains information about grants funded by OWEB, the majority of the OWRI entries represent voluntary actions of private citizens and landowners who have worked in partnership with federal, state, and local groups to improve aquatic habitat and water quality conditions. OWRI is the single largest restoration information database in the Western United States with nearly 17,000 completed projects reported since 1995. This is an online reporting tool. | Oregon, habitat restoration | |
2015 | Mary Claire Kier, John Hileman, Steve Cannata | Annual Report: Trinity River Basin Salmon and Steelhead Monitoring Project: Chinook and Coho Salmon and Fall-Run Steelhead Run-Size Estimates Using Mark-Recapture Methods 2014-2015 Season | Technical Report | Salmon, Steelhead/Rainbow Trout, Trinity River | Trinity River | 18010209 | The California Department of Fish and Wildlife's Trinity River Project conducted tagging and recapture operations from June 2014 through March 2015 to produce run-size, angler harvest, and spawner escapement estimates of spring-run (spring Chinook) and fall-run Chinook salmon [fall Chinook (Oncorhynchus tshawytscha)], coho salmon (O.kisutch), and fall steelhead (O. mykiss) in the Trinity River basin. The monitoring results | weir, Trinity, run-size | |
2017 | California Department of Fish and Wildlife | California Department of Fish and Wildlife Fisheries Branch | Website | Habitat Restoration, Hatcheries, Salmon, Steelhead/Rainbow Trout | Lower Klamath, Mid Klamath, Trinity River, Scott River, Shasta River | 18010209 | Website links to the Fisheries Branch of the California Department of Fish and Wildlife. Website includes information on species conservation and recovery, important documents, and the Fisheries Restoration Grants Program. | salmonids, Chinook salmon, coho salmon, steelhead | |
2017 | Dr. Darren Ward | Humboldt State University, Department of Fisheries Biology-Dr. Darren Ward: Publications and Research | Website | Estuary of the Klamath, Mainstem Klamath River, Salmon, Steelhead/Rainbow Trout | Lower Klamath, Mid Klamath | 18010209 | Website links to publications authored by Dr. Darren Ward, professor at Humboldt State University's Department of Fisheries Biology. Click the menu on the left to view current research, some of which is also applicable to Klamath River salmonids (although downloadable work products are not listed at this time). Dr. Ward can be reached via email at darren.ward@humboldt.edu to discuss additional questions related to his research projects. | salmonids, salmon, steelhead | |
2014 | Rebecca M. Quinones, Marcel Holyoak, Michael L. Johnson, Peter B. Moyle | Potential Factors Affecting Survival Differ by Run-Timing and Location: Linear Mixed-Effects Models of Pacific Salmonids (Oncorhynchus spp.) in the Klamath River, California | Academic Article | Hatcheries, Salmon, Steelhead/Rainbow Trout | Lower Klamath, Mid Klamath | 18010209 | Understanding factors influencing survival of Pacific salmonids (Oncorhynchus spp.) is essential to species conservation, because drivers of mortality can vary over multiple spatial and temporal scales. Although recent studies have evaluated the effects of climate, habitat quality, or resource management (e.g., hatchery operations) on salmonid recruitment and survival, a failure to look at multiple factors simultaneously leaves open questions about the relative importance of different factors. We analyzed the relationship between ten factors and survival (1980–2007) of four populations of salmonids with distinct life histories from two adjacent watersheds (Salmon and Scott rivers) in the Klamath River basin, California. The factors were ocean abundance, ocean harvest, hatchery releases, hatchery returns, Pacific Decadal Oscillation, North Pacific Gyre | run timing, salmonids, hatchery | |
2014 | A. L. Nichols, A. D. Willis, C. A. Jeffres, and M. L. Deas | Water Temperature Patterns Below Large Groundwater Springs: Management Implications For Coho Salmon In The Shasta River, California | Academic Article | Salmon, Water Temperature | Shasta River | 18010209 | Elevated stream temperature is a primary factor limiting the coho salmon (Oncorhynchus kisutch) population in California’s Shasta River Basin. Understanding the mechanisms driving spatial and temporal trends in water temperature throughout the Shasta River is critical to prioritising river restoration efforts aimed at protecting this threatened species. During the summer, the majority of streamflow in the Shasta River comes from large-volume, cold-water springs at the head of the tributary Big Springs Creek. In this study, we evaluated the initial character of this spring water, as well as the downstream fate and transport of these groundwater inflows during July and August 2008. Our results indicated that Big Springs Creek paradoxically provided both cool and warm waters to the Shasta River. During this period, cool groundwater inflows heated rapidly in the downstream direction in response to thermal loads from incoming solar radiation. During the night time, groundwater inflows did not appreciably heat in transit through Big Springs Creek. These diurnally varying water temperature conditions were inherited by the Shasta River, producing longitudinal temperature patterns that were out of phase with ambient meteorological conditions up to 23 km downstream. Findings from this study suggest that large, constant temperature spring sources and spring-fed rivers impart unique stream temperature patterns on downstream river reaches that can determine reach-scale habitat suitability for cold-water fishes such as coho salmon. Recognising and quantifying the spatiotemporal patterns of water temperature downstream from large spring inflows can help identify and prioritize river restoration actions in locations where temperature patterns will allow rearing of cold-water fishes. | coho, Shasta, water temperature | |
2014 | Rebecca M. Quiñones, Theodore E. Grantham, Brett N. Harvey, Joseph D. Kiernan, Mick Klasson, Alpa P. Wintzer, Peter B. Moyle | Dam Removal and Anadromous Salmonid (Oncorhynchus spp.) Conservation in California | Academic Article | Dam Removal, Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | Dam removal is often proposed for restoration of anadromous salmonid populations, which are in serious decline in California. However, the benefits of dam removal vary due to differences in affected populations and potential for environmental impacts. Here, we develop an assessment method to examine the relationship between dam removal and salmonid conservation, focusing on dams that act as complete migration barriers. Specifically, we (1) review the effects of dams on anadromous salmonids, (2) describe factors specific to dam removal in California, (3) propose a method to evaluate dam removal effects on salmonids, (4) apply this method to evaluate 24 dams, and (5) discuss potential effects of removing four dams on the Klamath River. Our flexible rating system can rapidly assess the likely effects of dam removal, as a first step in the prioritization of multiple dam removals. We rated eight dams proposed for removal and compared them with another 16 dams, which are not candidates for removal. Twelve of the 24 dams evaluated had scores that indicated at least a moderate benefit to salmonids following removal. In particular, scores indicated that removal of the four dams on the Klamath River is warranted for salmonid conservation. Ultimately, all dams will be abandoned, removed, or rebuilt even if the timespan is hundreds of years. Thus, periodic evaluation of the environmental benefits of dam removal is needed using criteria such as those presented in this paper. | dam removal | |
2013 | Thomas H. Williams, John Carlos Garza, Nicholas J. Hetrick, Steven T. Lindley, Michael S. Mohr, James M. Myers, Michael R. O’Farrell, Rebecca M. Quiñones, David J. Teel | Upper Klamath and Trinity River Chinook Salmon Biological Review Team Report | Technical Report | Salmon | Klamath Basin, Trinity River | 180102 | In response to a petition to list under the U.S. Endangered Species Act both spring-run and fall-run Chinook salmon in the Upper Klamath and Trinity Rivers (UKTR) Chinook Salmon Evolutionarily Significant Unit (ESU) the National Marine Fisheries Service (NMFS) Southwest Fisheries Science Center convened a Biological Review Team (BRT) to evaluate new information they determined to be most relevant to the questions of ESU | Chinook salmon | |
2011 | Jack Stanford, Walter Duffy, Eli Asarian, Brian Cluer, Phil Detrich, Lorri Eberle, Steve Edmondson, Scott Foott, Mark Hampton, Jacob Kann, Kevin Malone, Peter Moyle | Conceptual Model for Restoration of the Klamath River – Chapter 7 | Academic Article, Website | Habitat Restoration, Mainstem Klamath River, Salmon, Steelhead/Rainbow Trout | Klamath Basin | 180102 | The goal of this paper is to provide a conceptual model to underpin plans for restoration of salmon, resident fishes and other key attributes of the Klamath River Ecosystem. We include boundaries, principles, and assumptions for the Klamath River Ecosystem, with a scientific retrospective analysis serving as the basis for our conceptual model. The authors represent a broad range of professional expertise with many years of | restoration | |
2013 | Rebecca M. Quiñones, Michael L. Johnson, Peter B. Moyle | Hatchery Practices May Result in Replacement of Wild Salmonids: Adult Trends in the Klamath Basin, California | Academic Article | Hatcheries, Salmon, Steelhead/Rainbow Trout | Mid Klamath, Lower Klamath | 18010209 | Appraisal of hatchery-related effects on Pacific salmonids (Oncorhynchus spp.) is a necessary component of species conservation. For example, hatchery supplementation can influence species viability by | hatcheries, hatchery, salmon, steelhead | |
2016 | Brian W. Hodge, Margaret A. Wilzbach, Walter G. Duffy, Rebecca M. Quiñones & James A. Hobbs | Life History Diversity in Klamath River Steelhead | Academic Article | Steelhead/Rainbow Trout | Mid Klamath, Lower Klamath | 18010209 | Oncorhynchus mykiss exhibits a vast array of life histories, which increases its likelihood of persistence by spreading riskof extirpation among different pathways. The Klamath River basin (California–Oregon) provides a particularly interesting backdrop for the study of life history diversity in O. mykiss, in part because the river is slated for a historic and potentially influential dam removal and habitat recolonization project. We used scale and otolith strontium isotope (87Sr/86Sr) analyses to characterize life history diversity in wild O. mykiss from the lower Klamath River basin. We also determined maternal origin (anadromous or nonanadromous) and migratory history (anadromous or nonanadromous) of O. mykiss and compared length and fecundity at age between anadromous (steelhead) and nonanadromous (Rainbow Trout) phenotypes of O. mykiss. We identified a total of 38 life history categories at maturity, which differed in duration of freshwater and ocean rearing, age at maturation, and incidence of repeat spawning. Approximately 10% of adult fish sampled were nonanadromous. Rainbow Trout generally grew faster in freshwater than juvenile steelhead; however, ocean growth afforded adult steelhead greater length and fecundity than adult Rainbow Trout. Although 75% of | Steelhead | |
2017 | Various agencies and tribes | CDEC Shasta River Basin Data | Website | In-Stream Flow / Flow Regime, Water Quality, Water Temperature | Shasta River | 180102 | CDEC website links to all monitoring stations on within the Shasta River basin for water quality, water temperature, and instream flows. Click on hyperlink of station code in first column to access available data sets. Data has been provided by various state agencies, federal agencies, tribes, and the Shasta Valley Resource Conservation District. | water quality data, instream flow data, data | |
2017 | Various agencies and tribes | CDEC Scott River Basin Data | Website | In-Stream Flow / Flow Regime, Water Quality, Water Temperature | Scott River | 180102 | CDEC website includes all Scott River basin monitoring stations for water quality and instream flows. To access a monitoring station, click the hyperlink the first column. Data has been contributed by various state agencies, federal agencies, and tribes. | water quality data, instream flow data | |
2017 | California Department of Water Resources, U. S. Fish & Wildlife Service, Yurok Tribe, Karuk Tribe, U.S. Bureau of Reclamation, U.S. Geological Survey | CDEC Klamath River Basin Data | Website | In-Stream Flow / Flow Regime, Water Quality, Water Temperature | Klamath Basin | 180102 | CDEC website links to all mainstem Klamath related water quality and flow monitoring data from Clear Lake and the A Canal downstream to the mouth of the Klamath. Data is from multiple sources. To access data, click on the hyperlinked Station ID in the first column to see available datasets and time periods. Note USGS data is redundant with what is posted on the USGS website for identical stations (e.g., Klamath River at Iron Gate). | water quality data, flow data | |
2012 | Deborah L. Hathaway | Stream Depletion Impacts Associated with Pumping from Within or Beyond the “Interconnected Groundwater” Area as Defined in the 1980 Scott Valley Adjudication | Technical Memo | In-Stream Flow / Flow Regime, Water Allocation & Rights | Scott River | 18010209 | This memorandum describes an analysis of stream depletion impacts associated with pumping from two areas within the Scott Valley. One area is that within the zone of “Interconnected Groundwater” as delineated in the 1980 Scott Valley Adjudication. The second area is the area of alluvial fill within the Scott Valley that falls outside of the boundaries of the above-referenced zone. The analysis uses the Scott Valley Groundwater Model prepared by S.S. Papadopulos & Associates, Inc. (July 2012). | groundwater, Scott River | |
2012 | S.S. Papadoplos & Associates, Inc. | Groundwater Conditions in Scott Valley, California | Technical Report | In-Stream Flow / Flow Regime, Water Allocation & Rights | Scott River, Mid Klamath | 18010209 | This report describes groundwater conditions in the Scott Valley, located in Siskiyou County, California, and the development of a groundwater model representing the alluvial aquifer that can be used to investigate roundwater/surface-water interactions. The goal of this work is to improve understanding of the relationship between land and water use on flow conditions in the Scott River. The groundwater model is applied to examine groundwater conditions given recent levels of groundwater use, and under an alternative water use condition representing partial build-out of the existing groundwater capacity. The partial build-out case, in comparison to the recent condition case, provides a mechanism for examining the impacts of groundwater pumping on the aquifer and on the Scott River. Many other scenarios can be evaluated through specification of alternative conditions to the model input packages. For example, scenarios may be structured to examine how the location and timing of groundwater diversion and use, or how managed recharge, might enhance late season flows | groundwater, Scott River | |
2017 | California Department of Fish & Wildlife | Scott River and Shasta River Instream Flow Study Plan Development | Website | Aquatic Habitat / Invertebrates / Insects, Hydrology, Riparian Species & Wildlife, Sediment & Geomorphology, Water Temperature | Shasta River, Scott River | 18010209 | Scott River and Shasta River Instream Flow Study Plan Development. This site provides project materials for instream flow studies for the Shasta and Scott Rivers. | Study Plans, LIAM Process, Fish Passage, Mesohabitat Delineation | |
2016 | Russell W. Perry, John M. Plumb, Edward Jones, Nicholas A. Som, Nicholas J. Hetrick, Thomas B. Hardy | An Overview of the Stream Salmonid Simulator for the Trinity River | Presentation | Aquatic Habitat / Invertebrates / Insects, Hatcheries, Hydrology, Salmon, Sediment & Geomorphology | Trinity River, Lower Klamath | 18010209 | An Overview of the Stream Salmonid Simulator for the Trinity River. This presentation provides information on the Relevance to Decision Support System, Underlying Basis and Structure, Running S3 for DSS Workshop and Model output for 2012 for the Trinity River. | Decision Support System, fish habitat | |
2016 | Russell W. Perry, John M. Plumb, Nicholas A. Som, Nicholas Hetrick, Thomas Hardy | Modeling Fish Movement in a Spatially Explicit Population Model of Juvenile Chinook Salmon in the Klamath River, USA | Technical Memo | Salmon | Klamath Basin | 180102 | Movement of individuals through space is a common feature of life cycle models that simulate the effects of spatial variation in the environment on population dynamics. Movement models range in biological realism from simple meta-population models that keep track of the number of individuals in each sub-population to complex individual based approaches that keep track of the xy-coordinates of each individual in continuous space. We present an approach that is intermediate between these two extremes. We simulated movement of juvenile Chinook salmon by casting a continuous advection-diffusion model in terms of a discrete habitat template that represents the river as a mosaic of meso-habitat units. Movement is achieved by assigning the probability that fish in habitat unit h move to unit i in one time step. These movement probabilities are determined by integrating the advection-diffusion model between habitat unit boundaries. This approach has a number of advantages. First, movement is determined by two biologically meaningful parameters: the rate of migration and the rate of population spreading. Second, this movement model naturally accounts for variation in the model’s spatial (e.g., length of each habitat unit) or temporal (e.g., daily or weekly) resolution. Last, many different models of movement can be constructed from this general framework by allowing r and to vary with environmental or individual covariates. We illustrate application of this model to juvenile Chinook salmon in the Klamath River, USA, where movement rate varies as a function of fish density and size in each habitat unit. | modeling | |
2013 | Lorne A. Greig, David R. Marmorek, Carol Murray, Donald C. E. Robinson | Insight into Enabling Adaptive Management | Technical Report | Adaptive Management | The U.S. National Commission on Science for Sustainable Forestry recognized a need for effective adaptive management to support management for biological diversity. However, difficulties in implementing adaptive management in the U.S. Northwest Forest Plan led the Commission to wonder if comparisons across multiple adaptive management trials in the forest sector could provide insight into the factors that serve to enable or inhibit adaptive management. This comparison and the resulting discussions among a group of seasoned practitioners, with adaptive management experience at a variety of scales and levels of complexity, led to insights into a hierarchy of ten factors that can serve to either enable or inhibit implementation. Doing high quality adaptive management is about doing good science to enable learning from management experience. Enabling adaptive management though is about working with people to understand their concerns, to develop a common understanding and an environment of trust that allows adaptive | Adaptive Management cycle, Community Involvement, Planning | |||
2017 | Karuk Tribe | Karuk Tribe-Natural Resources Department | Website | Salmon, Water Quality | Mid Klamath, Scott River, Shasta River | 18010209 | The Mission of the Karuk Department of Natural Resources is to protect, enhance and restore the cultural/natural resources and ecological processes upon which Karuk people depend. Natural Resources staff ensure that the integrity of natural ecosystem processes and traditional values are incorporated into resource management strategies. | karuk, tribes | |
2015 | David Marmorek, Carol Murray, Marc Nelitz | Adaptive Management and the Missouri River Recovery Program: Attributes of Effective Governance for AM | Technical Report | Adaptive Management | This discussion paper presents a summary of first principles and key attributes related to effective governance in the context of Adaptive Management (AM). It draws upon lessons learned from other AM programs, primarily in North America. The intent is to organize this experience to provide insight and stimulate discussion for those working on the collaborative development of an effective system of governance for AM in the Missouri River Recover Program (MRRP). This document is not meant to be prescriptive about what type of governance should be established. Although several definitions of governance are available, a broadly held view is that it includes a consideration of authority, decision-making, and accountability. The concept of “adaptive governance” has recently emerged in the context of AM which adds a consideration of the need for organizational and institutional flexibility to cope with uncertainty and change. While AM has been applied for several decades, implementation has not been easy. Obstacles include concerns that implementing and rigorously evaluating management actions different from the status quo may be too costly, too risky, and/or contrary to values of some stakeholders, as well as perceptions that a shift to AM threatens existing management, research and monitoring programs. Effective governance can help to address some of these obstacles by openly addressing differences in value preferences and beliefs about causation, which tend to be at the root of disagreements that inhibit progress on AM. | Governance | |||
2017 | U.S. Fish and Wildife Service | Klamath Basin National Wildlife Refuge Complex | Website | Land Management & Irrigation, Upper Klamath, Water Quality | Upper Klamath | 18010206 | Website links to all of the refuges in the Upper Klamath Basin, including Tule Lake, Lower Klamath, Clear Lake, and Bear Valley. | refuges, wildlife refuges | |
2017 | Six Rivers National Forest, USDA | Six Rivers National Forest | Website | Lower Klamath, Riparian Species & Wildlife, Sediment & Geomorphology | Lower Klamath, Mid Klamath | 18010209 | This is the website for the Six Rivers National Forest, which is the primary national forest along the lower and mid Klamath River and tributaries, including the Trinity. The Six Rivers National Forest lies east of Redwood State and National Parks in northwestern California. It is a long, narrow piece of land that stretches about 140 miles from the Oregon border south to Mendocino County. It encompasses 957,590 National Forest acres and 133,410 acres of other ownership. Smith River National Recreation Area and Orleans, Lower Trinity, and Mad River Ranger Districts make up the Forest. The Forest lies in Del Norte County (43%), Humboldt County (35%), Trinity County (21%), and Siskiyou County (1%). | forest, upland, sediment, land management | |
2004 | Andrea J. Atkinson, Peter C. Trenham, Robert N. Fisher, Stacie A. Hathaway, Brenda S. Johnson, Steven G. Torres, Yvonne C. Moore | Designing Monitoring Programs in an Adaptive Management Context for Regional Multiple Species Conservation Plans | Technical Report | Adaptive Management, Monitoring Programs | Increasing numbers of regional, multiple species conservation plans have been developed in California since the early 1990s. However, building effective monitoring and adaptive management programs to support these plans has remained a challenge. In addition to collecting data on the status of resources and the results of management actions, monitoring programs for these plans need to resolve critical uncertainties and channel information into effective decision making. Because of the broad goals of many regional conservation plans, monitoring programs need to address ecosystem integrity and biodiversity while also tracking species “covered” by plan permits. In this document we provide a step-by-step procedure for developing effective monitoring programs in an adaptive management context. The guidance provided here has been gleaned from experience with large multiple species plans in southern California. The process begins with clearly defining program objectives, partitioning the program into manageable but meaningful pieces, and developing management-oriented conceptual models of system function. Then, based on the objectives and conceptual models, monitoring recommendations and critical uncertainties can be identified and a coordinated program designed. We include practical examples and insights from programs in southern California and discuss the evolution of monitoring and adaptive management programs through three successive stages: 1) inventorying resources and identifying relationships; 2) pilot testing of long-term monitoring and resolving critical management uncertainties; and 3) implementing long-term monitoring and adaptive management. Ultimately, the success of regional conservation planning depends on the ability of monitoring programs to confront the challenges of adaptively managing and monitoring complex ecosystems and diverse arrays of sensitive species. | conservation, ecosystem integrity, critical uncertainties, decision-making | |||
2009 | N. J. Hetrick, T. A. Shaw, P. Zedonis, J. C. Polos, and C. D. Chamberlain | Compilation of Information to Inform USFWS Principals on the Potential Effects of the Proposed Klamath Basin Restoration Agreement (Draft 11) on Fish and Fish Habitat Conditions in the Klamath Basin, with Emphasis on Fall Chinook Salmon | Technical Report | Habitat Restoration, Salmon | Klamath Basin | 180102 | This document is a compilation and summary of various modeling exercises, analyses, and relevant information relating to the potential effects of implementing the proposed Klamath Basin Restoration Agreement (KBRA- Draft 11) on fish and fish habitats during the interim years prior to and following the removal of PacifiCorp Hydropower Project dams (J C. Boyle, Copco 1 and 2, and Iron Gate) from the mainstem Klamath River, as proposed in the Draft Klamath Hydroelectric Settlement Agreement (KHSA). This report focuses primarily on the effects of the proposed Agreements on anadromous species, with emphasis on fall run Chinook salmon due to the relative abundance of existing data and modeling tools developed for this stock. This report does not assess interim measures specified in the Draft KHSA, and is not a comprehensive assessment of the potential effects of the KBRA’s water allocation plan, or the proposed removal of the PacifiCorp dam complex specified in the Draft KHSA. We anticipate that if the Agreements are implemented, more detailed evaluations will be conducted through a Secretarial Determination and NEPA process.In this report, we evaluate one possible hydrologic modeling scenario of KBRA implementation (WRIMS Run-32 Refuge), and compare the results to alternative flow schedules based on our current understanding of fish habitat needs, derived from flow habitat relationships described previously in the Hardy et al. (2006) “Phase II” instream flow report. More recent WRIMS model runs prepared by settlement parties are not included here, as they were completed after our analyses were finalized. We also evaluated results of a fall Chinook production model (SIAM), water quality models, and reviewed literature to describe the probable effects of the KBRA water allocation plan and restoration actions on water quantity, water quality, geomorphology, and fish health. | ||
2010 | John Hefner, PBS&J | Expert Review of Hetrick et. al 2009: Compilation of Information to Inform USFWS Principals on the Potential Effects of the Proposed Klamath Basin Restoration Agreement (Draft 11) on Fish and Fish Habitat Conditions in the Klamath Basin, with Emphasis on Fall Chinook Salmon | Technical Report | Habitat Restoration, Salmon | Klamath Basin | 180102 | This memorandum presents a summary of the major comments submitted to PBS&J by two independent expert reviewers of Hetrick, N.J., et. al. (2009). Compilation of information to inform USFWS principals on the potential effects of the proposed Klamath Basin Restoration Agreement (Draft 11) on fish and fish habitat conditions in the Klamath Basin, with emphasis on fall Chinook salmon. Arcata Fisheries Technical Report TR 2009-11. U.S. Fish | fish habitat, salmon, fall Chinook | |
2010 | J. L. Bartholomew, J. S. Foott | Compilation of Information Relating to Myxozoan Disease Effects to Inform the Klamath Basin Restoration Agreement | Technical Report | Salmon | Klamath Basin | 180102 | This technical report describes how myxozoan disease effects on juvenile Chinook and coho salmon are predicted to differ between the scenarios of current conditions and removal of the four Klamath project dams. We begin by summarizing what we know about the effects of myxozoan pathogens on Chinook salmon, the parasite life cycles, their distribution in the Klamath River and characteristics of the polychaete host that may be | fish disease, KBRA | |
2011 | Ron Cole | Effects of the Klamath Basin Restoration Agreement to Lower Klamath, Tule Lake and Upper Klamath National Wildlife Refuge | Technical Memo | Land Management & Irrigation, Riparian Species & Wildlife, Water Allocation & Rights | Upper Klamath | 18010206 | Provisions within the KBRA, particularly those related to water, potentially effect refuge biological resources. This document seeks to explore effects to these refugees under current Project operations, (termed No Action) compared to management under provisions of the KBRA. The analysis will focus on effects to water availability, wetland habitats, and migratory birds with an emphasis on wetland dependent species. | wetland, refuges | |
2017 | California Hatchery Review Project | California Hatchery Review Project-Klamath/Trinity | Website | Hatcheries | Mid Klamath, Klamath Basin | 18010209 | The Iron Gate Hatchery Review assessed the Coho, Fall Chinook, and Steelhead program. An appropriation for California hatchery review was provided to the US Fish and Wildlife Service and was administered through the Pacific States Marine Fisheries Commission. The review examined hatchery programs in the Klamath, Trinity and Central Valley basins. The goal of this hatchery program review initiative is to ensure that anadromous hatchery programs in California are managed and operated to meet one or both of the primary purposes for hatcheries: (1) Helping recover and conserve naturally spawning salmon and steelhead populations, and (2) | hatchery, hatcheries, Iron Gate | |
2009 | Alec G. Maule, Scott P. VanderKooi, John Hamilton, Richard Stocking, and Jerri Bartholomew | Physiological Development and Vulnerability to Ceratomyxa Shasta of Fall-run Chinook Salmon in the Upper Klamath River Watershed | Academic Article | Salmon | Upper Klamath | 18010206 | We evaluated a stock for restoring runs of fall Chinook salmon Oncorhynchus tshawytscha in the Upper Klamath River basin by monitoring its development in Iron Gate Hatchery and in net-pens in the Williamson River and Upper Klamath Lake in Oregon. We transferred age-1 hatchery fall Chinook salmon to net-pens in October 2005 and age-0 fall Chinook salmon in May 2006. Indices of smolt development were assessed in the hatchery and after 3 and 14 d in net-pens. Based on gill Na+, K+-ATPase activity and plasma thyroxine (T4) concentration, age-1 Chinook salmon were not developing smolt characteristics in the hatchery during October. Fish transferred to the river or lake had increased plasma cortisol in response to stress and increased T4 accompanying the change in water, but they did not have altered development. Variables in the age-0 Chinook salmon indicated that the fish in the hatchery were smolting. The fish in the river net-pens lost mass and had gill ATPase activity similar to that of the fish in the hatchery, whereas the fish transferred to the lake gained mass and length, had reduced condition factor, and had higher gill ATPase than the fish in the river. These results, along with environmental variables, suggest that the conditions in the lake were more conducive to smoltification than those in the river and thus accelerated the development of Chinook salmon. No Chinook salmon in the hatchery or either net-pen became infected with the myxosporean parasite Ceratomyxa shasta (the presence of which in the river and lake was confirmed) during either trial or when held for 90 d after a 10-d exposure in net-pens (2006 group). We concluded that that there is little evidence of physiological impairment or significant upriver vulnerability to C. shasta among this stock of fall Chinook salmon that would preclude them from being reintroduced into the Upper Klamath River basin. | C. shata, fish disease, Chinook, Upper Klamath | |
2017 | Siskiyou County | Siskiyou County Website | Website | Miscellaneous | 18010209 | Website for Siskiyou County, California. | Siskiyou County, local government | ||
2017 | State of California | California Fish and Game Code | Statute/Regulation | Dams & Reservoirs, Habitat Restoration, Other threatened fishes, Salmon, Steelhead/Rainbow Trout | Lower Klamath, |